Wall clock time and date at job start Sat Apr 11 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38646 * 120.79510 * 2 1 4 4 C 1.38189 * 119.17952 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.60532 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47331 * 124.99724 * 5 4 3 7 7 O 1.21284 * 120.00180 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00047 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99979 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47123 * 35.00778 * 9 8 6 11 11 C 1.53002 * 109.47520 * 275.00457 * 9 8 6 12 12 C 1.53003 * 109.47333 * 155.00547 * 9 8 6 13 13 C 1.53004 * 109.46807 * 295.00361 * 12 9 8 14 14 H 1.08995 * 109.47216 * 304.99653 * 13 12 9 15 15 C 1.52999 * 109.47083 * 184.99648 * 13 12 9 16 16 N 1.46498 * 109.47065 * 64.99542 * 13 12 9 17 17 C 1.36943 * 119.99752 * 204.72207 * 16 13 12 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 13 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 13 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 N 1.31881 * 120.79005 * 0.27156 * 4 3 2 26 26 C 1.31845 * 121.73954 * 359.43449 * 25 4 3 27 27 C 1.38353 * 120.74497 * 0.56892 * 26 25 4 28 28 Cl 1.73601 * 120.43547 * 179.74323 * 27 26 25 29 29 H 1.09000 * 109.47020 * 89.99975 * 1 2 3 30 30 H 1.08993 * 109.47043 * 210.00131 * 1 2 3 31 31 H 1.08999 * 109.47046 * 330.00175 * 1 2 3 32 32 H 1.08005 * 120.41342 * 359.95229 * 3 2 1 33 33 H 1.08998 * 109.47375 * 4.99475 * 5 4 3 34 34 H 1.09004 * 109.46545 * 244.99673 * 5 4 3 35 35 H 0.96999 * 119.99718 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47185 * 300.00284 * 11 9 8 37 37 H 1.09004 * 109.46882 * 60.00056 * 11 9 8 38 38 H 1.09000 * 109.47436 * 180.02562 * 11 9 8 39 39 H 1.08993 * 109.47316 * 175.00453 * 12 9 8 40 40 H 1.08998 * 109.46869 * 54.99922 * 12 9 8 41 41 H 1.08995 * 109.47098 * 300.00077 * 15 13 12 42 42 H 1.09003 * 109.47054 * 59.99725 * 15 13 12 43 43 H 1.08996 * 109.47245 * 179.97438 * 15 13 12 44 44 H 0.97001 * 120.00384 * 25.00562 * 16 13 12 45 45 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 46 46 H 1.08005 * 119.62945 * 180.28435 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1910 0.0000 4 6 3.5982 1.1520 0.0005 5 6 4.3793 2.4407 0.0011 6 6 5.3361 2.4477 1.1654 7 8 5.3798 1.4994 1.9201 8 7 6.1440 3.5075 1.3674 9 6 7.0737 3.5145 2.4995 10 1 7.4433 2.5037 2.6724 11 6 6.3494 4.0139 3.7512 12 6 8.2505 4.4412 2.1874 13 6 9.0485 3.8739 1.0116 14 1 9.3490 2.8506 1.2366 15 6 10.2939 4.7317 0.7793 16 7 8.2162 3.8846 -0.1939 17 6 8.4761 3.0077 -1.2131 18 1 9.2918 2.3052 -1.1262 19 6 7.6911 3.0217 -2.3579 20 7 7.9406 2.1785 -3.3372 21 14 6.2807 4.2372 -2.5084 22 1 6.7732 5.4923 -3.1309 23 1 5.2107 3.6515 -3.3551 24 1 5.7370 4.5342 -1.1588 25 7 4.2411 0.0005 -0.0043 26 6 3.6002 -1.1517 0.0012 27 6 2.2173 -1.1918 0.0006 28 17 1.3816 -2.7134 0.0012 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6967 2.1375 -0.0008 33 1 3.6922 3.2821 0.0905 34 1 4.9395 2.5264 -0.9301 35 1 6.1093 4.2658 0.7635 36 1 5.9799 5.0246 3.5783 37 1 5.5111 3.3536 3.9736 38 1 7.0413 4.0195 4.5935 39 1 8.8961 4.5159 3.0623 40 1 7.8746 5.4308 1.9275 41 1 9.9934 5.7550 0.5544 42 1 10.9131 4.7237 1.6763 43 1 10.8626 4.3273 -0.0580 44 1 7.4837 4.5156 -0.2720 45 1 7.3918 2.1880 -4.1371 46 1 4.1611 -2.0747 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134732541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:23 Heat of formation + Delta-G solvation = 1.867128 kcal Electronic energy + Delta-G solvation = -28104.541990 eV Core-core repulsion = 24248.422334 eV Total energy + Delta-G solvation = -3856.119656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50345 -39.24285 -37.01485 -36.63286 -34.33083 -33.93660 -32.76277 -32.18000 -30.85208 -29.14653 -28.01977 -27.74030 -26.39644 -23.35838 -23.29948 -22.24189 -20.71554 -20.51193 -19.51146 -17.56568 -17.14552 -16.67606 -16.48571 -16.09421 -15.38974 -14.82338 -14.74972 -14.49048 -14.32718 -13.75198 -13.45220 -13.32657 -13.26827 -12.97668 -12.84109 -12.81086 -12.57208 -12.45418 -12.21994 -12.04439 -11.90249 -11.77469 -11.71784 -11.62854 -11.25199 -11.04914 -10.87140 -10.75586 -10.52506 -10.26646 -9.99174 -9.60453 -9.52580 -9.42288 -9.21689 -8.99924 -8.73426 -8.47575 -7.24721 -5.76331 -3.10315 0.94712 1.19505 1.98735 3.04652 3.16695 3.28245 3.34581 3.53812 3.88430 4.35272 4.47532 4.50253 4.53455 4.88651 4.98551 5.10995 5.19936 5.23607 5.33027 5.33788 5.39761 5.43949 5.52019 5.56309 5.58870 5.68419 5.76040 5.86514 5.87335 5.89754 5.97581 6.03984 6.06243 6.15973 6.27754 6.34272 6.41694 6.49524 6.54787 6.80476 6.98676 7.05332 7.98154 8.02303 8.09314 8.41744 8.78616 9.18886 9.90403 10.10414 11.42849 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.003708 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.620427 B = 7549.304065 C = 8556.163982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.036 4.036 3 C -0.163 4.163 4 C 0.164 3.836 5 C -0.103 4.103 6 C 0.536 3.464 7 O -0.535 6.535 8 N -0.706 5.706 9 C 0.150 3.850 10 H 0.087 0.913 11 C -0.161 4.161 12 C -0.136 4.136 13 C 0.175 3.825 14 H 0.057 0.943 15 C -0.164 4.164 16 N -0.741 5.741 17 C -0.230 4.230 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.875 3.125 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.281 1.281 25 N -0.431 5.431 26 C 0.128 3.872 27 C -0.101 4.101 28 Cl -0.063 7.063 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.397 0.603 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.353 0.647 45 H 0.258 0.742 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 1.329 10.275 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.044 4.044 3 C -0.183 4.183 4 C 0.026 3.974 5 C -0.143 4.143 6 C 0.321 3.679 7 O -0.411 6.411 8 N -0.360 5.360 9 C 0.045 3.955 10 H 0.105 0.895 11 C -0.220 4.220 12 C -0.174 4.174 13 C 0.066 3.934 14 H 0.075 0.925 15 C -0.224 4.224 16 N -0.385 5.385 17 C -0.360 4.360 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.579 5.579 21 Si 0.708 3.292 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.209 1.209 25 N -0.139 5.139 26 C -0.031 4.031 27 C -0.130 4.130 28 Cl -0.035 7.035 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.234 0.766 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.187 0.813 45 H 0.068 0.932 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.042 0.335 10.662 16.088 hybrid contribution -1.905 1.146 -0.773 2.353 sum -13.947 1.480 9.890 17.161 Atomic orbital electron populations 1.20857 0.89526 1.03726 1.03269 1.20095 0.97132 0.91199 0.96002 1.21800 0.94233 0.98363 1.03953 1.20704 0.90369 0.93404 0.92909 1.20806 0.98313 0.94080 1.01090 1.19779 0.80864 0.82273 0.85012 1.90666 1.69130 1.34126 1.47203 1.46069 1.39148 1.20604 1.30216 1.20828 0.88831 1.00819 0.85042 0.89479 1.22202 1.01096 1.00953 0.97738 1.22242 0.96803 0.98672 0.99718 1.20242 0.89936 0.97529 0.85674 0.92519 1.22397 0.99286 1.00330 1.00421 1.42810 1.35694 1.42846 1.17152 1.19064 1.12837 1.10845 0.93248 0.89254 1.24622 0.98994 0.98764 0.96714 1.69667 1.41632 1.39015 1.07597 0.86877 0.83762 0.82031 0.76544 1.21433 1.21640 1.20864 1.67712 1.39393 0.97209 1.09628 1.22842 0.89074 0.97193 0.93985 1.22014 0.94072 0.87303 1.09605 1.98343 1.78290 1.29843 1.96997 0.90149 0.90517 0.90698 0.84128 0.87928 0.86308 0.76592 0.92957 0.92444 0.92016 0.90416 0.91941 0.93754 0.94253 0.92377 0.81330 0.93189 0.81923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.69 36.01 0.35 -0.71 16 2 C -0.04 -0.45 5.92 -104.28 -0.62 -1.07 16 3 C -0.16 -2.23 9.42 -39.45 -0.37 -2.60 16 4 C 0.16 2.84 5.76 -82.59 -0.48 2.37 16 5 C -0.10 -1.78 5.68 -29.04 -0.16 -1.94 16 6 C 0.54 10.14 7.73 -10.99 -0.08 10.06 16 7 O -0.53 -11.59 15.00 5.55 0.08 -11.51 16 8 N -0.71 -11.95 3.80 -53.81 -0.20 -12.15 16 9 C 0.15 2.28 2.57 -67.93 -0.17 2.11 16 10 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 11 C -0.16 -2.03 9.48 37.16 0.35 -1.68 16 12 C -0.14 -1.90 4.43 -26.73 -0.12 -2.01 16 13 C 0.18 3.13 2.89 -67.93 -0.20 2.93 16 14 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 15 C -0.16 -2.70 9.49 37.16 0.35 -2.34 16 16 N -0.74 -15.84 3.65 -53.43 -0.19 -16.04 16 17 C -0.23 -6.14 10.41 -15.06 -0.16 -6.29 16 18 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -28.55 13.97 55.49 0.78 -27.78 16 21 Si 0.88 20.10 25.17 -169.99 -4.28 15.82 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -5.35 4.62 56.52 0.26 -5.09 16 25 N -0.43 -8.33 9.24 -9.44 -0.09 -8.42 16 26 C 0.13 2.06 10.99 -17.50 -0.19 1.87 16 27 C -0.10 -1.39 6.34 -39.36 -0.25 -1.64 16 28 Cl -0.06 -0.73 27.48 -51.86 -1.42 -2.16 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.66 7.03 -51.93 -0.36 0.30 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.14 1.45 7.95 -52.48 -0.42 1.03 16 33 H 0.10 1.34 7.87 -51.93 -0.41 0.93 16 34 H 0.12 2.36 5.04 -51.93 -0.26 2.10 16 35 H 0.40 6.50 5.13 -40.82 -0.21 6.30 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.35 7.16 3.77 -40.82 -0.15 7.01 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 46 H 0.16 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -32.96 381.68 -8.40 -41.36 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -6.98 Total: 16.05 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.84 Total: -0.93 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.29 Total: -64.39 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.28 Total: 15.82 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.42 Total: -2.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.96 -8.40 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134732541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.227 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds