Wall clock time and date at job start Sat Apr 11 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00333 * 2 1 4 4 H 1.48500 * 109.47008 * 240.00039 * 3 2 1 5 5 H 1.48499 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47512 * 119.99792 * 3 2 1 7 7 C 1.38813 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99682 * 175.52712 * 7 2 1 9 9 N 1.36932 * 120.00305 * 355.52944 * 7 2 1 10 10 C 1.46619 * 119.89325 * 214.53615 * 9 7 2 11 11 C 1.53102 * 108.05292 * 237.35248 * 10 9 7 12 12 C 1.53017 * 109.44588 * 300.99781 * 11 10 9 13 13 H 1.08994 * 113.42220 * 274.23032 * 12 11 10 14 14 C 1.54653 * 110.83251 * 143.88362 * 12 11 10 15 15 N 1.47802 * 85.79427 * 270.23040 * 14 12 11 16 16 C 1.34782 * 135.01080 * 153.83805 * 15 14 12 17 17 O 1.21550 * 119.99565 * 176.96324 * 16 15 14 18 18 C 1.47846 * 119.99985 * 356.96605 * 16 15 14 19 19 C 1.40599 * 120.27831 * 188.08257 * 18 16 15 20 20 N 1.30812 * 121.51932 * 179.97438 * 19 18 16 21 21 C 1.33757 * 121.80254 * 0.02562 * 20 19 18 22 22 N 1.33882 * 120.62241 * 180.02562 * 21 20 19 23 23 C 1.31334 * 119.84694 * 179.97438 * 22 21 20 24 24 C 1.39759 * 120.77343 * 359.97438 * 23 22 21 25 25 N 1.31306 * 120.55844 * 359.97438 * 24 23 22 26 26 C 1.33667 * 119.70188 * 0.04387 * 25 24 23 27 27 C 1.38900 * 120.27675 * 7.81508 * 18 16 15 28 28 C 1.46818 * 89.97603 * 333.81156 * 15 14 12 29 29 H 1.08999 * 111.55923 * 274.47585 * 28 15 14 30 30 C 1.45776 * 119.95601 * 34.58914 * 9 7 2 31 31 H 0.96997 * 119.99637 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.75478 * 117.69503 * 10 9 7 33 33 H 1.09003 * 109.75300 * 357.00114 * 10 9 7 34 34 H 1.08998 * 109.47629 * 60.98819 * 11 10 9 35 35 H 1.09000 * 109.47762 * 180.99860 * 11 10 9 36 36 H 1.08997 * 113.81996 * 24.45051 * 14 12 11 37 37 H 1.09000 * 113.81426 * 155.89108 * 14 12 11 38 38 H 1.08004 * 119.24104 * 0.02562 * 19 18 16 39 39 H 1.07993 * 119.61604 * 180.02562 * 23 22 21 40 40 H 1.08008 * 119.72251 * 180.02562 * 24 23 22 41 41 H 1.07995 * 121.00082 * 359.97438 * 27 18 16 42 42 H 1.08998 * 108.69911 * 19.73290 * 30 9 7 43 43 H 1.09002 * 108.69557 * 261.73263 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0878 -1.2037 -0.0724 9 7 1.3286 -2.3862 0.0935 10 6 1.9190 -3.5140 0.8210 11 6 2.0101 -4.7027 -0.1396 12 6 0.6112 -5.0522 -0.6519 13 1 0.0633 -5.7241 0.0086 14 6 0.6644 -5.5088 -2.1285 15 7 0.4785 -4.0812 -2.4631 16 6 0.7969 -3.2991 -3.5136 17 8 0.4560 -2.1324 -3.5280 18 6 1.5606 -3.8602 -4.6484 19 6 2.0422 -3.0167 -5.6649 20 7 2.7209 -3.4871 -6.6795 21 6 2.9910 -4.7913 -6.8030 22 7 3.6882 -5.2470 -7.8512 23 6 3.9453 -6.5306 -7.9570 24 6 3.4995 -7.4315 -6.9860 25 7 2.8148 -7.0097 -5.9481 26 6 2.5412 -5.7076 -5.8199 27 6 1.8130 -5.2244 -4.7163 28 6 -0.1972 -3.8684 -1.1771 29 1 -1.2597 -4.1033 -1.2393 30 6 0.0189 -2.5232 -0.5316 31 1 -0.4849 0.8400 -0.0004 32 1 1.2886 -3.7747 1.6710 33 1 2.9160 -3.2456 1.1705 34 1 2.6506 -4.4411 -0.9819 35 1 2.4306 -5.5615 0.3837 36 1 1.6319 -5.9095 -2.4308 37 1 -0.1708 -6.1443 -2.4230 38 1 1.8481 -1.9559 -5.6064 39 1 4.5083 -6.8941 -8.8038 40 1 3.7209 -8.4836 -7.0898 41 1 1.4590 -5.8946 -3.9470 42 1 -0.0883 -1.7492 -1.2915 43 1 -0.7483 -2.3725 0.2280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084414618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:05 Heat of formation + Delta-G solvation = 137.321821 kcal Electronic energy + Delta-G solvation = -29607.125041 eV Core-core repulsion = 25655.771647 eV Total energy + Delta-G solvation = -3951.353394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94459 -40.62579 -38.79165 -37.35067 -35.44665 -35.14943 -32.60563 -32.01643 -31.37641 -30.25118 -28.92386 -27.17543 -26.23325 -25.21223 -24.12441 -23.33446 -22.76143 -21.40599 -20.77224 -19.42519 -18.62062 -17.80755 -17.52240 -16.90257 -16.06645 -15.97546 -15.67484 -15.63696 -15.36756 -14.91582 -14.36936 -13.99977 -13.81369 -13.65419 -13.61272 -13.13285 -12.92016 -12.78991 -12.64132 -12.33213 -12.09328 -12.05762 -11.94516 -11.52452 -11.10118 -10.93048 -10.79810 -10.67264 -10.53451 -10.26158 -10.00488 -9.88624 -9.77621 -9.58037 -9.39025 -9.21553 -8.92777 -8.35518 -8.25225 -6.50367 -5.71167 -3.22342 -0.35744 -0.00717 1.46444 2.22153 2.96124 3.25679 3.30410 3.45059 3.49844 3.50443 3.57386 3.75347 3.82403 4.25789 4.35335 4.42112 4.54426 4.57237 4.63020 4.79191 4.94304 5.09747 5.14862 5.25819 5.39928 5.42438 5.50018 5.54380 5.64207 5.65814 5.80594 5.93653 6.08259 6.17850 6.25636 6.33100 6.47603 6.54328 6.63448 6.76110 6.96042 7.12541 7.47079 7.65674 7.80110 7.91000 8.08291 8.48913 8.60206 9.34182 9.93407 10.46660 11.36279 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.003656 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.035487 B = 7655.970374 C = 8713.377254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.019 3.981 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.059 0.941 9 N -0.586 5.586 10 C 0.148 3.852 11 C -0.119 4.119 12 C -0.106 4.106 13 H 0.090 0.910 14 C 0.079 3.921 15 N -0.622 5.622 16 C 0.580 3.420 17 O -0.501 6.501 18 C -0.151 4.151 19 C 0.216 3.784 20 N -0.460 5.460 21 C 0.268 3.732 22 N -0.418 5.418 23 C 0.107 3.893 24 C 0.068 3.932 25 N -0.407 5.407 26 C 0.019 3.981 27 C -0.014 4.014 28 C 0.127 3.873 29 H 0.076 0.924 30 C 0.164 3.836 31 H 0.254 0.746 32 H 0.021 0.979 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.189 0.811 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.169 0.831 42 H 0.109 0.891 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.269 -19.106 -10.108 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.181 4.181 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.390 4.390 8 H 0.077 0.923 9 N -0.309 5.309 10 C 0.021 3.979 11 C -0.159 4.159 12 C -0.126 4.126 13 H 0.108 0.892 14 C -0.044 4.044 15 N -0.358 5.358 16 C 0.367 3.633 17 O -0.376 6.376 18 C -0.159 4.159 19 C 0.039 3.961 20 N -0.168 5.168 21 C 0.028 3.972 22 N -0.133 5.133 23 C -0.072 4.072 24 C -0.108 4.108 25 N -0.122 5.122 26 C -0.107 4.107 27 C -0.041 4.041 28 C 0.023 3.977 29 H 0.094 0.906 30 C 0.038 3.962 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.206 0.794 39 H 0.200 0.800 40 H 0.199 0.801 41 H 0.186 0.814 42 H 0.127 0.873 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.241 -17.453 -10.880 20.820 hybrid contribution 0.202 0.041 0.360 0.415 sum 3.443 -17.412 -10.520 20.633 Atomic orbital electron populations 1.69935 1.05288 1.25551 1.53526 1.25256 0.95464 0.98143 0.99227 0.86400 0.79003 0.83536 0.77980 1.20919 1.21553 1.20973 1.18975 0.90478 0.83124 1.46381 0.92313 1.43451 1.18903 1.09916 1.58586 1.20765 0.97393 0.87659 0.92098 1.21889 0.93823 0.99441 1.00715 1.22867 0.98583 0.97003 0.94118 0.89150 1.23880 1.01140 0.84010 0.95370 1.49743 1.58425 1.09758 1.17828 1.17254 0.80240 0.85581 0.80244 1.90893 1.53448 1.15372 1.77861 1.21467 1.01768 0.94100 0.98529 1.23459 0.86097 1.01506 0.85012 1.67630 1.13767 1.12252 1.23195 1.20158 0.94980 0.90808 0.91205 1.68323 1.09590 1.15544 1.19823 1.24291 0.95376 0.88519 0.99055 1.24184 0.94073 1.02308 0.90278 1.68576 1.09005 1.13691 1.20909 1.20204 1.01640 0.91325 0.97510 1.22543 0.91302 0.95250 0.95002 1.22837 0.95291 0.99820 0.79709 0.90579 1.20259 0.87460 0.91340 0.97148 0.93539 0.96098 0.92505 0.92266 0.92600 0.90035 0.89617 0.79442 0.80027 0.80128 0.81397 0.87348 0.94872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 10.66 55.49 0.59 -25.93 16 2 C 0.02 0.53 5.30 -17.43 -0.09 0.44 16 3 Si 0.90 22.52 29.56 -169.99 -5.02 17.49 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.26 -7.25 9.44 -15.06 -0.14 -7.40 16 8 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 9 N -0.59 -14.49 3.02 -175.00 -0.53 -15.02 16 10 C 0.15 2.94 6.47 -3.92 -0.03 2.91 16 11 C -0.12 -1.88 5.66 -26.67 -0.15 -2.03 16 12 C -0.11 -1.50 4.39 -89.97 -0.40 -1.90 16 13 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 14 C 0.08 0.95 6.00 -3.01 -0.02 0.93 16 15 N -0.62 -10.53 3.34 -175.12 -0.59 -11.11 16 16 C 0.58 10.92 7.91 -12.33 -0.10 10.82 16 17 O -0.50 -11.65 15.56 5.32 0.08 -11.57 16 18 C -0.15 -2.36 5.88 -104.83 -0.62 -2.98 16 19 C 0.22 3.38 10.73 -17.10 -0.18 3.20 16 20 N -0.46 -7.41 10.39 -12.28 -0.13 -7.54 16 21 C 0.27 3.99 7.60 -157.61 -1.20 2.79 16 22 N -0.42 -5.46 10.55 -12.39 -0.13 -5.59 16 23 C 0.11 0.86 11.21 -17.20 -0.19 0.67 16 24 C 0.07 0.51 11.22 -17.21 -0.19 0.32 16 25 N -0.41 -4.55 10.46 -10.77 -0.11 -4.66 16 26 C 0.02 0.26 6.59 -84.78 -0.56 -0.30 16 27 C -0.01 -0.18 9.22 -38.38 -0.35 -0.54 16 28 C 0.13 2.27 4.22 -69.60 -0.29 1.98 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 C 0.16 3.91 4.59 -5.55 -0.03 3.88 16 31 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 34 H 0.06 1.04 7.69 -51.93 -0.40 0.64 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.89 6.01 -51.93 -0.31 0.58 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.19 2.81 7.65 -52.48 -0.40 2.41 16 39 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.18 0.51 8.06 -52.48 -0.42 0.09 16 41 H 0.17 1.92 3.89 -52.49 -0.20 1.72 16 42 H 0.11 3.06 5.04 -51.93 -0.26 2.80 16 43 H 0.03 0.86 7.93 -51.93 -0.41 0.44 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -36.04 350.37 -10.00 -46.04 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.91 Total: -0.20 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -4.54 Total: 12.80 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -0.89 Total: -69.85 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.04 -10.00 -46.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084414618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.361 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds