Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47211 * 278.99595 * 3 2 1 5 5 N 1.46500 * 109.47124 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99802 * 274.50166 * 5 4 3 7 7 C 1.50696 * 109.47020 * 273.84969 * 6 5 4 8 8 H 1.08003 * 120.00498 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99950 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99995 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00074 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46982 * 60.00419 * 11 9 7 13 13 H 1.48505 * 109.47335 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47043 * 300.00013 * 11 9 7 15 15 C 1.34774 * 120.00108 * 94.50047 * 5 4 3 16 16 O 1.21605 * 119.99795 * 4.12913 * 15 5 4 17 17 C 1.47423 * 119.99904 * 184.12428 * 15 5 4 18 18 C 1.41285 * 126.41992 * 330.88792 * 17 15 5 19 19 N 1.30445 * 108.02664 * 179.97438 * 18 17 15 20 20 N 1.39932 * 108.89824 * 359.97438 * 19 18 17 21 21 C 1.46495 * 125.75479 * 179.97438 * 20 19 18 22 22 C 1.50702 * 109.47482 * 305.03039 * 21 20 19 23 23 C 1.38216 * 119.62156 * 124.97839 * 22 21 20 24 24 C 1.38630 * 119.16089 * 179.79208 * 23 22 21 25 25 C 1.38671 * 118.42086 * 0.47171 * 24 23 22 26 26 C 1.38185 * 119.16088 * 359.50398 * 25 24 23 27 27 N 1.31861 * 119.61142 * 304.99831 * 22 21 20 28 28 C 1.34255 * 108.48838 * 0.26619 * 20 19 18 29 29 H 1.09004 * 109.46684 * 158.99818 * 3 2 1 30 30 H 1.09001 * 109.47130 * 38.99811 * 3 2 1 31 31 H 1.08999 * 109.46695 * 60.00282 * 4 3 2 32 32 H 1.09001 * 109.46726 * 300.00155 * 4 3 2 33 33 H 1.09007 * 109.47174 * 33.84815 * 6 5 4 34 34 H 1.08992 * 109.47190 * 153.84545 * 6 5 4 35 35 H 0.97001 * 120.00209 * 179.97438 * 10 9 7 36 36 H 1.08006 * 125.98491 * 0.03196 * 18 17 15 37 37 H 1.08998 * 109.47235 * 185.02658 * 21 20 19 38 38 H 1.09007 * 109.47049 * 65.02557 * 21 20 19 39 39 H 1.08004 * 120.42268 * 359.97438 * 23 22 21 40 40 H 1.08004 * 120.78744 * 180.22662 * 24 23 22 41 41 H 1.08000 * 120.42122 * 179.78484 * 25 24 23 42 42 H 1.07993 * 119.61579 * 180.25391 * 26 25 24 43 43 H 1.08008 * 126.28962 * 179.73912 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1182 -0.2247 1.4247 5 7 4.5832 -0.2234 1.4248 6 6 5.3167 -1.4564 1.1285 7 6 5.4859 -2.2567 2.3942 8 1 5.0873 -1.8840 3.3262 9 6 6.1505 -3.4643 2.3626 10 7 6.6372 -3.9175 1.2280 11 14 6.3608 -4.4560 3.9316 12 1 5.0254 -4.7959 4.4851 13 1 7.1054 -5.7054 3.6315 14 1 7.1194 -3.6549 4.9256 15 6 5.2561 0.9121 1.6974 16 8 4.6495 1.9165 2.0167 17 6 6.7274 0.9363 1.6086 18 6 7.5989 -0.1548 1.8233 19 7 8.8218 0.2655 1.6521 20 7 8.7919 1.6254 1.3240 21 6 9.9605 2.4668 1.0543 22 6 10.9145 2.3897 2.2184 23 6 12.2289 2.0218 2.0012 24 6 13.0994 1.9582 3.0783 25 6 12.6105 2.2589 4.3406 26 6 11.2838 2.6194 4.4806 27 7 10.4853 2.6738 3.4324 28 6 7.5121 2.0306 1.3043 29 1 2.9709 0.9603 -0.3683 30 1 2.9718 -0.7978 -0.6467 31 1 2.7553 -1.1842 1.7930 32 1 2.7545 0.5739 2.0714 33 1 4.7598 -2.0441 0.3987 34 1 6.2970 -1.2073 0.7224 35 1 7.1051 -4.7670 1.2058 36 1 7.3040 -1.1610 2.0827 37 1 9.6403 3.4993 0.9147 38 1 10.4602 2.1160 0.1513 39 1 12.5743 1.7897 1.0045 40 1 14.1328 1.6773 2.9381 41 1 13.2594 2.2162 5.2028 42 1 10.8964 2.8590 5.4597 43 1 7.1609 3.0287 1.0877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199572926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = 117.642163 kcal Electronic energy + Delta-G solvation = -28205.481649 eV Core-core repulsion = 24253.274882 eV Total energy + Delta-G solvation = -3952.206768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95949 -40.15869 -38.69261 -36.55874 -35.17822 -34.19073 -32.95085 -32.55117 -31.39671 -30.74746 -29.46917 -27.34119 -26.85186 -24.19279 -23.70279 -23.12248 -22.52779 -21.12346 -20.33146 -18.60225 -17.48374 -17.15536 -16.90744 -16.50632 -16.21059 -15.80544 -15.75357 -15.35953 -14.68984 -14.57845 -14.39306 -14.14071 -14.03963 -13.71686 -13.36946 -13.32829 -13.06536 -12.69457 -12.50759 -12.48585 -12.26919 -12.18948 -11.99278 -11.89285 -11.54420 -11.07179 -11.00314 -10.64185 -10.56715 -10.36104 -10.14687 -10.06052 -9.81908 -9.61373 -9.26688 -9.08999 -8.94102 -8.59873 -8.07387 -7.76358 -6.24869 -4.33528 0.84224 1.10571 2.10699 2.76625 2.90748 3.00795 3.02224 3.24618 3.29525 3.33296 3.63475 3.79634 4.00646 4.09138 4.31183 4.45428 4.47372 4.64245 4.76052 4.87107 4.96514 5.07284 5.11474 5.20553 5.32208 5.34298 5.43748 5.50507 5.61385 5.75330 5.81952 5.91672 5.95317 6.10207 6.18596 6.36825 6.46745 6.49965 6.70227 7.18638 7.27933 7.36207 7.51260 7.70855 7.77044 7.82604 7.99145 8.23026 8.30747 8.75924 9.04413 9.34571 10.79682 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.003457 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.715965 B = 8097.716561 C =10103.946309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.223 3.777 3 C -0.045 4.045 4 C 0.127 3.873 5 N -0.592 5.592 6 C 0.224 3.776 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.069 3.931 10 N -0.882 5.882 11 Si 0.893 3.107 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.598 3.402 16 O -0.577 6.577 17 C -0.280 4.280 18 C 0.097 3.903 19 N -0.310 5.310 20 N -0.366 5.366 21 C 0.189 3.811 22 C 0.116 3.884 23 C -0.153 4.153 24 C -0.076 4.076 25 C -0.171 4.171 26 C 0.103 3.897 27 N -0.464 5.464 28 C 0.113 3.887 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.268 0.732 36 H 0.231 0.769 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.832 11.527 -1.325 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.095 4.095 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.104 3.896 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.135 4.135 10 N -0.519 5.519 11 Si 0.720 3.280 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.387 3.613 16 O -0.459 6.459 17 C -0.295 4.295 18 C -0.090 4.090 19 N -0.129 5.129 20 N -0.145 5.145 21 C 0.066 3.934 22 C -0.023 4.023 23 C -0.173 4.173 24 C -0.102 4.102 25 C -0.191 4.191 26 C -0.054 4.054 27 N -0.173 5.173 28 C -0.037 4.037 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.173 0.827 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.422 11.862 -1.184 16.510 hybrid contribution 0.781 -0.834 0.784 1.385 sum 12.203 11.028 -0.400 16.453 Atomic orbital electron populations 1.81169 1.13123 1.09749 1.09016 1.29147 0.95155 0.92441 0.92785 1.19798 0.81187 1.05776 1.01924 1.21082 0.81621 1.03870 0.93327 1.47918 1.04994 1.11202 1.68005 1.19874 0.93252 0.79825 0.96678 1.21497 1.37248 1.04431 0.95179 0.91676 1.24951 0.95052 0.97081 0.96458 1.69907 1.36071 1.20819 1.25122 0.86620 0.78564 0.79442 0.83397 1.19992 1.21100 1.19894 1.17303 0.85701 0.82509 0.75745 1.90674 1.70130 1.34656 1.50466 1.20190 0.94299 0.94278 1.20717 1.25808 0.87988 1.01714 0.93467 1.77278 1.22690 0.88926 1.23975 1.48228 1.04278 1.08324 1.53669 1.20437 0.83712 0.94717 0.94516 1.21148 0.92355 0.95858 0.92939 1.21905 0.94144 1.00661 1.00602 1.21558 1.00112 0.96048 0.92490 1.22180 0.97468 1.01116 0.98342 1.22760 0.90124 0.95047 0.97510 1.67432 1.37977 1.13004 0.98843 1.22681 0.83816 0.99067 0.98142 0.87462 0.86940 0.89425 0.89737 0.94540 0.92665 0.92194 0.75315 0.87148 0.88077 0.84538 0.84696 0.84766 0.82700 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.66 18.54 42.15 0.78 -6.88 16 2 C 0.22 3.25 15.43 -20.76 -0.32 2.93 16 3 C -0.05 -0.60 6.03 -29.51 -0.18 -0.77 16 4 C 0.13 2.06 5.46 -4.04 -0.02 2.03 16 5 N -0.59 -11.31 2.46 -176.34 -0.43 -11.74 16 6 C 0.22 4.78 4.70 -5.20 -0.02 4.75 16 7 C -0.55 -13.00 7.41 -34.44 -0.26 -13.25 16 8 H 0.07 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 10 N -0.88 -22.58 13.29 55.43 0.74 -21.84 16 11 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 C 0.60 12.01 7.62 -12.52 -0.10 11.91 16 16 O -0.58 -12.42 16.50 5.27 0.09 -12.33 16 17 C -0.28 -5.41 5.62 -105.07 -0.59 -6.00 16 18 C 0.10 2.02 9.55 -16.98 -0.16 1.85 16 19 N -0.31 -6.04 12.32 30.86 0.38 -5.66 16 20 N -0.37 -5.73 3.59 -61.99 -0.22 -5.95 16 21 C 0.19 2.06 6.87 -5.20 -0.04 2.03 16 22 C 0.12 1.40 6.23 -82.59 -0.51 0.89 16 23 C -0.15 -1.50 9.71 -39.44 -0.38 -1.88 16 24 C -0.08 -0.67 10.18 -39.28 -0.40 -1.06 16 25 C -0.17 -1.56 10.11 -39.44 -0.40 -1.96 16 26 C 0.10 1.17 11.18 -17.55 -0.20 0.97 16 27 N -0.46 -6.43 10.22 -9.48 -0.10 -6.53 16 28 C 0.11 1.82 11.36 -16.56 -0.19 1.63 16 29 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 32 H 0.08 1.42 7.24 -51.93 -0.38 1.04 16 33 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.06 1.25 4.67 -51.93 -0.24 1.00 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.23 5.33 4.09 -52.48 -0.21 5.12 16 37 H 0.11 0.89 8.06 -51.93 -0.42 0.47 16 38 H 0.10 0.86 7.87 -51.92 -0.41 0.45 16 39 H 0.14 0.99 7.95 -52.48 -0.42 0.57 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.18 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -32.19 381.12 -6.90 -39.09 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.00 Total: 5.66 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -3.86 Total: 5.68 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 1.15 Total: -58.60 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.19 -6.90 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199572926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.737 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds