Wall clock time and date at job start Sat Apr 11 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47266 * 274.95868 * 3 2 1 5 5 H 1.48504 * 109.46927 * 34.95688 * 3 2 1 6 6 H 1.48497 * 109.47135 * 154.95417 * 3 2 1 7 7 C 1.37878 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00105 * 5.02751 * 7 2 1 9 9 C 1.50705 * 119.99563 * 185.02712 * 7 2 1 10 10 N 1.46500 * 109.46407 * 175.04230 * 9 7 2 11 11 C 1.46497 * 120.00316 * 274.86959 * 10 9 7 12 12 C 1.50704 * 109.47134 * 270.00542 * 11 10 9 13 13 C 1.38671 * 120.41740 * 269.71672 * 12 11 10 14 14 C 1.38632 * 118.42070 * 179.78057 * 13 12 11 15 15 C 1.38228 * 119.15716 * 0.52183 * 14 13 12 16 16 N 1.31853 * 120.76408 * 359.71968 * 15 14 13 17 17 C 1.31881 * 121.73012 * 359.97438 * 16 15 14 18 18 C 1.34786 * 119.99838 * 94.87563 * 10 9 7 19 19 O 1.21711 * 119.99939 * 185.23028 * 18 10 9 20 20 C 1.46666 * 119.99874 * 5.22804 * 18 10 9 21 21 C 1.36238 * 126.53594 * 75.24161 * 20 18 10 22 22 N 1.36421 * 110.04926 * 180.02562 * 21 20 18 23 23 N 1.39831 * 110.02584 * 359.97438 * 22 21 20 24 24 C 1.40739 * 133.19595 * 180.02562 * 23 22 21 25 25 C 1.32193 * 120.05247 * 179.76311 * 24 23 22 26 26 N 1.40751 * 120.44375 * 0.49542 * 25 24 23 27 27 C 1.40941 * 120.04068 * 359.46516 * 26 25 24 28 28 C 1.33204 * 119.59681 * 0.28057 * 27 26 25 29 29 H 0.96997 * 120.00268 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47178 * 55.04581 * 9 7 2 31 31 H 1.08997 * 109.46968 * 295.04025 * 9 7 2 32 32 H 1.09002 * 109.46864 * 30.00366 * 11 10 9 33 33 H 1.08994 * 109.47640 * 150.00625 * 11 10 9 34 34 H 1.07997 * 120.79097 * 0.02662 * 13 12 11 35 35 H 1.08003 * 120.42027 * 180.21974 * 14 13 12 36 36 H 1.07999 * 119.61755 * 179.74733 * 15 14 13 37 37 H 1.07993 * 119.62318 * 179.97438 * 17 16 15 38 38 H 1.07995 * 124.97222 * 0.02562 * 21 20 18 39 39 H 0.96999 * 124.98658 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.97184 * 359.97438 * 24 23 22 41 41 H 1.07996 * 119.77640 * 180.23589 * 25 24 23 42 42 H 0.96999 * 119.98190 * 179.74422 * 26 25 24 43 43 H 1.08002 * 120.20692 * 180.25869 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3918 2.1070 -1.3948 5 1 1.5028 2.6202 0.8022 6 1 3.5951 1.4123 0.5927 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1275 -0.0810 9 6 3.5072 -1.1964 0.1149 10 7 3.9873 -2.5771 0.2112 11 6 4.0302 -3.2487 1.5125 12 6 5.3690 -3.0044 2.1599 13 6 6.4234 -3.8787 1.9437 14 6 7.6381 -3.6117 2.5562 15 6 7.7538 -2.4968 3.3651 16 7 6.7280 -1.6899 3.5521 17 6 5.5597 -1.9093 2.9808 18 6 4.3897 -3.2295 -0.8975 19 8 4.6982 -4.4052 -0.8335 20 6 4.4559 -2.5227 -2.1809 21 6 5.4058 -1.6245 -2.5641 22 7 5.1414 -1.1731 -3.8241 23 7 3.9809 -1.7786 -4.3160 24 6 3.2804 -1.6729 -5.5320 25 6 2.1856 -2.3870 -5.7297 26 7 1.7056 -3.2491 -4.7259 27 6 2.3987 -3.3644 -3.5041 28 6 3.5047 -2.6493 -3.3052 29 1 -0.4850 0.8400 -0.0004 30 1 3.8046 -0.6453 1.0070 31 1 3.9394 -0.7220 -0.7662 32 1 3.2402 -2.8539 2.1513 33 1 3.8839 -4.3198 1.3736 34 1 6.3024 -4.7448 1.3100 35 1 8.4819 -4.2692 2.4071 36 1 8.6955 -2.2840 3.8491 37 1 4.7422 -1.2263 3.1579 38 1 6.2451 -1.3151 -1.9591 39 1 5.6795 -0.5270 -4.3077 40 1 3.6395 -1.0103 -6.3057 41 1 1.6537 -2.3052 -6.6660 42 1 0.8996 -3.7672 -4.8767 43 1 2.0350 -4.0282 -2.7337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149450607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:39 Heat of formation + Delta-G solvation = 128.304738 kcal Electronic energy + Delta-G solvation = -29501.435328 eV Core-core repulsion = 25549.690924 eV Total energy + Delta-G solvation = -3951.744404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.81071 -41.15965 -40.02774 -38.01931 -36.80623 -34.74335 -33.85072 -33.30742 -32.54854 -32.23811 -30.51553 -29.88399 -27.51543 -26.32403 -24.78885 -24.34725 -23.88676 -23.59928 -22.43268 -20.34206 -19.26435 -19.06723 -18.48678 -17.95539 -17.75176 -17.55823 -17.14248 -16.82480 -16.60056 -16.31293 -15.99319 -15.67681 -15.35827 -15.15915 -14.80691 -14.66906 -14.28616 -14.13551 -13.90506 -13.76800 -13.66801 -13.35973 -13.26031 -13.15587 -12.78082 -12.67636 -12.61222 -12.38007 -12.00857 -11.71169 -11.26286 -10.97230 -10.75969 -10.64160 -10.57528 -10.41349 -9.93240 -9.43276 -9.02773 -8.25828 -6.46783 -6.28378 0.16026 0.37367 0.55174 1.03349 1.35507 1.36403 1.46165 1.50712 1.74542 2.29555 2.34621 2.53413 2.80292 2.99304 3.09526 3.25470 3.58185 3.88673 3.91115 3.96149 4.12358 4.14661 4.21999 4.34554 4.46520 4.54164 4.66652 4.69204 4.75058 4.79270 4.82528 4.90134 4.95559 5.06147 5.25149 5.37879 5.43447 5.46714 5.51713 5.71983 5.82132 6.06067 6.24047 6.35437 6.65067 6.75483 6.82768 7.05428 7.12897 7.29377 7.40919 7.45337 8.91157 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.004878 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.487052 B = 5738.702317 C = 7252.062926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.019 3.981 3 Si 0.935 3.065 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.231 1.231 7 C -0.523 4.523 8 H 0.027 0.973 9 C 0.229 3.771 10 N -0.580 5.580 11 C 0.159 3.841 12 C -0.152 4.152 13 C -0.064 4.064 14 C -0.166 4.166 15 C 0.092 3.908 16 N -0.508 5.508 17 C 0.101 3.899 18 C 0.606 3.394 19 O -0.585 6.585 20 C -0.298 4.298 21 C 0.189 3.811 22 N -0.482 5.482 23 N -0.431 5.431 24 C -0.011 4.011 25 C 0.056 3.944 26 N -0.708 5.708 27 C -0.043 4.043 28 C 0.134 3.866 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.165 0.835 36 H 0.186 0.814 37 H 0.153 0.847 38 H 0.223 0.777 39 H 0.451 0.549 40 H 0.183 0.817 41 H 0.202 0.798 42 H 0.410 0.590 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.565 -1.363 -5.789 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.154 1.154 7 C -0.561 4.561 8 H 0.045 0.955 9 C 0.107 3.893 10 N -0.309 5.309 11 C 0.036 3.964 12 C -0.155 4.155 13 C -0.091 4.091 14 C -0.185 4.185 15 C -0.065 4.065 16 N -0.217 5.217 17 C -0.055 4.055 18 C 0.395 3.605 19 O -0.467 6.467 20 C -0.314 4.314 21 C 0.055 3.945 22 N -0.197 5.197 23 N -0.234 5.234 24 C -0.124 4.124 25 C -0.063 4.063 26 N -0.340 5.340 27 C -0.163 4.163 28 C 0.034 3.966 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.150 0.850 35 H 0.183 0.817 36 H 0.203 0.797 37 H 0.170 0.830 38 H 0.239 0.761 39 H 0.298 0.702 40 H 0.200 0.800 41 H 0.219 0.781 42 H 0.245 0.755 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.823 -0.830 -5.493 16.770 hybrid contribution -1.049 0.006 -0.705 1.264 sum 14.774 -0.824 -6.198 16.043 Atomic orbital electron populations 1.70064 1.08283 1.27846 1.52209 1.25685 0.95347 1.02686 0.94166 0.85915 0.80649 0.79163 0.78457 1.20373 1.20978 1.15360 1.21444 0.91710 0.93021 1.49968 0.95488 1.19516 0.92810 0.79154 0.97798 1.47916 1.61437 1.15568 1.05969 1.20157 0.93779 0.98534 0.83912 1.21180 0.97397 0.97360 0.99558 1.21746 0.92637 0.98360 0.96332 1.22446 0.98443 0.99566 0.98082 1.23329 0.97788 0.90338 0.95068 1.67735 1.00481 1.30855 1.22635 1.22737 0.95172 0.94932 0.92677 1.17317 0.75153 0.85061 0.82986 1.90656 1.52354 1.16903 1.86784 1.19183 1.03330 1.12959 0.95912 1.22531 0.97355 0.90202 0.84448 1.43118 1.18626 1.43957 1.13963 1.44039 1.20221 1.44476 1.14669 1.21035 0.96503 1.08008 0.86900 1.21841 0.95592 0.94007 0.94848 1.41804 1.30386 1.49105 1.12712 1.19750 0.96380 1.08206 0.92012 1.18301 0.95163 0.94694 0.88425 0.92680 0.94044 0.94089 0.89413 0.90155 0.84975 0.81701 0.79713 0.83020 0.76052 0.70168 0.79996 0.78142 0.75531 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 2 C 0.02 1.08 5.47 84.66 0.46 1.54 16 3 Si 0.93 41.80 27.59 68.60 1.89 43.70 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.23 -9.06 6.39 99.48 0.64 -8.43 16 7 C -0.52 -28.88 9.93 25.60 0.25 -28.63 16 8 H 0.03 1.72 8.06 -2.92 -0.02 1.70 16 9 C 0.23 10.12 4.14 85.63 0.35 10.47 16 10 N -0.58 -23.74 2.44 -835.21 -2.04 -25.78 16 11 C 0.16 5.79 5.62 85.63 0.48 6.27 16 12 C -0.15 -4.69 5.48 -19.77 -0.11 -4.80 16 13 C -0.06 -1.75 9.86 22.47 0.22 -1.52 16 14 C -0.17 -3.47 10.11 22.36 0.23 -3.25 16 15 C 0.09 2.00 11.18 84.69 0.95 2.95 16 16 N -0.51 -14.41 10.36 -195.85 -2.03 -16.44 16 17 C 0.10 3.07 10.86 84.67 0.92 3.99 16 18 C 0.61 25.52 7.52 86.44 0.65 26.17 16 19 O -0.59 -26.56 16.57 -4.38 -0.07 -26.64 16 20 C -0.30 -11.64 4.49 -19.01 -0.09 -11.73 16 21 C 0.19 5.46 10.85 83.51 0.91 6.36 16 22 N -0.48 -12.66 7.28 -56.16 -0.41 -13.07 16 23 N -0.43 -14.52 4.21 -181.11 -0.76 -15.28 16 24 C -0.01 -0.29 11.29 82.24 0.93 0.64 16 25 C 0.06 1.47 11.26 82.24 0.93 2.40 16 26 N -0.71 -23.46 5.72 -190.48 -1.09 -24.55 16 27 C -0.04 -1.82 11.36 82.09 0.93 -0.89 16 28 C 0.13 5.53 7.00 38.95 0.27 5.81 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.04 1.74 7.03 -2.39 -0.02 1.72 16 31 H 0.04 1.77 5.42 -2.39 -0.01 1.76 16 32 H 0.09 3.23 8.02 -2.39 -0.02 3.21 16 33 H 0.08 2.99 7.31 -2.39 -0.02 2.97 16 34 H 0.13 3.76 7.97 -2.91 -0.02 3.73 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.22 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.45 7.54 8.96 -213.49 -1.91 5.62 16 40 H 0.18 3.26 8.06 -2.91 -0.02 3.23 16 41 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 42 H 0.41 11.43 8.95 -92.71 -0.83 10.60 16 43 H 0.12 5.42 8.06 -2.91 -0.02 5.40 16 Total: -1.00 -83.12 371.60 2.34 -80.78 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -1.74 Total: 39.16 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 8.29 Total: 15.79 kcal Atomic # 7 Polarization: -146.76 SS G_CDS: -6.03 Total: -152.79 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.07 Total: -26.64 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.89 Total: 43.70 kcal Total: -83.12 2.34 -80.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149450607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.086 kcal (2) G-P(sol) polarization free energy of solvation -83.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds