Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46830 * 217.43352 * 3 2 1 5 5 N 1.46504 * 109.47046 * 180.02562 * 4 3 2 6 6 C 1.46493 * 120.00308 * 274.50514 * 5 4 3 7 7 C 1.50695 * 109.47566 * 273.84658 * 6 5 4 8 8 H 1.08006 * 119.99684 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00381 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00248 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00029 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46886 * 89.99974 * 11 9 7 13 13 H 1.48500 * 109.47110 * 210.00103 * 11 9 7 14 14 H 1.48505 * 109.46801 * 330.00525 * 11 9 7 15 15 C 1.34778 * 119.99540 * 94.50903 * 5 4 3 16 16 O 1.21602 * 120.00108 * 4.12468 * 15 5 4 17 17 C 1.47427 * 119.99601 * 184.13015 * 15 5 4 18 18 C 1.41291 * 126.41508 * 330.90088 * 17 15 5 19 19 N 1.30447 * 108.02273 * 180.02562 * 18 17 15 20 20 N 1.39941 * 108.89922 * 359.97438 * 19 18 17 21 21 C 1.46493 * 125.75384 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.47764 * 305.02381 * 21 20 19 23 23 C 1.38685 * 120.41505 * 89.99748 * 22 21 20 24 24 C 1.38623 * 118.42201 * 180.02562 * 23 22 21 25 25 C 1.38237 * 119.15928 * 0.02562 * 24 23 22 26 26 N 1.31854 * 120.76169 * 0.02562 * 25 24 23 27 27 C 1.31884 * 121.72861 * 359.97438 * 26 25 24 28 28 C 1.34260 * 108.48939 * 0.26509 * 20 19 18 29 29 H 1.09005 * 109.47279 * 97.44285 * 3 2 1 30 30 H 1.08991 * 109.47604 * 337.43523 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00739 * 4 3 2 32 32 H 1.09001 * 109.47211 * 300.00611 * 4 3 2 33 33 H 1.09002 * 109.46807 * 33.84493 * 6 5 4 34 34 H 1.09000 * 109.47630 * 153.83925 * 6 5 4 35 35 H 0.96996 * 120.00050 * 180.02562 * 10 9 7 36 36 H 1.07992 * 125.99044 * 0.03163 * 18 17 15 37 37 H 1.09002 * 109.46857 * 185.02401 * 21 20 19 38 38 H 1.09007 * 109.46989 * 65.03195 * 21 20 19 39 39 H 1.08002 * 120.78615 * 0.30066 * 23 22 21 40 40 H 1.07994 * 120.42137 * 180.02562 * 24 23 22 41 41 H 1.07991 * 119.61619 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.62063 * 180.02562 * 27 26 25 43 43 H 1.07999 * 126.29445 * 179.73516 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.1464 0.8769 5 7 4.5824 1.1475 0.8764 6 6 5.3159 0.3000 1.8197 7 6 5.4845 1.0317 3.1263 8 1 5.0855 2.0287 3.2422 9 6 6.1489 0.4290 4.1733 10 7 6.2964 1.0678 5.3134 11 14 6.8396 -1.2950 3.9726 12 1 8.2316 -1.2141 3.4617 13 1 6.8339 -1.9866 5.2867 14 1 6.0022 -2.0546 3.0097 15 6 5.2554 1.9283 0.0081 16 8 4.6489 2.6872 -0.7233 17 6 6.7268 1.8621 -0.0551 18 6 7.5979 1.5310 1.0069 19 7 8.8211 1.5822 0.5566 20 7 8.7916 1.9425 -0.7953 21 6 9.9605 2.1080 -1.6627 22 6 10.9132 3.0952 -1.0392 23 6 11.9084 2.6615 -0.1762 24 6 12.7617 3.6051 0.3743 25 6 12.5931 4.9377 0.0475 26 7 11.6348 5.3140 -0.7763 27 6 10.8050 4.4441 -1.3185 28 6 7.5119 2.1173 -1.1616 29 1 2.9713 0.1339 -1.0190 30 1 2.9718 -0.9481 0.3943 31 1 2.7542 1.0132 1.8959 32 1 2.7535 2.0952 0.4826 33 1 4.7591 -0.6217 1.9887 34 1 6.2964 0.0617 1.4076 35 1 6.7642 0.6439 6.0498 36 1 7.3028 1.2795 2.0149 37 1 9.6405 2.4775 -2.6370 38 1 10.4611 1.1474 -1.7850 39 1 12.0188 1.6129 0.0579 40 1 13.5481 3.3031 1.0500 41 1 13.2539 5.6790 0.4718 42 1 10.0324 4.7899 -1.9893 43 1 7.1609 2.4029 -2.1422 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197492576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = 100.722724 kcal Electronic energy + Delta-G solvation = -28260.682666 eV Core-core repulsion = 24307.742216 eV Total energy + Delta-G solvation = -3952.940450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.33867 -41.05753 -40.24404 -37.86750 -36.83054 -35.56417 -34.68114 -33.22839 -32.79531 -31.90302 -30.88410 -29.66204 -27.73571 -25.49391 -24.60945 -24.49660 -23.50921 -22.54782 -21.61895 -20.05825 -19.13319 -18.47738 -18.31058 -17.95981 -17.44870 -17.12707 -16.89609 -16.60443 -16.17143 -15.80380 -15.58249 -15.56888 -15.13479 -14.88596 -14.64375 -14.54843 -14.29487 -14.10394 -13.97065 -13.86857 -13.57364 -13.51573 -13.42940 -13.10702 -12.76855 -12.65563 -12.55934 -12.30160 -12.02012 -11.82014 -11.73187 -11.61244 -10.85651 -10.79250 -10.67123 -10.55931 -10.28292 -10.09069 -9.58395 -9.31794 -8.25222 -6.31817 -0.01373 0.31488 0.74689 1.34760 1.46150 1.47684 1.54893 1.63817 1.72571 1.82802 2.34910 2.38523 2.49751 2.86192 3.09465 3.22101 3.40572 3.57899 3.77570 3.90436 3.98925 4.02516 4.03898 4.15686 4.19296 4.35364 4.40091 4.48854 4.60719 4.61239 4.70874 4.81100 4.82461 4.83233 4.98091 5.01441 5.13537 5.14846 5.24864 5.49816 5.65152 5.71797 5.79552 6.05767 6.24332 6.59442 6.66566 6.72853 6.79560 6.96736 7.29408 7.44723 8.90406 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.003453 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.956596 B = 8106.317190 C = 9917.259616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.245 3.755 3 C -0.029 4.029 4 C 0.122 3.878 5 N -0.587 5.587 6 C 0.204 3.796 7 C -0.534 4.534 8 H 0.033 0.967 9 C 0.027 3.973 10 N -0.938 5.938 11 Si 0.921 3.079 12 H -0.265 1.265 13 H -0.290 1.290 14 H -0.225 1.225 15 C 0.597 3.403 16 O -0.591 6.591 17 C -0.312 4.312 18 C 0.069 3.931 19 N -0.326 5.326 20 N -0.357 5.357 21 C 0.173 3.827 22 C -0.167 4.167 23 C -0.051 4.051 24 C -0.179 4.179 25 C 0.092 3.908 26 N -0.519 5.519 27 C 0.105 3.895 28 C 0.135 3.865 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.267 0.733 36 H 0.197 0.803 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.176 0.824 42 H 0.169 0.831 43 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.135 -2.895 -16.501 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.072 4.072 3 C -0.070 4.070 4 C -0.003 4.003 5 N -0.316 5.316 6 C 0.082 3.918 7 C -0.573 4.573 8 H 0.051 0.949 9 C -0.173 4.173 10 N -0.577 5.577 11 Si 0.744 3.256 12 H -0.190 1.190 13 H -0.216 1.216 14 H -0.147 1.147 15 C 0.388 3.612 16 O -0.474 6.474 17 C -0.327 4.327 18 C -0.117 4.117 19 N -0.146 5.146 20 N -0.135 5.135 21 C 0.054 3.946 22 C -0.170 4.170 23 C -0.077 4.077 24 C -0.198 4.198 25 C -0.064 4.064 26 N -0.227 5.227 27 C -0.053 4.053 28 C -0.017 4.017 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.213 0.787 37 H 0.168 0.832 38 H 0.135 0.865 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.193 0.807 42 H 0.186 0.814 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 12.480 -1.790 -16.697 20.922 hybrid contribution -0.115 -0.985 1.208 1.563 sum 12.365 -2.775 -15.489 20.013 Atomic orbital electron populations 1.81215 1.14482 1.10580 1.10824 1.29277 0.95169 0.91431 0.91334 1.19730 0.79869 1.02749 1.04648 1.21184 0.79852 0.98656 1.00622 1.47575 1.05987 1.43129 1.34895 1.20063 0.94171 0.90862 0.86680 1.21504 1.36383 1.02281 0.97124 0.94904 1.25693 0.95758 1.01521 0.94283 1.70048 1.42991 1.40040 1.04630 0.86105 0.80461 0.80292 0.78754 1.18973 1.21628 1.14742 1.17481 0.86248 0.78575 0.78904 1.90671 1.70608 1.40358 1.45754 1.20281 0.93901 1.22515 0.95960 1.25281 0.89376 0.95603 1.01483 1.77169 1.21719 1.24334 0.91425 1.48865 1.05888 1.50617 1.08150 1.20977 0.82018 1.00005 0.91649 1.20964 0.98601 0.95918 1.01469 1.21819 0.92369 1.01391 0.92165 1.22472 1.01601 0.94112 1.01620 1.23265 0.94487 0.95801 0.92888 1.67719 1.05288 1.39558 1.10172 1.23012 0.96359 0.88972 0.96910 1.23306 0.83222 0.94869 1.00284 0.85397 0.84578 0.89969 0.90432 0.92530 0.92667 0.92360 0.78719 0.83162 0.86479 0.83628 0.82328 0.80699 0.81350 0.76173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.55 18.54 20.00 0.37 -15.18 16 2 C 0.24 6.32 15.43 89.44 1.38 7.70 16 3 C -0.03 -0.62 6.03 28.79 0.17 -0.44 16 4 C 0.12 3.63 5.46 86.38 0.47 4.10 16 5 N -0.59 -20.59 2.46 -830.04 -2.04 -22.63 16 6 C 0.20 7.75 3.77 85.63 0.32 8.08 16 7 C -0.53 -26.23 7.97 25.60 0.20 -26.03 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 9 C 0.03 1.39 5.17 84.65 0.44 1.83 16 10 N -0.94 -53.72 13.96 21.45 0.30 -53.42 16 11 Si 0.92 37.35 27.36 68.60 1.88 39.22 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 13 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.23 -7.77 6.54 99.48 0.65 -7.12 16 15 C 0.60 21.84 7.62 86.66 0.66 22.50 16 16 O -0.59 -23.28 16.50 -4.04 -0.07 -23.34 16 17 C -0.31 -10.55 5.62 -20.15 -0.11 -10.66 16 18 C 0.07 2.60 9.55 85.65 0.82 3.42 16 19 N -0.33 -10.98 12.32 -56.28 -0.69 -11.67 16 20 N -0.36 -8.49 3.64 -350.03 -1.27 -9.76 16 21 C 0.17 2.38 6.64 85.63 0.57 2.95 16 22 C -0.17 -3.06 5.32 -19.77 -0.11 -3.16 16 23 C -0.05 -0.95 9.86 22.47 0.22 -0.73 16 24 C -0.18 -3.14 10.11 22.36 0.23 -2.91 16 25 C 0.09 1.80 11.18 84.69 0.95 2.75 16 26 N -0.52 -12.23 10.36 -195.84 -2.03 -14.26 16 27 C 0.10 2.13 10.86 84.67 0.92 3.05 16 28 C 0.14 3.30 11.36 84.28 0.96 4.26 16 29 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 32 H 0.08 2.48 7.24 -2.39 -0.02 2.46 16 33 H 0.06 1.93 7.16 -2.39 -0.02 1.91 16 34 H 0.06 2.06 4.10 -2.39 -0.01 2.05 16 35 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.20 8.64 3.99 -2.91 -0.01 8.63 16 37 H 0.15 0.82 8.01 -2.39 -0.02 0.80 16 38 H 0.12 1.20 8.10 -2.38 -0.02 1.18 16 39 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 41 H 0.18 2.45 8.06 -2.92 -0.02 2.43 16 42 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 43 H 0.22 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -75.79 377.48 5.54 -70.25 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 1.00 Total: 24.11 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 8.09 Total: 16.69 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.36 Total: -126.93 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.07 Total: -23.34 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 1.88 Total: 39.22 kcal Total: -75.79 5.54 -70.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197492576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.976 kcal (2) G-P(sol) polarization free energy of solvation -75.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds