Wall clock time and date at job start Sat Apr 11 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00420 * 2 1 4 4 H 1.48500 * 109.46998 * 269.99461 * 3 2 1 5 5 H 1.48500 * 109.47160 * 29.99225 * 3 2 1 6 6 H 1.48494 * 109.47254 * 149.99350 * 3 2 1 7 7 C 1.38802 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07987 * 120.00196 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99570 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99850 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47197 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99681 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99955 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99820 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46871 * 179.97438 * 14 13 11 16 16 N 1.46901 * 109.46916 * 179.97438 * 15 14 13 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 15 19 19 C 1.35352 * 126.75162 * 95.00053 * 18 17 16 20 20 N 1.35308 * 106.17500 * 180.02562 * 19 18 17 21 21 C 1.46506 * 125.86713 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47261 * 124.99928 * 21 20 19 23 23 C 1.52997 * 117.49883 * 243.62237 * 22 21 20 24 24 C 1.52993 * 60.00107 * 252.50848 * 23 22 21 25 25 N 1.28710 * 108.26521 * 359.97438 * 20 19 18 26 26 N 1.28631 * 110.17763 * 359.72426 * 25 20 19 27 27 H 0.97005 * 119.99662 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46946 * 59.99703 * 10 9 7 29 29 H 1.09006 * 109.46691 * 299.99695 * 10 9 7 30 30 H 0.97000 * 120.00338 * 359.97438 * 13 11 10 31 31 H 1.08995 * 109.47316 * 60.00405 * 14 13 11 32 32 H 1.08996 * 109.47008 * 299.99302 * 14 13 11 33 33 H 1.09004 * 109.46889 * 60.00248 * 15 14 13 34 34 H 1.08995 * 109.47384 * 299.99888 * 15 14 13 35 35 H 1.00901 * 111.00067 * 303.95263 * 16 15 14 36 36 H 1.09001 * 109.46798 * 300.00327 * 17 16 15 37 37 H 1.08998 * 109.46961 * 60.00043 * 17 16 15 38 38 H 1.08003 * 126.91050 * 359.96350 * 19 18 17 39 39 H 1.09003 * 109.47051 * 245.00070 * 21 20 19 40 40 H 1.08998 * 109.47104 * 4.99609 * 21 20 19 41 41 H 1.09004 * 115.54994 * 29.32699 * 22 21 20 42 42 H 1.08996 * 117.50110 * 0.02562 * 23 22 21 43 43 H 1.09001 * 117.50004 * 145.01707 * 23 22 21 44 44 H 1.08997 * 117.50420 * 252.51164 * 24 23 22 45 45 H 1.09003 * 117.49823 * 107.48906 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0462 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8438 -6.3432 0.0003 14 6 2.3299 -7.7151 0.0003 15 6 3.5019 -8.6987 0.0001 16 7 2.9867 -10.0744 0.0007 17 6 4.0864 -11.0484 0.0012 18 6 3.5204 -12.4450 0.0012 19 6 3.3042 -13.2312 -1.0792 20 7 2.7893 -14.3894 -0.6056 21 6 2.3958 -15.5472 -1.4124 22 6 3.1216 -16.7941 -0.9032 23 6 4.1017 -17.4799 -1.8571 24 6 2.7555 -18.1351 -1.5424 25 7 2.7046 -14.2991 0.6756 26 7 3.1384 -13.1540 1.0693 27 1 -0.4850 0.8401 -0.0004 28 1 3.1242 -3.7315 0.8904 29 1 3.1242 -3.7315 -0.8895 30 1 3.8006 -6.1837 0.0006 31 1 1.7217 -7.8753 -0.8899 32 1 1.7211 -7.8751 0.8901 33 1 4.1106 -8.5387 0.8902 34 1 4.1105 -8.5386 -0.8898 35 1 2.3674 -10.2283 0.7823 36 1 4.6991 -10.9050 -0.8888 37 1 4.6990 -10.9043 0.8912 38 1 3.5019 -12.9835 -2.1117 39 1 1.3188 -15.6960 -1.3334 40 1 2.6627 -15.3715 -2.4545 41 1 3.3690 -16.7934 0.1583 42 1 4.2298 -17.0425 -2.8472 43 1 4.9944 -17.9304 -1.4232 44 1 2.7623 -19.0167 -0.9015 45 1 1.9975 -18.1290 -2.3257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:16 Heat of formation + Delta-G solvation = 87.279208 kcal Electronic energy + Delta-G solvation = -24445.505240 eV Core-core repulsion = 20627.425787 eV Total energy + Delta-G solvation = -3818.079453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.63885 -39.16419 -38.45003 -37.05398 -34.81767 -34.08174 -32.41049 -31.93858 -30.00052 -28.71523 -27.84612 -25.53336 -25.10660 -23.16925 -22.87774 -22.31125 -22.09588 -20.69497 -20.31722 -18.08719 -17.81423 -17.00499 -16.57382 -16.20154 -15.96464 -15.84279 -15.35018 -15.19184 -14.94490 -14.78892 -14.61768 -14.24543 -14.03040 -13.71319 -13.43803 -13.11155 -13.01310 -12.56774 -12.47774 -12.26717 -12.17570 -11.84697 -11.75502 -11.45603 -11.28699 -11.15428 -11.04775 -11.00606 -10.92864 -10.74756 -10.41653 -9.79935 -9.64857 -9.38127 -9.05254 -8.86139 -8.82352 -8.21142 -6.47807 -6.19824 -3.90249 1.20454 1.83175 2.10685 2.97178 3.02348 3.13624 3.23726 3.28673 3.32527 3.62076 3.66538 3.90685 4.02792 4.16325 4.22245 4.23749 4.24666 4.40082 4.54912 4.60765 4.65325 4.75293 4.91550 4.91723 5.03977 5.15297 5.15351 5.17516 5.20954 5.27070 5.36267 5.39949 5.51320 5.64237 5.73045 5.80263 5.92494 5.94528 6.14994 6.16180 6.51306 6.65637 6.96000 7.61332 7.72906 8.14667 8.37036 8.64695 9.25458 10.87644 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.048794 B = 0.001228 C = 0.001220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.707205 B =22790.594194 C =22949.713935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.050 3.950 16 N -0.683 5.683 17 C 0.148 3.852 18 C -0.021 4.021 19 C -0.028 4.028 20 N -0.289 5.289 21 C 0.148 3.852 22 C -0.177 4.177 23 C -0.176 4.176 24 C -0.164 4.164 25 N -0.083 5.083 26 N -0.264 5.264 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.397 0.603 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.350 0.650 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.191 0.809 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.900 -35.597 -5.647 37.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.079 4.079 16 N -0.315 5.315 17 C 0.018 3.982 18 C -0.159 4.159 19 C -0.179 4.179 20 N -0.082 5.082 21 C 0.027 3.973 22 C -0.196 4.196 23 C -0.213 4.213 24 C -0.201 4.201 25 N -0.062 5.062 26 N -0.131 5.131 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.169 0.831 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.208 0.792 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.210 -36.592 -5.035 38.068 hybrid contribution 3.002 1.775 -0.220 3.494 sum 12.212 -34.817 -5.256 37.269 Atomic orbital electron populations 1.70023 1.05961 1.27436 1.46882 1.24988 0.95012 0.99007 0.94540 0.86170 0.79416 0.81593 0.78335 1.20279 1.20754 1.19699 1.22873 0.94916 0.91685 1.58929 0.90927 1.85417 1.04952 0.96300 1.96714 1.23529 1.06556 0.95356 1.04933 1.20293 0.86511 0.86229 0.75187 1.90712 1.15363 1.85581 1.47357 1.45888 1.09937 1.05434 1.78141 1.21127 0.95712 0.80313 1.03046 1.22100 0.96674 0.87691 1.01484 1.60364 1.18479 1.01668 1.51018 1.20044 0.91988 0.84025 1.02188 1.21790 1.06445 0.98488 0.89168 1.23403 1.05305 0.87220 1.02015 1.47310 1.41081 1.13123 1.06727 1.21688 1.01094 0.80940 0.93597 1.22528 1.04387 0.92353 1.00339 1.23144 0.94243 1.03768 1.00110 1.22999 0.98823 0.95146 1.03165 1.78275 1.19546 1.15720 0.92675 1.75079 1.13070 0.98805 1.26139 0.92191 0.89211 0.89192 0.76897 0.90688 0.91744 0.94222 0.90077 0.83136 0.89081 0.93023 0.79216 0.87686 0.87432 0.86131 0.88281 0.88289 0.87954 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 10.03 7.85 -10.99 -0.09 9.95 16 12 O -0.52 -11.98 15.86 5.55 0.09 -11.89 16 13 N -0.74 -9.77 5.56 -60.29 -0.33 -10.11 16 14 C 0.12 1.44 5.93 -4.04 -0.02 1.42 16 15 C 0.05 0.41 5.80 -3.82 -0.02 0.39 16 16 N -0.68 -5.80 6.49 -115.05 -0.75 -6.55 16 17 C 0.15 1.08 6.25 -4.97 -0.03 1.05 16 18 C -0.02 -0.18 6.76 -82.78 -0.56 -0.74 16 19 C -0.03 -0.19 11.50 -17.05 -0.20 -0.39 16 20 N -0.29 -2.10 3.44 -61.26 -0.21 -2.31 16 21 C 0.15 0.52 6.74 -4.04 -0.03 0.49 16 22 C -0.18 -0.68 5.90 -90.62 -0.53 -1.21 16 23 C -0.18 -0.47 10.18 -26.74 -0.27 -0.74 16 24 C -0.16 -0.38 10.25 -26.74 -0.27 -0.66 16 25 N -0.08 -0.89 12.73 60.35 0.77 -0.12 16 26 N -0.26 -3.07 12.41 33.29 0.41 -2.66 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 30 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.35 3.27 8.72 -39.29 -0.34 2.93 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.19 0.62 8.06 -52.48 -0.42 0.19 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 0.10 7.80 -51.93 -0.41 -0.31 16 41 H 0.12 0.71 7.86 -51.93 -0.41 0.30 16 42 H 0.10 0.16 8.03 -51.93 -0.42 -0.26 16 43 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 402.22 15.07 6.06 6.06 Total: -1.00 -37.69 402.22 -9.03 -46.72 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.96 Total: 0.21 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.61 Total: -6.34 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.62 Total: -47.33 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.69 -9.03 -46.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.002 kcal (2) G-P(sol) polarization free energy of solvation -37.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds