Wall clock time and date at job start Sat Apr 11 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99907 * 2 1 4 4 C 1.50703 * 109.47617 * 179.97438 * 3 2 1 5 5 N 1.30936 * 122.90308 * 89.97428 * 4 3 2 6 6 C 1.29424 * 117.36654 * 180.02562 * 5 4 3 7 7 S 1.70959 * 110.38753 * 359.97438 * 6 5 4 8 8 C 1.35660 * 122.90339 * 270.00421 * 4 3 2 9 9 C 1.46686 * 126.13115 * 359.97438 * 8 4 3 10 10 O 1.21685 * 119.99958 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99817 * 180.02562 * 9 8 4 12 12 C 1.46496 * 119.99895 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.21654 * 34.99091 * 12 11 9 14 14 C 1.50127 * 110.25172 * 156.92841 * 12 11 9 15 15 C 1.54632 * 110.92967 * 216.54251 * 14 12 11 16 16 C 1.54899 * 110.19119 * 321.33701 * 15 14 12 17 17 N 1.43439 * 116.07875 * 318.52734 * 16 15 14 18 18 C 1.36933 * 120.53779 * 271.59111 * 17 16 15 19 19 H 1.08001 * 120.00235 * 336.67700 * 18 17 16 20 20 C 1.38813 * 119.99904 * 156.68491 * 18 17 16 21 21 N 1.31610 * 120.00039 * 340.40560 * 20 18 17 22 22 Si 1.86805 * 120.00000 * 160.40528 * 20 18 17 23 23 H 1.48500 * 109.47160 * 59.99654 * 22 20 18 24 24 H 1.48496 * 109.46979 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47088 * 300.00169 * 22 20 18 26 26 C 1.50168 * 118.92200 * 91.56613 * 17 16 15 27 27 C 1.46236 * 107.53618 * 289.58862 * 26 17 16 28 28 H 1.08998 * 109.47233 * 59.99791 * 1 2 3 29 29 H 1.09000 * 109.46429 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47342 * 299.99953 * 1 2 3 31 31 H 1.09005 * 109.47469 * 59.99870 * 3 2 1 32 32 H 1.09000 * 109.47285 * 299.99897 * 3 2 1 33 33 H 1.08006 * 124.81200 * 180.02562 * 6 5 4 34 34 H 0.96997 * 120.00395 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.20872 * 336.99937 * 14 12 11 36 36 H 1.09004 * 109.20859 * 96.30647 * 14 12 11 37 37 H 1.09004 * 109.42460 * 201.06163 * 15 14 12 38 38 H 1.08997 * 109.13543 * 81.43618 * 15 14 12 39 39 H 1.08994 * 108.16004 * 196.81644 * 16 15 14 40 40 H 1.08994 * 108.00095 * 80.12373 * 16 15 14 41 41 H 0.97005 * 120.00072 * 180.02562 * 21 20 18 42 42 H 1.09006 * 109.84439 * 170.08208 * 26 17 16 43 43 H 1.09001 * 109.90161 * 49.12822 * 26 17 16 44 44 H 1.09000 * 108.52365 * 297.17281 * 27 26 17 45 45 H 1.08997 * 108.40368 * 179.56705 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1866 0.0006 5 7 4.2220 1.1299 -1.0984 6 6 5.5061 1.0278 -0.9730 7 16 5.9423 0.9945 0.6797 8 6 4.2467 1.1287 1.1399 9 6 3.7230 1.1707 2.5095 10 8 2.5249 1.2655 2.7000 11 7 4.5688 1.1043 3.5567 12 6 4.0457 1.1458 4.9244 13 1 3.0852 0.6330 4.9761 14 6 5.0229 0.5154 5.8739 15 6 4.2864 -0.2659 6.9867 16 6 3.0170 0.5034 7.4295 17 7 3.1554 1.9249 7.5626 18 6 3.5654 2.4762 8.7471 19 1 3.4301 1.9334 9.6709 20 6 4.1548 3.7329 8.7605 21 7 4.6702 4.2299 7.6562 22 14 4.2166 4.7187 10.3461 23 1 4.9717 3.9572 11.3733 24 1 4.8932 6.0167 10.0959 25 1 2.8344 4.9655 10.8296 26 6 2.8440 2.7986 6.3816 27 6 3.8982 2.5909 5.3896 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.2035 0.9725 -1.7958 34 1 5.5238 1.0284 3.4048 35 1 5.6688 -0.1679 5.3225 36 1 5.6333 1.2948 6.3302 37 1 4.9502 -0.3905 7.8422 38 1 4.0004 -1.2461 6.6056 39 1 2.6945 0.1022 8.3902 40 1 2.2316 0.3054 6.7003 41 1 5.0824 5.1079 7.6656 42 1 2.8262 3.8442 6.6893 43 1 1.8784 2.5209 5.9590 44 1 4.8463 2.9149 5.8189 45 1 3.6816 3.2137 4.5217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052775933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:56 Heat of formation + Delta-G solvation = -18.692598 kcal Electronic energy + Delta-G solvation = -28086.946932 eV Core-core repulsion = 24231.979445 eV Total energy + Delta-G solvation = -3854.967487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.63546 -40.63652 -39.13061 -38.53633 -36.25994 -34.27614 -32.95375 -32.50883 -32.05018 -29.31616 -27.87233 -27.13692 -25.63993 -25.53803 -24.93413 -22.95450 -21.74700 -21.14914 -20.21495 -19.66523 -18.58358 -17.93043 -17.58221 -17.33962 -16.79736 -16.58288 -16.31300 -16.14461 -15.86704 -15.61969 -15.46918 -15.23394 -15.09950 -14.81824 -14.46001 -13.96167 -13.71311 -13.54662 -13.32190 -13.23659 -13.05116 -12.61542 -12.60340 -12.53031 -12.32837 -12.09089 -11.89607 -11.74307 -11.67392 -11.28850 -11.20639 -11.04132 -10.85525 -10.68924 -10.55985 -10.50367 -10.11120 -9.96754 -8.66111 -7.80820 -5.21546 -0.88255 0.09150 0.48380 1.26848 1.49444 1.52719 1.57980 1.95745 2.01737 2.56050 2.83318 3.31022 3.32783 3.57444 3.68186 3.86858 3.99674 4.05598 4.12733 4.25244 4.35108 4.45788 4.52484 4.53165 4.58812 4.61731 4.67333 4.81252 4.85433 4.88417 4.94446 5.00520 5.18908 5.22490 5.30536 5.37297 5.52178 5.62866 5.63858 5.70237 6.06082 6.10090 6.37168 6.43275 6.51553 7.06190 7.18432 7.91344 8.43791 9.23804 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.003058 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.439426 B = 9154.744323 C = 9704.996107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.128 3.872 4 C 0.127 3.873 5 N -0.491 5.491 6 C 0.046 3.954 7 S 0.237 5.763 8 C -0.302 4.302 9 C 0.589 3.411 10 O -0.552 6.552 11 N -0.703 5.703 12 C 0.163 3.837 13 H 0.074 0.926 14 C -0.105 4.105 15 C -0.132 4.132 16 C 0.147 3.853 17 N -0.600 5.600 18 C -0.261 4.261 19 H 0.064 0.936 20 C -0.039 4.039 21 N -0.916 5.916 22 Si 0.957 3.043 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.287 1.287 26 C 0.174 3.826 27 C -0.116 4.116 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.253 0.747 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.247 0.753 42 H 0.060 0.940 43 H 0.009 0.991 44 H 0.080 0.920 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 -8.406 -18.228 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C 0.049 3.951 4 C -0.013 4.013 5 N -0.205 5.205 6 C -0.249 4.249 7 S 0.493 5.507 8 C -0.427 4.427 9 C 0.375 3.625 10 O -0.432 6.432 11 N -0.354 5.354 12 C 0.059 3.941 13 H 0.092 0.908 14 C -0.143 4.143 15 C -0.173 4.173 16 C 0.019 3.981 17 N -0.322 5.322 18 C -0.391 4.391 19 H 0.082 0.918 20 C -0.236 4.236 21 N -0.562 5.562 22 Si 0.786 3.214 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.214 1.214 26 C 0.050 3.950 27 C -0.156 4.156 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.269 0.731 34 H 0.242 0.758 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.027 0.973 44 H 0.099 0.901 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.784 -8.412 -18.097 20.312 hybrid contribution -0.615 1.193 0.835 1.581 sum 3.169 -7.219 -17.263 18.977 Atomic orbital electron populations 1.22904 0.78938 1.03945 1.00764 1.87826 1.21825 1.26985 1.95629 1.20983 0.85818 0.85999 1.02263 1.20323 0.97397 0.97580 0.85968 1.66070 1.06386 1.17488 1.30594 1.29529 0.94725 0.98821 1.01778 1.83713 1.01379 1.62881 1.02730 1.25587 0.99708 1.19385 0.98058 1.16971 0.85994 0.76260 0.83241 1.90770 1.15984 1.51015 1.85472 1.45990 1.10064 1.73706 1.05605 1.20176 0.97895 0.96873 0.79142 0.90820 1.21520 0.97401 0.99533 0.95842 1.22686 0.98976 0.98233 0.97391 1.20574 0.95120 0.84193 0.98206 1.44311 1.77209 1.00558 1.10123 1.19388 1.32494 1.01204 0.86052 0.91793 1.25480 0.98295 1.00524 0.99257 1.70091 1.40435 1.17895 1.27794 0.85511 0.77246 0.78007 0.80609 1.20501 1.22175 1.21365 1.19914 0.92814 0.95960 0.86306 1.21104 1.03317 0.94446 0.96703 0.92256 0.88130 0.94202 0.90729 0.90611 0.73080 0.75827 0.90584 0.92923 0.92836 0.90596 0.94781 0.94809 0.94350 0.92165 0.97290 0.90148 0.96166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.91 16 2 O -0.40 -12.02 10.69 -148.98 -1.59 -13.62 16 3 C 0.13 3.67 5.75 71.24 0.41 4.08 16 4 C 0.13 3.53 6.42 42.10 0.27 3.80 16 5 N -0.49 -11.46 10.50 -190.40 -2.00 -13.45 16 6 C 0.05 0.67 12.22 130.60 1.60 2.27 16 7 S 0.24 3.80 22.35 -56.49 -1.26 2.53 16 8 C -0.30 -8.20 6.48 23.88 0.15 -8.04 16 9 C 0.59 19.62 7.71 86.45 0.67 20.28 16 10 O -0.55 -22.19 13.95 -4.30 -0.06 -22.25 16 11 N -0.70 -21.65 4.97 -451.70 -2.25 -23.90 16 12 C 0.16 5.99 2.19 43.91 0.10 6.08 16 13 H 0.07 2.98 5.77 -2.39 -0.01 2.96 16 14 C -0.10 -3.61 5.29 30.22 0.16 -3.45 16 15 C -0.13 -4.58 6.40 31.80 0.20 -4.37 16 16 C 0.15 6.07 5.18 87.59 0.45 6.52 16 17 N -0.60 -29.50 2.60 -707.84 -1.84 -31.34 16 18 C -0.26 -14.00 9.63 84.03 0.81 -13.20 16 19 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 20 C -0.04 -2.12 4.91 84.86 0.42 -1.70 16 21 N -0.92 -50.61 9.42 21.65 0.20 -50.41 16 22 Si 0.96 44.09 29.60 68.60 2.03 46.12 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 26 C 0.17 8.54 5.24 83.58 0.44 8.98 16 27 C -0.12 -5.12 4.74 28.36 0.13 -4.98 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 2.41 6.01 -2.38 -0.01 2.39 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.25 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.41 10.01 7.67 -92.71 -0.71 9.30 16 35 H 0.08 2.09 7.83 -2.39 -0.02 2.07 16 36 H 0.05 2.16 6.84 -2.38 -0.02 2.15 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.03 1.39 7.99 -2.39 -0.02 1.37 16 40 H 0.03 1.35 6.88 -2.39 -0.02 1.34 16 41 H 0.25 13.47 8.31 -92.70 -0.77 12.70 16 42 H 0.06 3.31 6.05 -2.38 -0.01 3.30 16 43 H 0.01 0.43 8.13 -2.39 -0.02 0.42 16 44 H 0.08 3.96 5.30 -2.39 -0.01 3.95 16 45 H 0.02 0.89 7.96 -2.39 -0.02 0.87 16 Total: -1.00 -69.19 368.10 0.60 -68.59 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.31 Total: 19.55 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 7.06 Total: 18.16 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -5.88 Total: -119.10 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.65 Total: -35.87 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.26 Total: 2.53 kcal Total: -69.19 0.60 -68.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052775933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.901 kcal (2) G-P(sol) polarization free energy of solvation -69.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds