Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99473 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.88527 * 34.29287 * 10 9 7 12 12 C 1.54912 * 111.00682 * 270.41968 * 10 9 7 13 13 N 1.47464 * 104.81498 * 204.94733 * 12 10 9 14 14 C 1.34774 * 125.62954 * 204.13642 * 13 12 10 15 15 O 1.21284 * 120.00032 * 179.97438 * 14 13 12 16 16 C 1.50702 * 120.00067 * 359.92079 * 14 13 12 17 17 F 1.39890 * 110.45575 * 312.60490 * 16 14 13 18 18 C 1.54507 * 110.50796 * 189.99949 * 16 14 13 19 19 C 1.54486 * 104.06241 * 241.35464 * 18 16 14 20 20 O 1.44419 * 104.80348 * 23.98072 * 19 18 16 21 21 C 1.44434 * 105.27650 * 319.49121 * 20 19 18 22 22 C 1.47025 * 108.72179 * 24.06946 * 13 12 10 23 23 C 1.54324 * 107.26770 * 358.97369 * 22 13 12 24 24 H 1.09007 * 110.71721 * 219.44040 * 23 22 13 25 25 N 1.46504 * 110.87042 * 96.24614 * 23 22 13 26 26 C 1.35312 * 125.86526 * 331.38397 * 25 23 22 27 27 C 1.35355 * 106.17411 * 180.02562 * 26 25 23 28 28 N 1.33772 * 106.49685 * 0.02562 * 27 26 25 29 29 N 1.28642 * 108.88176 * 359.73357 * 28 27 26 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 32 32 H 1.09002 * 110.36640 * 323.75210 * 12 10 9 33 33 H 1.09005 * 110.36760 * 86.06962 * 12 10 9 34 34 H 1.09001 * 110.51634 * 359.97438 * 18 16 14 35 35 H 1.09001 * 110.51193 * 122.71327 * 18 16 14 36 36 H 1.08996 * 110.37244 * 142.81688 * 19 18 16 37 37 H 1.09001 * 110.36828 * 265.15481 * 19 18 16 38 38 H 1.09000 * 110.37064 * 281.67940 * 21 20 19 39 39 H 1.08994 * 110.37497 * 159.34517 * 21 20 19 40 40 H 1.09002 * 109.88263 * 239.55872 * 22 13 12 41 41 H 1.08999 * 110.01372 * 118.46552 * 22 13 12 42 42 H 1.07999 * 126.91510 * 359.97438 * 26 25 23 43 43 H 1.07995 * 126.75478 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9809 -3.5727 0.5743 12 6 2.3447 -4.1324 -1.4456 13 7 2.4941 -5.5956 -1.3386 14 6 3.1777 -6.3797 -2.1954 15 8 3.2348 -7.5767 -2.0084 16 6 3.8703 -5.7694 -3.3866 17 9 3.0116 -4.8890 -4.0533 18 6 4.3676 -6.8724 -4.3475 19 6 5.9004 -6.6821 -4.3764 20 8 6.2130 -6.0158 -3.1338 21 6 5.1614 -5.0431 -2.9485 22 6 1.7753 -6.0571 -0.1420 23 6 1.1715 -4.8107 0.5389 24 1 1.2530 -4.8861 1.6233 25 7 -0.2250 -4.6220 0.1380 26 6 -0.7712 -5.0081 -1.0383 27 6 -2.0728 -4.6403 -0.9883 28 7 -2.2567 -4.0545 0.2002 29 7 -1.1439 -4.0642 0.8457 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.5089 -3.8836 -2.0996 33 1 3.2653 -3.6826 -1.8174 34 1 4.1129 -7.8592 -3.9608 35 1 3.9463 -6.7304 -5.3427 36 1 6.4019 -7.6485 -4.4254 37 1 6.1896 -6.0601 -5.2236 38 1 5.3373 -4.1699 -3.5767 39 1 5.0954 -4.7506 -1.9007 40 1 2.4679 -6.5523 0.5386 41 1 0.9799 -6.7458 -0.4270 42 1 -0.2693 -5.5082 -1.8534 43 1 -2.8167 -4.7903 -1.7566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070259338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -6.456405 kcal Electronic energy + Delta-G solvation = -31321.409862 eV Core-core repulsion = 26933.052552 eV Total energy + Delta-G solvation = -4388.357310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.14572 -44.24893 -41.52299 -40.08095 -38.94059 -36.05805 -35.02639 -33.11280 -32.88110 -31.95907 -31.24863 -29.99131 -29.25357 -26.39761 -25.54088 -24.53295 -23.64111 -23.42452 -22.63347 -21.50756 -20.72725 -19.53715 -19.07338 -18.55983 -17.97621 -17.80124 -17.19099 -16.94052 -16.57802 -16.37173 -16.20340 -15.97102 -15.62475 -15.44883 -15.30107 -15.21331 -14.83204 -14.67213 -14.47464 -14.31810 -13.93100 -13.67056 -13.29136 -13.07043 -12.97242 -12.75352 -12.71862 -12.62404 -12.54649 -12.47841 -12.15598 -11.92902 -11.89973 -11.81534 -11.36671 -11.16181 -10.91246 -10.82824 -10.26674 -10.00536 -9.17985 -7.97210 -5.32300 0.70188 1.09094 1.31990 1.48309 1.50302 1.53450 1.56790 1.70794 2.50174 2.68774 2.73230 2.92575 3.07183 3.16962 3.26694 3.46307 3.59861 3.67001 3.71927 3.95498 3.99066 4.06169 4.12441 4.14465 4.17272 4.32212 4.34280 4.42641 4.48777 4.51211 4.63327 4.69459 4.74569 4.80301 4.87820 4.96033 4.98301 5.29175 5.48291 5.54223 5.69831 6.06250 6.18307 6.65641 7.27734 7.60868 7.94600 8.16550 9.23730 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.004703 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.056502 B = 5952.817349 C = 7888.145132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.065 4.065 3 Si 0.973 3.027 4 H -0.304 1.304 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.254 4.254 8 H 0.091 0.909 9 N -0.723 5.723 10 C 0.157 3.843 11 H 0.109 0.891 12 C 0.082 3.918 13 N -0.601 5.601 14 C 0.527 3.473 15 O -0.541 6.541 16 C 0.070 3.930 17 F -0.186 7.186 18 C -0.167 4.167 19 C 0.044 3.956 20 O -0.378 6.378 21 C 0.035 3.965 22 C 0.113 3.887 23 C 0.115 3.885 24 H 0.149 0.851 25 N -0.267 5.267 26 C -0.042 4.042 27 C -0.061 4.061 28 N -0.309 5.309 29 N -0.105 5.105 30 H 0.250 0.750 31 H 0.380 0.620 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.203 0.797 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.373 -16.122 -8.965 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.259 4.259 3 Si 0.801 3.199 4 H -0.230 1.230 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.385 4.385 8 H 0.109 0.891 9 N -0.363 5.363 10 C 0.044 3.956 11 H 0.127 0.873 12 C -0.044 4.044 13 N -0.334 5.334 14 C 0.314 3.686 15 O -0.418 6.418 16 C 0.048 3.952 17 F -0.166 7.166 18 C -0.205 4.205 19 C -0.032 4.032 20 O -0.297 6.297 21 C -0.043 4.043 22 C -0.010 4.010 23 C 0.011 3.989 24 H 0.166 0.834 25 N -0.061 5.061 26 C -0.193 4.193 27 C -0.218 4.218 28 N -0.174 5.174 29 N -0.083 5.083 30 H 0.058 0.942 31 H 0.214 0.786 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.108 0.892 42 H 0.220 0.780 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.385 -15.969 -7.399 20.435 hybrid contribution -0.440 0.962 -1.177 1.582 sum 9.946 -15.007 -8.577 19.942 Atomic orbital electron populations 1.69883 1.06936 1.26200 1.58033 1.25632 0.96090 1.01378 1.02787 0.85240 0.77130 0.79056 0.78436 1.23038 1.20084 1.19861 1.19605 0.91829 0.84335 1.42688 0.89088 1.42491 1.06022 1.00243 1.87546 1.21962 0.95294 0.84574 0.93724 0.87322 1.23419 1.02658 0.77651 1.00674 1.48395 1.50603 1.08841 1.25567 1.20267 0.78535 0.86156 0.83661 1.90709 1.61373 1.14773 1.74978 1.22572 0.90403 0.90986 0.91201 1.92957 1.71987 1.70275 1.81399 1.23580 0.97826 0.98906 1.00183 1.23696 0.92854 0.99685 0.86926 1.89202 1.46104 1.52328 1.42042 1.24047 0.83071 0.92692 1.04494 1.22292 0.97628 0.93732 0.87378 1.23303 0.74912 0.97350 1.03290 0.83373 1.47415 1.10357 1.36472 1.11902 1.23809 0.95331 1.07401 0.92758 1.24107 0.97164 1.02792 0.97740 1.75053 1.16996 1.18101 1.07239 1.78334 0.92793 1.16017 1.21197 0.94152 0.78595 0.92080 0.89260 0.87924 0.86622 0.86399 0.89403 0.87948 0.87396 0.85795 0.89156 0.78043 0.76804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.53 13.06 21.65 0.28 -58.25 16 2 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 3 Si 0.97 44.13 29.55 68.60 2.03 46.15 16 4 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.25 -12.79 9.97 84.03 0.84 -11.95 16 8 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.72 -32.91 5.22 -316.39 -1.65 -34.56 16 10 C 0.16 4.98 3.56 46.38 0.17 5.14 16 11 H 0.11 3.11 8.11 -2.38 -0.02 3.09 16 12 C 0.08 2.25 5.00 86.85 0.43 2.69 16 13 N -0.60 -13.86 3.33 -811.67 -2.70 -16.56 16 14 C 0.53 12.75 6.82 87.66 0.60 13.35 16 15 O -0.54 -15.24 15.66 -3.04 -0.05 -15.29 16 16 C 0.07 1.46 1.19 -10.52 -0.01 1.45 16 17 F -0.19 -4.36 15.52 44.97 0.70 -3.66 16 18 C -0.17 -2.74 6.51 31.61 0.21 -2.53 16 19 C 0.04 0.62 7.63 72.49 0.55 1.17 16 20 O -0.38 -7.74 11.65 -148.98 -1.74 -9.48 16 21 C 0.03 0.67 6.14 72.48 0.45 1.11 16 22 C 0.11 2.34 5.91 86.73 0.51 2.85 16 23 C 0.11 3.05 3.96 46.18 0.18 3.24 16 24 H 0.15 3.53 8.14 -2.38 -0.02 3.51 16 25 N -0.27 -8.77 2.39 -321.53 -0.77 -9.54 16 26 C -0.04 -1.22 9.38 83.49 0.78 -0.44 16 27 C -0.06 -1.93 12.05 83.73 1.01 -0.92 16 28 N -0.31 -12.67 12.41 -58.26 -0.72 -13.39 16 29 N -0.10 -4.31 12.24 37.02 0.45 -3.85 16 30 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 31 H 0.38 19.62 5.94 -92.71 -0.55 19.06 16 32 H 0.06 1.97 7.60 -2.39 -0.02 1.95 16 33 H 0.09 2.34 6.15 -2.38 -0.01 2.32 16 34 H 0.10 1.92 6.55 -2.39 -0.02 1.90 16 35 H 0.12 1.48 8.06 -2.39 -0.02 1.46 16 36 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.71 8.13 -2.39 -0.02 1.69 16 39 H 0.11 2.08 7.16 -2.39 -0.02 2.06 16 40 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.09 1.83 7.18 -2.39 -0.02 1.81 16 42 H 0.20 4.72 7.71 -2.91 -0.02 4.69 16 43 H 0.22 5.05 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -73.67 355.34 2.53 -71.14 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.51 Total: 35.24 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.18 Total: 12.05 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -5.11 Total: -136.16 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.78 Total: -24.77 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.70 Total: -3.66 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.67 2.53 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070259338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.683 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds