Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99473 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.88527 * 34.29287 * 10 9 7 12 12 C 1.54912 * 111.00682 * 270.41968 * 10 9 7 13 13 N 1.47464 * 104.81498 * 204.94733 * 12 10 9 14 14 C 1.34774 * 125.62954 * 204.13642 * 13 12 10 15 15 O 1.21284 * 120.00032 * 179.97438 * 14 13 12 16 16 C 1.50702 * 120.00067 * 359.92079 * 14 13 12 17 17 F 1.39890 * 110.45575 * 312.60490 * 16 14 13 18 18 C 1.54507 * 110.50796 * 189.99949 * 16 14 13 19 19 C 1.54486 * 104.06241 * 241.35464 * 18 16 14 20 20 O 1.44419 * 104.80348 * 23.98072 * 19 18 16 21 21 C 1.44434 * 105.27650 * 319.49121 * 20 19 18 22 22 C 1.47025 * 108.72179 * 24.06946 * 13 12 10 23 23 C 1.54324 * 107.26770 * 358.97369 * 22 13 12 24 24 H 1.09007 * 110.71721 * 219.44040 * 23 22 13 25 25 N 1.46504 * 110.87042 * 96.24614 * 23 22 13 26 26 C 1.35312 * 125.86526 * 331.38397 * 25 23 22 27 27 C 1.35355 * 106.17411 * 180.02562 * 26 25 23 28 28 N 1.33772 * 106.49685 * 0.02562 * 27 26 25 29 29 N 1.28642 * 108.88176 * 359.73357 * 28 27 26 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 32 32 H 1.09002 * 110.36640 * 323.75210 * 12 10 9 33 33 H 1.09005 * 110.36760 * 86.06962 * 12 10 9 34 34 H 1.09001 * 110.51634 * 359.97438 * 18 16 14 35 35 H 1.09001 * 110.51193 * 122.71327 * 18 16 14 36 36 H 1.08996 * 110.37244 * 142.81688 * 19 18 16 37 37 H 1.09001 * 110.36828 * 265.15481 * 19 18 16 38 38 H 1.09000 * 110.37064 * 281.67940 * 21 20 19 39 39 H 1.08994 * 110.37497 * 159.34517 * 21 20 19 40 40 H 1.09002 * 109.88263 * 239.55872 * 22 13 12 41 41 H 1.08999 * 110.01372 * 118.46552 * 22 13 12 42 42 H 1.07999 * 126.91510 * 359.97438 * 26 25 23 43 43 H 1.07995 * 126.75478 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9809 -3.5727 0.5743 12 6 2.3447 -4.1324 -1.4456 13 7 2.4941 -5.5956 -1.3386 14 6 3.1777 -6.3797 -2.1954 15 8 3.2348 -7.5767 -2.0084 16 6 3.8703 -5.7694 -3.3866 17 9 3.0116 -4.8890 -4.0533 18 6 4.3676 -6.8724 -4.3475 19 6 5.9004 -6.6821 -4.3764 20 8 6.2130 -6.0158 -3.1338 21 6 5.1614 -5.0431 -2.9485 22 6 1.7753 -6.0571 -0.1420 23 6 1.1715 -4.8107 0.5389 24 1 1.2530 -4.8861 1.6233 25 7 -0.2250 -4.6220 0.1380 26 6 -0.7712 -5.0081 -1.0383 27 6 -2.0728 -4.6403 -0.9883 28 7 -2.2567 -4.0545 0.2002 29 7 -1.1439 -4.0642 0.8457 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.5089 -3.8836 -2.0996 33 1 3.2653 -3.6826 -1.8174 34 1 4.1129 -7.8592 -3.9608 35 1 3.9463 -6.7304 -5.3427 36 1 6.4019 -7.6485 -4.4254 37 1 6.1896 -6.0601 -5.2236 38 1 5.3373 -4.1699 -3.5767 39 1 5.0954 -4.7506 -1.9007 40 1 2.4679 -6.5523 0.5386 41 1 0.9799 -6.7458 -0.4270 42 1 -0.2693 -5.5082 -1.8534 43 1 -2.8167 -4.7903 -1.7566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070259338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = 18.281056 kcal Electronic energy + Delta-G solvation = -31320.337166 eV Core-core repulsion = 26933.052552 eV Total energy + Delta-G solvation = -4387.284613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.19511 -42.92371 -40.47840 -39.12884 -37.81034 -34.44333 -33.67332 -32.03578 -31.37801 -30.67647 -30.15973 -28.97172 -27.86292 -25.16990 -23.89920 -23.61437 -22.42860 -22.25894 -21.44508 -20.22218 -19.70833 -17.99597 -17.85108 -17.32824 -17.06542 -16.78704 -16.00826 -15.69289 -15.52788 -15.29408 -14.77274 -14.71862 -14.68365 -14.25727 -14.10082 -13.86469 -13.53654 -13.46741 -13.27323 -13.14543 -12.80094 -12.41798 -12.36433 -11.94869 -11.87691 -11.66788 -11.32102 -11.21728 -11.11802 -11.03638 -10.93633 -10.52004 -10.41892 -10.29032 -10.00656 -9.93325 -9.66491 -9.19478 -8.94425 -8.86375 -7.30189 -5.94502 -3.31448 2.00676 2.13077 2.44113 2.66956 3.05100 3.32828 3.37324 3.39996 3.46200 3.67216 3.91058 3.92840 4.19020 4.40320 4.45572 4.54594 4.69074 4.78061 4.84687 4.87310 5.08988 5.11370 5.20434 5.27112 5.31682 5.33222 5.39302 5.41926 5.43714 5.60896 5.62469 5.65711 5.78575 5.88883 5.96007 6.12438 6.27016 6.29752 6.52829 6.96036 7.16412 7.48322 7.71421 8.17634 8.97382 9.30826 9.77321 10.11759 11.24915 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.004703 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.056502 B = 5952.817349 C = 7888.145132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.003 3.997 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.270 4.270 8 H 0.075 0.925 9 N -0.703 5.703 10 C 0.167 3.833 11 H 0.093 0.907 12 C 0.062 3.938 13 N -0.606 5.606 14 C 0.526 3.474 15 O -0.523 6.523 16 C 0.076 3.924 17 F -0.178 7.178 18 C -0.171 4.171 19 C 0.047 3.953 20 O -0.359 6.359 21 C 0.034 3.966 22 C 0.106 3.894 23 C 0.114 3.886 24 H 0.135 0.865 25 N -0.271 5.271 26 C -0.051 4.051 27 C -0.054 4.054 28 N -0.270 5.270 29 N -0.062 5.062 30 H 0.261 0.739 31 H 0.394 0.606 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.177 0.823 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.127 -14.595 -7.768 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.196 4.196 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.400 4.400 8 H 0.093 0.907 9 N -0.344 5.344 10 C 0.051 3.949 11 H 0.110 0.890 12 C -0.064 4.064 13 N -0.340 5.340 14 C 0.312 3.688 15 O -0.399 6.399 16 C 0.054 3.946 17 F -0.158 7.158 18 C -0.209 4.209 19 C -0.030 4.030 20 O -0.277 6.277 21 C -0.044 4.044 22 C -0.018 4.018 23 C 0.010 3.990 24 H 0.152 0.848 25 N -0.065 5.065 26 C -0.202 4.202 27 C -0.211 4.211 28 N -0.136 5.136 29 N -0.042 5.042 30 H 0.071 0.929 31 H 0.231 0.769 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.194 0.806 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.075 -14.389 -6.214 17.631 hybrid contribution 0.189 0.654 -1.499 1.647 sum 8.264 -13.734 -7.713 17.788 Atomic orbital electron populations 1.69695 1.05188 1.26473 1.54462 1.24854 0.95492 0.98022 1.01189 0.86240 0.78599 0.83109 0.77973 1.21462 1.20902 1.21001 1.19104 0.91008 0.83443 1.46456 0.90721 1.42351 1.06393 0.98751 1.86883 1.21680 0.94745 0.86067 0.92387 0.88969 1.23928 1.03060 0.76471 1.02918 1.48485 1.50498 1.09841 1.25143 1.19989 0.78973 0.86438 0.83446 1.90709 1.60730 1.14045 1.74438 1.22431 0.90503 0.90332 0.91366 1.92970 1.71623 1.69916 1.81320 1.23562 0.97017 1.00365 0.99956 1.23471 0.93566 0.98604 0.87355 1.89223 1.45921 1.51990 1.40548 1.24025 0.83607 0.92421 1.04332 1.22217 0.97066 0.95037 0.87486 1.23149 0.76288 0.97486 1.02090 0.84762 1.47230 1.10024 1.37483 1.11790 1.23395 0.95551 1.08406 0.92862 1.23463 0.95792 1.03685 0.98137 1.75119 1.16294 1.16734 1.05451 1.78406 0.91935 1.14024 1.19797 0.92904 0.76900 0.90146 0.90042 0.86930 0.88292 0.87986 0.91390 0.89154 0.87143 0.88373 0.89907 0.80571 0.79949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.94 13.06 55.49 0.72 -26.22 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.27 -6.89 9.97 -15.06 -0.15 -7.04 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 9 N -0.70 -16.10 5.22 -51.36 -0.27 -16.37 16 10 C 0.17 2.77 3.56 -65.79 -0.23 2.54 16 11 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 12 C 0.06 0.91 5.00 -2.51 -0.01 0.90 16 13 N -0.61 -7.77 3.33 -170.48 -0.57 -8.34 16 14 C 0.53 7.01 6.82 -10.99 -0.07 6.94 16 15 O -0.52 -8.01 15.66 5.55 0.09 -7.92 16 16 C 0.08 0.88 1.19 -90.20 -0.11 0.77 16 17 F -0.18 -2.28 15.52 2.25 0.03 -2.25 16 18 C -0.17 -1.62 6.51 -25.16 -0.16 -1.79 16 19 C 0.05 0.40 7.63 37.94 0.29 0.69 16 20 O -0.36 -4.12 11.65 -35.23 -0.41 -4.53 16 21 C 0.03 0.37 6.14 37.93 0.23 0.60 16 22 C 0.11 1.24 5.91 -3.06 -0.02 1.23 16 23 C 0.11 1.62 3.96 -66.10 -0.26 1.35 16 24 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 25 N -0.27 -4.54 2.39 -52.98 -0.13 -4.67 16 26 C -0.05 -0.79 9.38 -17.05 -0.16 -0.95 16 27 C -0.05 -0.87 12.05 -17.73 -0.21 -1.09 16 28 N -0.27 -5.43 12.41 30.23 0.38 -5.06 16 29 N -0.06 -1.26 12.24 60.35 0.74 -0.52 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.39 10.03 5.94 -40.82 -0.24 9.79 16 32 H 0.08 1.35 7.60 -51.93 -0.39 0.96 16 33 H 0.08 1.16 6.15 -51.93 -0.32 0.84 16 34 H 0.11 1.18 6.55 -51.93 -0.34 0.84 16 35 H 0.10 0.78 8.06 -51.93 -0.42 0.36 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.87 8.13 -51.93 -0.42 0.45 16 39 H 0.11 1.19 7.16 -51.93 -0.37 0.82 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.96 7.18 -51.93 -0.37 0.59 16 42 H 0.18 2.27 7.71 -52.49 -0.40 1.87 16 43 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -33.24 355.34 -5.42 -38.66 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.37 Total: 11.45 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -0.97 Total: 4.16 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.88 Total: -61.18 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.32 Total: -12.45 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.25 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.24 -5.42 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070259338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.944 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds