Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99730 * 2 1 4 4 H 1.48498 * 109.47185 * 274.98055 * 3 2 1 5 5 H 1.48499 * 109.47668 * 34.98049 * 3 2 1 6 6 H 1.48502 * 109.47142 * 154.98461 * 3 2 1 7 7 C 1.38807 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99934 * 187.05644 * 7 2 1 9 9 N 1.36941 * 120.00067 * 7.06393 * 7 2 1 10 10 C 1.47016 * 125.64935 * 354.81554 * 9 7 2 11 11 C 1.54322 * 107.27267 * 178.97955 * 10 9 7 12 12 H 1.09002 * 110.72321 * 96.16888 * 11 10 9 13 13 N 1.46502 * 110.72071 * 219.26757 * 11 10 9 14 14 C 1.34775 * 119.99690 * 271.15637 * 13 11 10 15 15 O 1.21281 * 120.00289 * 0.02562 * 14 13 11 16 16 C 1.50705 * 119.99766 * 179.97438 * 14 13 11 17 17 F 1.39894 * 110.75026 * 57.01936 * 16 14 13 18 18 C 1.55303 * 110.84650 * 180.71589 * 16 14 13 19 19 C 1.54949 * 100.94404 * 152.32434 * 18 16 14 20 20 O 1.43647 * 105.13044 * 323.55324 * 19 18 16 21 21 C 1.43232 * 109.97377 * 24.43221 * 20 19 18 22 22 C 1.55157 * 102.94360 * 337.80777 * 11 10 9 23 23 H 1.08990 * 111.00426 * 153.57567 * 22 11 10 24 24 N 1.46499 * 111.00255 * 277.42971 * 22 11 10 25 25 C 1.35317 * 125.86932 * 84.71200 * 24 22 11 26 26 C 1.35352 * 106.17484 * 179.90308 * 25 24 22 27 27 N 1.33772 * 106.49516 * 0.35263 * 26 25 24 28 28 N 1.28629 * 108.88557 * 359.77635 * 27 26 25 29 29 C 1.47430 * 125.64588 * 174.85968 * 9 7 2 30 30 H 0.96997 * 120.00106 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88019 * 59.55808 * 10 9 7 32 32 H 1.09003 * 109.88612 * 298.39573 * 10 9 7 33 33 H 0.96998 * 120.00282 * 91.15473 * 13 11 10 34 34 H 1.09002 * 111.12685 * 270.23901 * 18 16 14 35 35 H 1.08995 * 111.13011 * 34.40293 * 18 16 14 36 36 H 1.09002 * 110.31014 * 204.63838 * 19 18 16 37 37 H 1.08997 * 110.30971 * 82.46407 * 19 18 16 38 38 H 1.09001 * 109.82808 * 238.77467 * 21 20 19 39 39 H 1.09000 * 109.83385 * 117.80069 * 21 20 19 40 40 H 1.08001 * 126.91305 * 0.02562 * 25 24 22 41 41 H 1.08002 * 126.75284 * 180.12162 * 26 25 24 42 42 H 1.08996 * 110.37048 * 322.93102 * 29 9 7 43 43 H 1.08999 * 110.36479 * 85.25266 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5042 2.6200 0.8026 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0841 -1.2056 0.1154 9 7 1.3333 -2.3836 -0.1448 10 6 -0.1282 -2.5324 -0.2020 11 6 -0.4287 -4.0334 -0.3972 12 1 -0.6378 -4.5125 0.5593 13 7 -1.5470 -4.2218 -1.3246 14 6 -2.8112 -4.2518 -0.8584 15 8 -3.0231 -4.1223 0.3287 16 6 -3.9617 -4.4450 -1.8125 17 9 -3.8086 -5.6300 -2.5400 18 6 -5.3171 -4.4278 -1.0545 19 6 -6.2687 -3.9156 -2.1650 20 8 -5.4978 -2.9567 -2.9065 21 6 -4.1002 -3.2332 -2.7589 22 6 0.8915 -4.5759 -1.0057 23 1 1.0203 -5.6341 -0.7789 24 7 0.9388 -4.3411 -2.4510 25 6 1.3505 -3.2031 -3.0564 26 6 1.2332 -3.4202 -4.3872 27 7 0.7543 -4.6612 -4.5288 28 7 0.5907 -5.1799 -3.3631 29 6 1.9495 -3.7172 -0.2688 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5262 -1.9623 -1.0415 32 1 -0.5731 -2.1834 0.7299 33 1 -1.3777 -4.3250 -2.2741 34 1 -5.5975 -5.4292 -0.7281 35 1 -5.2877 -3.7361 -0.2126 36 1 -7.1432 -3.4378 -1.7233 37 1 -6.5725 -4.7384 -2.8121 38 1 -3.5956 -2.3683 -2.3283 39 1 -3.6657 -3.4708 -3.7299 40 1 1.7037 -2.3033 -2.5746 41 1 1.4747 -2.7265 -5.1789 42 1 2.8661 -3.6585 -0.8557 43 1 2.1555 -4.1331 0.7174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070006197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = 1.795726 kcal Electronic energy + Delta-G solvation = -31524.428299 eV Core-core repulsion = 27136.428828 eV Total energy + Delta-G solvation = -4387.999471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.26659 -44.28397 -41.40867 -40.05930 -39.21550 -35.93485 -34.98175 -33.49900 -33.05718 -31.87389 -31.08299 -30.19311 -29.14699 -26.74833 -25.08718 -24.10957 -23.66457 -23.47811 -22.23508 -21.57910 -21.40448 -19.66767 -19.11146 -18.63818 -18.22357 -17.55705 -17.31787 -16.80560 -16.59872 -16.35460 -16.06340 -16.01243 -15.80743 -15.66934 -15.58484 -15.00809 -14.90759 -14.77429 -14.26428 -14.06008 -13.90861 -13.52903 -13.42964 -13.12386 -12.93250 -12.86350 -12.74486 -12.70738 -12.56362 -12.29273 -12.14145 -12.06200 -11.89915 -11.83211 -11.27472 -11.13527 -10.79708 -10.74934 -10.38541 -10.27591 -9.00642 -7.88711 -5.26135 0.63413 1.02323 1.27209 1.49779 1.51767 1.59079 1.60483 1.65396 2.45842 2.47658 2.61476 2.96730 3.08518 3.24938 3.32608 3.36566 3.47912 3.55228 3.73887 3.78561 3.87939 4.03651 4.15930 4.18682 4.33101 4.41962 4.44272 4.46098 4.61768 4.68111 4.68282 4.78922 4.79838 4.86784 4.93387 5.28866 5.36579 5.47067 5.62875 5.66467 5.70855 5.99931 6.08483 6.67106 7.01532 7.52983 7.68126 8.27662 9.20567 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.004673 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.593812 B = 5990.683419 C = 7134.509266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.306 1.306 6 H -0.267 1.267 7 C -0.237 4.237 8 H 0.094 0.906 9 N -0.614 5.614 10 C 0.187 3.813 11 C 0.117 3.883 12 H 0.120 0.880 13 N -0.699 5.699 14 C 0.512 3.488 15 O -0.538 6.538 16 C 0.070 3.930 17 F -0.179 7.179 18 C -0.154 4.154 19 C 0.047 3.953 20 O -0.386 6.386 21 C 0.044 3.956 22 C 0.126 3.874 23 H 0.158 0.842 24 N -0.276 5.276 25 C -0.017 4.017 26 C -0.065 4.065 27 N -0.291 5.291 28 N -0.114 5.114 29 C 0.128 3.872 30 H 0.245 0.755 31 H 0.027 0.973 32 H 0.011 0.989 33 H 0.403 0.597 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.189 0.811 41 H 0.213 0.787 42 H 0.073 0.927 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 -9.918 -4.283 11.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.233 1.233 6 H -0.191 1.191 7 C -0.365 4.365 8 H 0.112 0.888 9 N -0.341 5.341 10 C 0.060 3.940 11 C 0.010 3.990 12 H 0.138 0.862 13 N -0.350 5.350 14 C 0.296 3.704 15 O -0.415 6.415 16 C 0.049 3.951 17 F -0.159 7.159 18 C -0.192 4.192 19 C -0.028 4.028 20 O -0.306 6.306 21 C -0.034 4.034 22 C 0.023 3.977 23 H 0.175 0.825 24 N -0.069 5.069 25 C -0.168 4.168 26 C -0.221 4.221 27 N -0.157 5.157 28 N -0.092 5.092 29 C 0.002 3.998 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.029 0.971 33 H 0.240 0.760 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.139 0.861 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.206 0.794 41 H 0.230 0.770 42 H 0.091 0.909 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.594 -10.919 -3.825 12.851 hybrid contribution 0.961 2.119 0.212 2.337 sum -4.634 -8.799 -3.614 10.581 Atomic orbital electron populations 1.70154 1.06322 1.25292 1.57365 1.25516 0.96179 1.00682 1.02112 0.85202 0.77953 0.79811 0.77189 1.21344 1.23333 1.19106 1.19357 0.91735 0.82611 1.42842 0.88794 1.44590 1.01079 1.01951 1.86482 1.21176 0.84844 0.89123 0.98819 1.22728 0.84081 0.98427 0.93796 0.86193 1.45819 1.05494 1.72016 1.11634 1.20591 0.84154 0.76632 0.89053 1.90738 1.84445 1.49475 1.16809 1.22651 0.96716 0.83993 0.91785 1.92949 1.96708 1.47855 1.78436 1.23779 0.89444 1.06524 0.99446 1.23762 0.94829 0.92670 0.91528 1.88437 1.15329 1.54133 1.72672 1.23627 0.84957 0.95343 0.99430 1.23396 0.97008 1.03984 0.73352 0.82467 1.47349 1.41016 1.10132 1.08450 1.24092 1.04711 0.93953 0.94061 1.24021 1.06166 0.95666 0.96279 1.75029 1.16440 1.09241 1.15040 1.78225 1.20797 1.18230 0.91996 1.22154 0.94095 0.84667 0.98900 0.94528 0.95465 0.97068 0.76022 0.86052 0.87921 0.86105 0.89590 0.90235 0.88470 0.79357 0.77030 0.90884 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.01 10.36 21.65 0.22 -51.79 16 2 C -0.05 -2.55 5.48 84.86 0.46 -2.09 16 3 Si 0.97 41.68 29.56 68.60 2.03 43.71 16 4 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.31 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.24 -11.15 10.05 84.03 0.84 -10.30 16 8 H 0.09 4.16 7.84 -2.91 -0.02 4.14 16 9 N -0.61 -25.46 2.23 -691.99 -1.54 -27.00 16 10 C 0.19 8.08 4.75 86.73 0.41 8.49 16 11 C 0.12 3.87 3.14 46.18 0.14 4.01 16 12 H 0.12 3.90 7.62 -2.39 -0.02 3.88 16 13 N -0.70 -22.59 5.08 -436.91 -2.22 -24.81 16 14 C 0.51 16.88 6.77 87.66 0.59 17.47 16 15 O -0.54 -20.55 15.39 -3.03 -0.05 -20.60 16 16 C 0.07 1.92 1.45 -10.28 -0.01 1.91 16 17 F -0.18 -4.89 16.97 44.97 0.76 -4.12 16 18 C -0.15 -3.42 6.09 32.05 0.20 -3.22 16 19 C 0.05 0.91 7.78 72.65 0.57 1.48 16 20 O -0.39 -10.27 11.36 -148.98 -1.69 -11.97 16 21 C 0.04 1.21 7.21 72.45 0.52 1.73 16 22 C 0.13 3.49 4.06 46.38 0.19 3.68 16 23 H 0.16 3.33 8.14 -2.39 -0.02 3.31 16 24 N -0.28 -8.34 2.45 -320.59 -0.79 -9.12 16 25 C -0.02 -0.52 10.01 83.49 0.84 0.31 16 26 C -0.06 -1.88 12.05 83.73 1.01 -0.87 16 27 N -0.29 -9.45 12.41 -58.25 -0.72 -10.17 16 28 N -0.11 -3.63 12.24 37.02 0.45 -3.18 16 29 C 0.13 3.88 6.22 86.85 0.54 4.42 16 30 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 31 H 0.03 1.35 7.19 -2.39 -0.02 1.34 16 32 H 0.01 0.58 7.61 -2.39 -0.02 0.57 16 33 H 0.40 12.91 6.77 -92.71 -0.63 12.28 16 34 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.10 2.54 7.38 -2.39 -0.02 2.52 16 36 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 2.45 7.81 -2.39 -0.02 2.43 16 39 H 0.10 2.50 8.11 -2.39 -0.02 2.48 16 40 H 0.19 6.70 6.81 -2.91 -0.02 6.68 16 41 H 0.21 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.07 2.11 7.87 -2.39 -0.02 2.09 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -63.34 356.50 3.19 -60.15 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.43 Total: 31.86 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 6.30 Total: 27.03 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -4.59 Total: -126.07 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.74 Total: -32.57 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.76 Total: -4.12 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -63.34 3.19 -60.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070006197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.947 kcal (2) G-P(sol) polarization free energy of solvation -63.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds