Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99884 * 2 1 4 4 H 1.48495 * 109.47077 * 269.99944 * 3 2 1 5 5 H 1.48506 * 109.46904 * 29.99641 * 3 2 1 6 6 H 1.48496 * 109.46971 * 149.99479 * 3 2 1 7 7 C 1.38812 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00087 * 189.10210 * 7 2 1 9 9 N 1.36939 * 119.99965 * 9.09882 * 7 2 1 10 10 C 1.48150 * 127.83465 * 15.59532 * 9 7 2 11 11 C 1.54392 * 104.61386 * 140.39458 * 10 9 7 12 12 H 1.08993 * 118.17803 * 244.19801 * 11 10 9 13 13 C 1.53000 * 118.12445 * 87.18934 * 11 10 9 14 14 H 1.09003 * 117.44249 * 16.05878 * 13 11 10 15 15 C 1.52998 * 117.44512 * 160.80708 * 13 11 10 16 16 N 1.46502 * 109.47196 * 184.99921 * 15 13 11 17 17 C 1.34770 * 119.99596 * 180.02562 * 16 15 13 18 18 O 1.21483 * 120.00326 * 0.02562 * 17 16 15 19 19 C 1.48441 * 119.99622 * 179.72757 * 17 16 15 20 20 N 1.33484 * 119.22039 * 359.72612 * 19 17 16 21 21 N 1.28920 * 122.02659 * 179.74114 * 20 19 17 22 22 C 1.33815 * 119.73842 * 0.52576 * 21 20 19 23 23 C 1.40340 * 121.77619 * 179.71837 * 22 21 20 24 24 C 1.36191 * 119.62314 * 180.02562 * 23 22 21 25 25 C 1.39446 * 121.07063 * 0.02562 * 24 23 22 26 26 C 1.36131 * 121.01580 * 359.97438 * 25 24 23 27 27 C 1.40511 * 119.56340 * 359.97438 * 26 25 24 28 28 N 1.32058 * 119.21680 * 180.02562 * 19 17 16 29 29 C 1.53002 * 60.55662 * 268.46186 * 13 11 10 30 30 H 1.09001 * 119.53369 * 248.23697 * 29 13 11 31 31 C 1.48141 * 127.83932 * 195.57069 * 9 7 2 32 32 H 0.96999 * 120.00159 * 0.02562 * 1 2 3 33 33 H 1.08996 * 110.40956 * 21.60633 * 10 9 7 34 34 H 1.09002 * 110.40172 * 259.17605 * 10 9 7 35 35 H 1.09006 * 109.46885 * 65.00137 * 15 13 11 36 36 H 1.08998 * 109.46846 * 305.00212 * 15 13 11 37 37 H 0.96997 * 119.99499 * 359.97438 * 16 15 13 38 38 H 1.07991 * 120.18919 * 0.03710 * 23 22 21 39 39 H 1.07996 * 119.46257 * 180.02562 * 24 23 22 40 40 H 1.08002 * 119.49433 * 180.02562 * 25 24 23 41 41 H 1.07998 * 120.22373 * 180.02562 * 26 25 24 42 42 H 1.09001 * 110.41117 * 100.82012 * 31 9 7 43 43 H 1.09001 * 110.50233 * 338.43914 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0800 -1.2079 0.1485 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0340 -2.5711 -0.7106 11 6 0.0643 -3.8172 -1.6167 12 1 -0.1224 -3.6940 -2.6834 13 6 -0.1179 -5.1932 -0.9730 14 1 -0.5673 -5.2280 0.0195 15 6 -0.4666 -6.3628 -1.8957 16 7 -0.7169 -7.5615 -1.0914 17 6 -1.0432 -8.7216 -1.6947 18 8 -1.1293 -8.7735 -2.9054 19 6 -1.2909 -9.9376 -0.8803 20 7 -1.1807 -9.8658 0.4481 21 7 -1.3885 -10.8866 1.2075 22 6 -1.7154 -12.0641 0.6622 23 6 -1.9452 -13.2040 1.4478 24 6 -2.2749 -14.3807 0.8466 25 6 -2.3882 -14.4733 -0.5402 26 6 -2.1729 -13.3896 -1.3355 27 6 -1.8318 -12.1580 -0.7515 28 7 -1.6091 -11.0663 -1.4874 29 6 1.2865 -4.5975 -1.0895 30 1 2.0103 -5.0555 -1.7637 31 6 1.8196 -3.7545 0.0889 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3430 -1.7021 -1.2915 34 1 -0.7317 -2.7501 0.1076 35 1 0.3642 -6.5488 -2.5763 36 1 -1.3596 -6.1180 -2.4708 37 1 -0.6470 -7.5202 -0.1249 38 1 -1.8611 -13.1485 2.5230 39 1 -2.4516 -15.2562 1.4537 40 1 -2.6515 -15.4191 -0.9902 41 1 -2.2645 -13.4757 -2.4081 42 1 1.4114 -4.1184 1.0318 43 1 2.9091 -3.7800 0.1122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978499201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = 108.647719 kcal Electronic energy + Delta-G solvation = -27054.294268 eV Core-core repulsion = 23101.697472 eV Total energy + Delta-G solvation = -3952.596796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.24322 -41.04425 -40.24307 -39.05871 -36.74151 -36.28265 -35.12037 -33.36078 -32.64469 -32.03816 -29.32152 -28.85450 -27.65825 -26.97655 -26.04629 -23.70487 -23.08453 -22.50423 -21.64997 -20.85602 -20.54536 -20.10338 -18.85829 -18.69857 -17.46093 -17.31188 -17.20767 -16.76061 -16.24816 -16.13203 -15.91250 -15.47686 -15.32167 -15.16276 -14.65541 -14.52609 -14.24487 -14.06263 -13.69838 -13.64320 -13.38096 -13.19254 -13.18256 -13.11162 -12.88666 -12.73054 -12.52974 -12.32211 -11.98553 -11.94371 -11.78401 -11.66631 -10.96313 -10.78030 -10.72313 -10.66883 -10.57232 -10.22721 -9.83685 -8.90299 -7.91297 -5.27638 -1.48295 -1.13121 0.49806 1.00367 1.37569 1.46441 1.48613 1.57230 1.86950 2.20021 2.47864 2.58941 2.64750 2.70615 2.89916 3.20932 3.26291 3.57886 3.63951 3.70307 3.75824 3.84848 3.96913 4.16752 4.18279 4.26752 4.40361 4.42313 4.54947 4.60841 4.67299 4.70262 4.79791 4.93248 5.02314 5.02932 5.05813 5.17721 5.30733 5.36535 5.45358 5.49209 5.54087 5.63496 5.67314 6.17223 6.18598 6.77776 6.94394 7.01609 7.68712 8.47219 9.22461 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033741 B = 0.001735 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.643148 B =16130.228132 C =16596.800116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.620 5.620 10 C 0.188 3.812 11 C -0.170 4.170 12 H 0.118 0.882 13 C -0.114 4.114 14 H 0.108 0.892 15 C 0.163 3.837 16 N -0.687 5.687 17 C 0.589 3.411 18 O -0.539 6.539 19 C 0.197 3.803 20 N -0.251 5.251 21 N -0.159 5.159 22 C 0.011 3.989 23 C -0.080 4.080 24 C -0.061 4.061 25 C -0.040 4.040 26 C -0.108 4.108 27 C 0.113 3.887 28 N -0.423 5.423 29 C -0.160 4.160 30 H 0.127 0.873 31 C 0.148 3.852 32 H 0.250 0.750 33 H 0.054 0.946 34 H 0.002 0.998 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.421 0.579 38 H 0.171 0.829 39 H 0.194 0.806 40 H 0.192 0.808 41 H 0.160 0.840 42 H 0.026 0.974 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 -36.193 1.201 36.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.344 5.344 10 C 0.062 3.938 11 C -0.191 4.191 12 H 0.136 0.864 13 C -0.133 4.133 14 H 0.126 0.874 15 C 0.040 3.960 16 N -0.340 5.340 17 C 0.370 3.630 18 O -0.413 6.413 19 C -0.075 4.075 20 N -0.112 5.112 21 N -0.021 5.021 22 C -0.123 4.123 23 C -0.102 4.102 24 C -0.081 4.081 25 C -0.062 4.062 26 C -0.128 4.128 27 C -0.026 4.026 28 N -0.146 5.146 29 C -0.180 4.180 30 H 0.145 0.855 31 C 0.022 3.978 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.020 0.980 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.259 0.741 38 H 0.189 0.811 39 H 0.211 0.789 40 H 0.210 0.790 41 H 0.177 0.823 42 H 0.044 0.956 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.077 -34.959 0.641 35.489 hybrid contribution 0.128 0.981 0.079 0.992 sum -5.949 -33.978 0.719 34.503 Atomic orbital electron populations 1.70094 1.06510 1.25723 1.57196 1.25746 0.96515 1.01290 1.02135 0.85053 0.77752 0.78842 0.77524 1.21233 1.22036 1.19178 1.19394 0.91350 0.83677 1.42550 0.90171 1.45526 1.13892 1.01191 1.73829 1.20816 0.85990 0.93761 0.93198 1.23931 1.04212 0.90939 0.99991 0.86389 1.22390 0.98485 0.92129 1.00346 0.87366 1.20900 1.02052 0.80875 0.92184 1.45732 1.67792 1.08144 1.12284 1.17091 0.78081 0.81847 0.85990 1.90798 1.51993 1.84616 1.13910 1.24063 0.98619 0.94519 0.90292 1.73884 1.11164 1.22562 1.03568 1.74378 1.03572 0.96066 1.28036 1.21533 1.00073 0.96650 0.94074 1.21239 0.97761 0.89320 1.01868 1.21899 0.92474 0.98409 0.95349 1.21902 0.91212 0.99495 0.93595 1.21244 0.99742 0.88852 1.02927 1.20332 0.96643 0.94704 0.90930 1.69016 1.07373 0.98685 1.39510 1.23943 0.90560 1.02152 1.01325 0.85519 1.21291 0.97730 0.84354 0.94379 0.94127 0.92741 0.98024 0.90153 0.90026 0.74109 0.81136 0.78878 0.79046 0.82272 0.95597 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 10.86 21.65 0.24 -57.47 16 2 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 3 Si 0.98 46.13 29.56 68.60 2.03 48.15 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.24 -13.73 10.35 84.03 0.87 -12.86 16 8 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 9 N -0.62 -32.56 3.38 -688.17 -2.33 -34.89 16 10 C 0.19 9.34 5.70 86.53 0.49 9.84 16 11 C -0.17 -6.37 6.85 -9.88 -0.07 -6.44 16 12 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 13 C -0.11 -3.42 5.39 -10.79 -0.06 -3.47 16 14 H 0.11 3.26 8.04 -2.39 -0.02 3.24 16 15 C 0.16 4.27 5.95 86.38 0.51 4.78 16 16 N -0.69 -17.76 5.54 -465.40 -2.58 -20.34 16 17 C 0.59 17.65 7.85 86.96 0.68 18.34 16 18 O -0.54 -19.19 16.86 -3.66 -0.06 -19.25 16 19 C 0.20 5.60 7.65 137.46 1.05 6.65 16 20 N -0.25 -6.67 10.72 -52.35 -0.56 -7.23 16 21 N -0.16 -3.73 11.68 -51.79 -0.60 -4.33 16 22 C 0.01 0.19 6.68 40.33 0.27 0.46 16 23 C -0.08 -0.60 10.00 22.30 0.22 -0.38 16 24 C -0.06 0.00 9.95 22.08 0.22 0.21 16 25 C -0.04 -0.04 9.95 22.07 0.22 0.18 16 26 C -0.11 -1.08 10.01 22.33 0.22 -0.86 16 27 C 0.11 2.21 6.61 40.42 0.27 2.48 16 28 N -0.42 -11.47 10.22 -182.36 -1.86 -13.33 16 29 C -0.16 -5.45 6.74 -9.89 -0.07 -5.52 16 30 H 0.13 3.79 8.12 -2.39 -0.02 3.77 16 31 C 0.15 6.16 7.04 86.53 0.61 6.77 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.05 3.07 6.51 -2.39 -0.02 3.06 16 34 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.08 2.09 7.94 -2.38 -0.02 2.07 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.42 9.83 7.71 -92.71 -0.71 9.11 16 38 H 0.17 0.60 8.06 -2.92 -0.02 0.58 16 39 H 0.19 -1.65 8.06 -2.91 -0.02 -1.67 16 40 H 0.19 -1.43 8.06 -2.91 -0.02 -1.45 16 41 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -81.14 369.69 0.52 -80.62 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.35 Total: 11.07 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 5.91 Total: 17.00 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -7.70 Total: -137.59 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -81.14 0.52 -80.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978499201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.264 kcal (2) G-P(sol) polarization free energy of solvation -81.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds