Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99977 * 2 1 4 4 C 1.50698 * 109.47227 * 180.02562 * 3 2 1 5 5 N 1.28649 * 124.72236 * 90.27920 * 4 3 2 6 6 C 1.33563 * 115.76879 * 180.15522 * 5 4 3 7 7 C 1.47264 * 123.14163 * 179.82747 * 6 5 4 8 8 O 1.21625 * 119.99827 * 179.70487 * 7 6 5 9 9 N 1.34770 * 120.00015 * 359.71026 * 7 6 5 10 10 C 1.46503 * 119.99953 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.49012 * 325.04047 * 10 9 7 12 12 C 1.52567 * 109.49043 * 204.99535 * 10 9 7 13 13 C 1.47091 * 114.32574 * 155.01660 * 12 10 9 14 14 C 1.54864 * 110.32048 * 62.80715 * 13 12 10 15 15 N 1.44577 * 109.59997 * 288.73152 * 14 13 12 16 16 C 1.36935 * 118.64603 * 270.70802 * 15 14 13 17 17 H 1.08008 * 119.99845 * 27.24308 * 16 15 14 18 18 C 1.38806 * 120.00218 * 206.97284 * 16 15 14 19 19 N 1.31621 * 119.99954 * 17.02219 * 18 16 15 20 20 Si 1.86800 * 120.00044 * 197.02151 * 18 16 15 21 21 H 1.48498 * 109.47477 * 59.99875 * 20 18 16 22 22 H 1.48507 * 109.47272 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47079 * 299.99640 * 20 18 16 24 24 C 1.47601 * 122.71289 * 90.98386 * 15 14 13 25 25 C 1.50883 * 109.48914 * 85.11101 * 10 9 7 26 26 C 1.35212 * 113.71275 * 359.55983 * 6 5 4 27 27 S 1.70770 * 124.71772 * 269.97454 * 4 3 2 28 28 H 1.09001 * 109.46648 * 60.00562 * 1 2 3 29 29 H 1.08995 * 109.46540 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46815 * 300.00119 * 1 2 3 31 31 H 1.08998 * 109.47320 * 59.99543 * 3 2 1 32 32 H 1.09010 * 109.46732 * 299.99685 * 3 2 1 33 33 H 0.96997 * 120.00368 * 359.97438 * 9 7 6 34 34 H 1.09007 * 108.51359 * 33.76710 * 12 10 9 35 35 H 1.08994 * 108.39502 * 276.19010 * 12 10 9 36 36 H 1.08993 * 109.33320 * 302.54386 * 13 12 10 37 37 H 1.08999 * 109.19157 * 182.97275 * 13 12 10 38 38 H 1.09003 * 109.45179 * 168.69487 * 14 13 12 39 39 H 1.09003 * 109.45229 * 48.76809 * 14 13 12 40 40 H 0.97003 * 119.99916 * 180.02562 * 19 18 16 41 41 H 1.08998 * 108.95194 * 78.30099 * 24 15 14 42 42 H 1.09003 * 108.94596 * 196.92867 * 24 15 14 43 43 H 1.08992 * 109.36597 * 332.04252 * 25 10 9 44 44 H 1.09004 * 109.36465 * 91.66700 * 25 10 9 45 45 H 1.08000 * 125.58226 * 180.23080 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2431 1.1340 -1.0583 6 6 5.5580 1.0255 -0.8510 7 6 6.5418 0.9489 -1.9442 8 8 7.7275 0.8563 -1.6898 9 7 6.1282 0.9815 -3.2265 10 6 7.1069 0.9058 -4.3140 11 1 8.0187 1.4254 -4.0194 12 6 6.5294 1.5607 -5.5651 13 6 7.5405 2.0673 -6.5055 14 6 8.4035 0.9011 -7.0471 15 7 9.2714 0.4126 -5.9990 16 6 10.5070 0.9840 -5.8503 17 1 10.6697 2.0064 -6.1583 18 6 11.5487 0.2512 -5.2985 19 7 11.4653 -1.0604 -5.2277 20 14 13.0689 1.1265 -4.6565 21 1 12.6793 2.0665 -3.5749 22 1 14.0276 0.1261 -4.1221 23 1 13.7089 1.8827 -5.7628 24 6 8.8830 -0.6805 -5.0864 25 6 7.4232 -0.5401 -4.6069 26 6 5.9020 0.9985 0.4563 27 16 4.4828 1.1101 1.4026 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 5.1825 1.0550 -3.4294 34 1 5.8942 2.3920 -5.2588 35 1 5.9115 0.8273 -6.0831 36 1 8.1827 2.7838 -5.9935 37 1 7.0398 2.5621 -7.3377 38 1 9.0073 1.2541 -7.8831 39 1 7.7529 0.0944 -7.3848 40 1 12.1932 -1.5725 -4.8417 41 1 8.9990 -1.6324 -5.6047 42 1 9.5433 -0.6690 -4.2192 43 1 7.2813 -1.1315 -3.7024 44 1 6.7531 -0.9062 -5.3849 45 1 6.9085 0.9192 0.8398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052969219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -34.833233 kcal Electronic energy + Delta-G solvation = -27413.272760 eV Core-core repulsion = 23557.605363 eV Total energy + Delta-G solvation = -3855.667397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72463 -40.35782 -39.13262 -38.59586 -36.37512 -34.51668 -32.87502 -32.64801 -32.04851 -29.18829 -28.06691 -27.03551 -26.40567 -25.25443 -24.76912 -22.54020 -21.64536 -21.07482 -20.86366 -19.77800 -18.56250 -17.82773 -17.57914 -17.22058 -16.98455 -16.71001 -16.46946 -16.37026 -16.04461 -15.70610 -15.38390 -14.95751 -14.83920 -14.76223 -14.39252 -14.03533 -13.68175 -13.64724 -13.30340 -13.14972 -13.05515 -13.01761 -12.72465 -12.56405 -12.34310 -12.20128 -12.04143 -11.76938 -11.55400 -11.45227 -11.36327 -11.20548 -11.01109 -10.79597 -10.67275 -10.44168 -10.25920 -9.94059 -8.64980 -7.86189 -5.31397 -0.64020 0.14455 0.48434 0.76002 1.40275 1.46141 1.50769 2.11483 2.21703 2.50447 2.63278 3.19530 3.27870 3.66801 3.70976 3.77885 4.01833 4.05239 4.14836 4.19900 4.35853 4.42790 4.43811 4.45235 4.57099 4.63336 4.65681 4.70786 4.81692 4.92454 4.93962 4.99070 5.12003 5.19533 5.22129 5.32640 5.47335 5.54718 5.60444 5.68256 5.74260 6.10504 6.21494 6.41280 6.57964 7.14892 7.18128 7.95848 8.34982 9.18963 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.002778 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.739160 B =10076.538278 C =11109.511883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.140 3.860 4 C -0.001 4.001 5 N -0.444 5.444 6 C -0.011 4.011 7 C 0.581 3.419 8 O -0.574 6.574 9 N -0.695 5.695 10 C 0.162 3.838 11 H 0.055 0.945 12 C -0.102 4.102 13 C -0.131 4.131 14 C 0.148 3.852 15 N -0.604 5.604 16 C -0.262 4.262 17 H 0.065 0.935 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.957 3.043 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.197 3.803 25 C -0.131 4.131 26 C -0.240 4.240 27 S 0.330 5.670 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.415 0.585 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.247 0.753 41 H 0.000 1.000 42 H 0.027 0.973 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.179 6.629 13.217 30.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.061 3.939 4 C -0.280 4.280 5 N -0.162 5.162 6 C -0.147 4.147 7 C 0.365 3.635 8 O -0.454 6.454 9 N -0.345 5.345 10 C 0.058 3.942 11 H 0.073 0.927 12 C -0.140 4.140 13 C -0.171 4.171 14 C 0.021 3.979 15 N -0.326 5.326 16 C -0.392 4.392 17 H 0.083 0.917 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.786 3.214 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.193 1.193 24 C 0.071 3.929 25 C -0.171 4.171 26 C -0.383 4.383 27 S 0.588 5.412 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -26.637 6.313 13.934 30.717 hybrid contribution 1.746 0.051 -0.536 1.827 sum -24.892 6.364 13.398 28.976 Atomic orbital electron populations 1.22996 0.78126 1.04134 1.01692 1.87921 1.22345 1.27108 1.95816 1.20995 0.82248 0.86066 1.04638 1.27212 1.02259 1.05892 0.92662 1.66831 1.02452 1.13993 1.32906 1.20178 0.90223 1.10891 0.93423 1.17557 0.86652 0.76212 0.83073 1.90869 1.18262 1.51865 1.84401 1.45938 1.11538 1.72507 1.04529 1.20279 0.91133 0.96019 0.86775 0.92703 1.20521 0.98686 1.00905 0.93907 1.21289 0.97639 0.99022 0.99199 1.20959 0.92282 0.94823 0.89800 1.43840 1.14172 1.40788 1.33791 1.19432 0.87551 0.94777 1.37457 0.91697 1.25743 1.00409 0.95647 1.02785 1.70208 1.33360 1.05405 1.49111 0.85485 0.79702 0.77577 0.78635 1.21468 1.22008 1.19322 1.20630 0.91070 0.88893 0.92267 1.22292 0.98395 0.96328 1.00101 1.26995 1.08334 1.05609 0.97333 1.82355 0.90879 1.60207 1.07802 0.92789 0.88775 0.91693 0.87322 0.89217 0.74751 0.90567 0.90245 0.94276 0.88982 0.94056 0.93386 0.94411 0.98244 0.95413 0.93695 0.90701 0.79268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.33 10.69 -148.98 -1.59 -7.92 16 3 C 0.14 1.66 6.51 71.24 0.46 2.13 16 4 C 0.00 -0.02 6.97 88.57 0.62 0.59 16 5 N -0.44 -11.26 10.12 -180.83 -1.83 -13.09 16 6 C -0.01 -0.34 6.70 40.56 0.27 -0.07 16 7 C 0.58 21.96 7.62 86.62 0.66 22.62 16 8 O -0.57 -27.27 16.37 -4.11 -0.07 -27.33 16 9 N -0.69 -23.49 4.93 -449.94 -2.22 -25.70 16 10 C 0.16 6.25 2.06 44.16 0.09 6.35 16 11 H 0.05 2.70 6.92 -2.39 -0.02 2.69 16 12 C -0.10 -3.12 4.69 28.61 0.13 -2.98 16 13 C -0.13 -4.39 5.74 29.39 0.17 -4.22 16 14 C 0.15 6.11 5.65 87.37 0.49 6.60 16 15 N -0.60 -31.57 2.26 -697.67 -1.58 -33.15 16 16 C -0.26 -15.20 9.43 84.03 0.79 -14.41 16 17 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 18 C -0.05 -3.04 4.83 84.86 0.41 -2.63 16 19 N -0.93 -59.27 11.12 21.65 0.24 -59.02 16 20 Si 0.96 48.70 29.59 68.60 2.03 50.73 16 21 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 22 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 24 C 0.20 10.48 4.71 86.61 0.41 10.89 16 25 C -0.13 -5.51 5.39 30.35 0.16 -5.35 16 26 C -0.24 -5.85 10.62 67.12 0.71 -5.13 16 27 S 0.33 4.90 22.92 -56.49 -1.29 3.60 16 28 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.42 11.55 8.12 -92.71 -0.75 10.79 16 34 H 0.08 1.96 8.04 -2.38 -0.02 1.94 16 35 H 0.08 2.10 7.35 -2.39 -0.02 2.08 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.04 1.73 7.99 -2.39 -0.02 1.71 16 39 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 40 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.00 -0.03 8.03 -2.39 -0.02 -0.05 16 42 H 0.03 1.71 6.39 -2.39 -0.02 1.70 16 43 H 0.04 1.96 7.85 -2.39 -0.02 1.94 16 44 H 0.07 2.72 7.31 -2.38 -0.02 2.70 16 45 H 0.19 4.58 8.03 -2.91 -0.02 4.56 16 Total: -1.00 -80.58 378.53 0.58 -80.00 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.25 Total: 16.06 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 6.64 Total: 15.83 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -5.38 Total: -130.97 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.66 Total: -35.25 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.29 Total: 3.60 kcal Total: -80.58 0.58 -80.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052969219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.163 kcal (2) G-P(sol) polarization free energy of solvation -80.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds