Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46830 * 217.43352 * 3 2 1 5 5 N 1.46504 * 109.47046 * 180.02562 * 4 3 2 6 6 C 1.46493 * 120.00308 * 274.50514 * 5 4 3 7 7 C 1.50695 * 109.47566 * 273.84658 * 6 5 4 8 8 H 1.08006 * 119.99684 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00381 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00248 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00029 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46886 * 89.99974 * 11 9 7 13 13 H 1.48500 * 109.47110 * 210.00103 * 11 9 7 14 14 H 1.48505 * 109.46801 * 330.00525 * 11 9 7 15 15 C 1.34778 * 119.99540 * 94.50903 * 5 4 3 16 16 O 1.21602 * 120.00108 * 4.12468 * 15 5 4 17 17 C 1.47427 * 119.99601 * 184.13015 * 15 5 4 18 18 C 1.41291 * 126.41508 * 330.90088 * 17 15 5 19 19 N 1.30447 * 108.02273 * 180.02562 * 18 17 15 20 20 N 1.39941 * 108.89922 * 359.97438 * 19 18 17 21 21 C 1.46493 * 125.75384 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.47764 * 305.02381 * 21 20 19 23 23 C 1.38685 * 120.41505 * 89.99748 * 22 21 20 24 24 C 1.38623 * 118.42201 * 180.02562 * 23 22 21 25 25 C 1.38237 * 119.15928 * 0.02562 * 24 23 22 26 26 N 1.31854 * 120.76169 * 0.02562 * 25 24 23 27 27 C 1.31884 * 121.72861 * 359.97438 * 26 25 24 28 28 C 1.34260 * 108.48939 * 0.26509 * 20 19 18 29 29 H 1.09005 * 109.47279 * 97.44285 * 3 2 1 30 30 H 1.08991 * 109.47604 * 337.43523 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00739 * 4 3 2 32 32 H 1.09001 * 109.47211 * 300.00611 * 4 3 2 33 33 H 1.09002 * 109.46807 * 33.84493 * 6 5 4 34 34 H 1.09000 * 109.47630 * 153.83925 * 6 5 4 35 35 H 0.96996 * 120.00050 * 180.02562 * 10 9 7 36 36 H 1.07992 * 125.99044 * 0.03163 * 18 17 15 37 37 H 1.09002 * 109.46857 * 185.02401 * 21 20 19 38 38 H 1.09007 * 109.46989 * 65.03195 * 21 20 19 39 39 H 1.08002 * 120.78615 * 0.30066 * 23 22 21 40 40 H 1.07994 * 120.42137 * 180.02562 * 24 23 22 41 41 H 1.07991 * 119.61619 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.62063 * 180.02562 * 27 26 25 43 43 H 1.07999 * 126.29445 * 179.73516 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.1464 0.8769 5 7 4.5824 1.1475 0.8764 6 6 5.3159 0.3000 1.8197 7 6 5.4845 1.0317 3.1263 8 1 5.0855 2.0287 3.2422 9 6 6.1489 0.4290 4.1733 10 7 6.2964 1.0678 5.3134 11 14 6.8396 -1.2950 3.9726 12 1 8.2316 -1.2141 3.4617 13 1 6.8339 -1.9866 5.2867 14 1 6.0022 -2.0546 3.0097 15 6 5.2554 1.9283 0.0081 16 8 4.6489 2.6872 -0.7233 17 6 6.7268 1.8621 -0.0551 18 6 7.5979 1.5310 1.0069 19 7 8.8211 1.5822 0.5566 20 7 8.7916 1.9425 -0.7953 21 6 9.9605 2.1080 -1.6627 22 6 10.9132 3.0952 -1.0392 23 6 11.9084 2.6615 -0.1762 24 6 12.7617 3.6051 0.3743 25 6 12.5931 4.9377 0.0475 26 7 11.6348 5.3140 -0.7763 27 6 10.8050 4.4441 -1.3185 28 6 7.5119 2.1173 -1.1616 29 1 2.9713 0.1339 -1.0190 30 1 2.9718 -0.9481 0.3943 31 1 2.7542 1.0132 1.8959 32 1 2.7535 2.0952 0.4826 33 1 4.7591 -0.6217 1.9887 34 1 6.2964 0.0617 1.4076 35 1 6.7642 0.6439 6.0498 36 1 7.3028 1.2795 2.0149 37 1 9.6405 2.4775 -2.6370 38 1 10.4611 1.1474 -1.7850 39 1 12.0188 1.6129 0.0579 40 1 13.5481 3.3031 1.0500 41 1 13.2539 5.6790 0.4718 42 1 10.0324 4.7899 -1.9893 43 1 7.1609 2.4029 -2.1422 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197492576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = 121.493014 kcal Electronic energy + Delta-G solvation = -28259.781999 eV Core-core repulsion = 24307.742216 eV Total energy + Delta-G solvation = -3952.039782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15623 -40.22151 -38.88825 -36.66165 -35.36436 -34.65075 -32.97063 -32.33920 -31.57451 -30.85093 -29.66868 -28.01535 -26.80763 -24.31230 -23.78670 -22.83494 -22.60615 -21.26007 -20.51807 -18.73118 -17.63782 -17.35305 -17.01570 -16.88127 -16.61916 -15.89315 -15.81681 -15.47884 -14.74527 -14.65747 -14.43885 -14.20528 -13.97097 -13.78059 -13.52580 -13.43283 -13.22975 -12.97260 -12.72949 -12.63056 -12.54315 -12.33492 -12.13817 -11.85423 -11.71603 -11.26240 -11.10226 -10.76653 -10.64960 -10.55950 -10.33233 -10.02867 -9.75091 -9.70169 -9.36012 -9.23667 -9.16154 -8.82488 -8.28626 -7.89505 -6.32773 -4.36409 0.77022 1.09176 1.89524 2.63910 2.74905 2.85605 2.92274 3.13020 3.19221 3.22866 3.63478 3.65357 3.89644 4.14026 4.16586 4.27727 4.37280 4.46872 4.72202 4.72625 4.93082 4.97070 4.99040 5.11771 5.18003 5.29957 5.33536 5.40385 5.51693 5.61533 5.64922 5.85314 5.89891 6.02101 6.02749 6.26188 6.27483 6.34151 6.45040 6.60648 7.06639 7.09648 7.20128 7.33224 7.68488 7.74296 7.98309 8.01050 8.30630 8.75271 8.85838 9.23695 10.78615 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.003453 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.956596 B = 8106.317190 C = 9917.259616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.126 3.874 5 N -0.586 5.586 6 C 0.195 3.805 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.080 3.920 10 N -0.879 5.879 11 Si 0.860 3.140 12 H -0.267 1.267 13 H -0.281 1.281 14 H -0.260 1.260 15 C 0.599 3.401 16 O -0.571 6.571 17 C -0.277 4.277 18 C 0.090 3.910 19 N -0.308 5.308 20 N -0.373 5.373 21 C 0.181 3.819 22 C -0.161 4.161 23 C -0.037 4.037 24 C -0.176 4.176 25 C 0.105 3.895 26 N -0.488 5.488 27 C 0.119 3.881 28 C 0.107 3.893 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.269 0.731 36 H 0.228 0.772 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.844 -1.056 -13.536 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.000 4.000 5 N -0.315 5.315 6 C 0.073 3.927 7 C -0.586 4.586 8 H 0.102 0.898 9 C -0.125 4.125 10 N -0.515 5.515 11 Si 0.685 3.315 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.185 1.185 15 C 0.389 3.611 16 O -0.452 6.452 17 C -0.292 4.292 18 C -0.097 4.097 19 N -0.127 5.127 20 N -0.152 5.152 21 C 0.060 3.940 22 C -0.163 4.163 23 C -0.064 4.064 24 C -0.195 4.195 25 C -0.052 4.052 26 N -0.196 5.196 27 C -0.038 4.038 28 C -0.043 4.043 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.243 0.757 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.191 0.061 -13.708 17.696 hybrid contribution 0.159 -1.737 0.335 1.776 sum 11.350 -1.676 -13.373 17.620 Atomic orbital electron populations 1.81185 1.13071 1.09097 1.09257 1.29075 0.95096 0.92816 0.92748 1.19779 0.81395 1.03272 1.04235 1.21135 0.81036 0.97522 1.00280 1.47589 1.05140 1.43329 1.35403 1.20242 0.92988 0.90740 0.88680 1.21409 1.37916 1.04194 0.95048 0.89838 1.24905 0.95383 0.97322 0.94895 1.69878 1.40663 1.37736 1.03267 0.87094 0.80666 0.85182 0.78539 1.19213 1.20695 1.18482 1.17258 0.85622 0.79052 0.79176 1.90693 1.70043 1.39705 1.44773 1.20241 0.94414 1.19709 0.94861 1.25805 0.88156 0.93667 1.02067 1.77274 1.22526 1.23882 0.89023 1.48556 1.04539 1.52856 1.09263 1.20424 0.83517 0.98934 0.91150 1.20825 0.98266 0.95875 1.01364 1.21519 0.92064 1.00708 0.92073 1.22175 1.01241 0.94445 1.01672 1.22837 0.94486 0.94756 0.93116 1.67720 1.04277 1.38513 1.09097 1.22665 0.96055 0.88592 0.96537 1.22771 0.83822 0.97851 0.99858 0.87383 0.87127 0.89065 0.89358 0.94691 0.93784 0.92064 0.75696 0.87497 0.88665 0.84483 0.84535 0.82679 0.82889 0.80285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.28 18.54 42.15 0.78 -6.50 16 2 C 0.22 3.03 15.43 -20.76 -0.32 2.71 16 3 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 4 C 0.13 1.93 5.46 -4.04 -0.02 1.90 16 5 N -0.59 -10.50 2.46 -176.33 -0.43 -10.94 16 6 C 0.19 3.80 3.77 -5.20 -0.02 3.78 16 7 C -0.55 -13.04 7.97 -34.44 -0.27 -13.31 16 8 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 9 C 0.08 2.00 5.17 -17.82 -0.09 1.91 16 10 N -0.88 -24.03 13.96 55.43 0.77 -23.26 16 11 Si 0.86 18.26 27.36 -169.99 -4.65 13.61 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.26 -5.13 6.54 56.52 0.37 -4.76 16 15 C 0.60 11.26 7.62 -12.52 -0.10 11.16 16 16 O -0.57 -11.58 16.50 5.28 0.09 -11.49 16 17 C -0.28 -4.90 5.62 -105.06 -0.59 -5.49 16 18 C 0.09 1.72 9.55 -16.98 -0.16 1.55 16 19 N -0.31 -5.41 12.32 30.86 0.38 -5.03 16 20 N -0.37 -5.05 3.64 -61.99 -0.23 -5.27 16 21 C 0.18 1.62 6.64 -5.20 -0.03 1.59 16 22 C -0.16 -1.67 5.32 -104.48 -0.56 -2.23 16 23 C -0.04 -0.38 9.86 -39.27 -0.39 -0.77 16 24 C -0.18 -1.67 10.11 -39.44 -0.40 -2.07 16 25 C 0.10 1.08 11.18 -17.54 -0.20 0.89 16 26 N -0.49 -6.00 10.36 -13.25 -0.14 -6.14 16 27 C 0.12 1.32 10.86 -17.55 -0.19 1.13 16 28 C 0.11 1.49 11.36 -16.56 -0.19 1.31 16 29 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.43 8.11 -51.93 -0.42 1.00 16 32 H 0.09 1.41 7.24 -51.93 -0.38 1.04 16 33 H 0.04 0.65 7.16 -51.93 -0.37 0.28 16 34 H 0.04 0.86 4.10 -51.93 -0.21 0.65 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.23 4.88 3.99 -52.49 -0.21 4.67 16 37 H 0.11 0.59 8.01 -51.93 -0.42 0.18 16 38 H 0.10 0.70 8.10 -51.92 -0.42 0.28 16 39 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 43 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -32.69 377.48 -6.42 -39.11 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.98 Total: 6.88 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -3.71 Total: 3.33 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 1.14 Total: -57.13 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.65 Total: 13.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.69 -6.42 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197492576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.601 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds