Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47211 * 278.99595 * 3 2 1 5 5 N 1.46500 * 109.47124 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99802 * 274.50166 * 5 4 3 7 7 C 1.50696 * 109.47020 * 273.84969 * 6 5 4 8 8 H 1.08003 * 120.00498 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99950 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99995 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00074 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46982 * 60.00419 * 11 9 7 13 13 H 1.48505 * 109.47335 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47043 * 300.00013 * 11 9 7 15 15 C 1.34774 * 120.00108 * 94.50047 * 5 4 3 16 16 O 1.21605 * 119.99795 * 4.12913 * 15 5 4 17 17 C 1.47423 * 119.99904 * 184.12428 * 15 5 4 18 18 C 1.41285 * 126.41992 * 330.88792 * 17 15 5 19 19 N 1.30445 * 108.02664 * 179.97438 * 18 17 15 20 20 N 1.39932 * 108.89824 * 359.97438 * 19 18 17 21 21 C 1.46495 * 125.75479 * 179.97438 * 20 19 18 22 22 C 1.50702 * 109.47482 * 305.03039 * 21 20 19 23 23 C 1.38216 * 119.62156 * 124.97839 * 22 21 20 24 24 C 1.38630 * 119.16089 * 179.79208 * 23 22 21 25 25 C 1.38671 * 118.42086 * 0.47171 * 24 23 22 26 26 C 1.38185 * 119.16088 * 359.50398 * 25 24 23 27 27 N 1.31861 * 119.61142 * 304.99831 * 22 21 20 28 28 C 1.34255 * 108.48838 * 0.26619 * 20 19 18 29 29 H 1.09004 * 109.46684 * 158.99818 * 3 2 1 30 30 H 1.09001 * 109.47130 * 38.99811 * 3 2 1 31 31 H 1.08999 * 109.46695 * 60.00282 * 4 3 2 32 32 H 1.09001 * 109.46726 * 300.00155 * 4 3 2 33 33 H 1.09007 * 109.47174 * 33.84815 * 6 5 4 34 34 H 1.08992 * 109.47190 * 153.84545 * 6 5 4 35 35 H 0.97001 * 120.00209 * 179.97438 * 10 9 7 36 36 H 1.08006 * 125.98491 * 0.03196 * 18 17 15 37 37 H 1.08998 * 109.47235 * 185.02658 * 21 20 19 38 38 H 1.09007 * 109.47049 * 65.02557 * 21 20 19 39 39 H 1.08004 * 120.42268 * 359.97438 * 23 22 21 40 40 H 1.08004 * 120.78744 * 180.22662 * 24 23 22 41 41 H 1.08000 * 120.42122 * 179.78484 * 25 24 23 42 42 H 1.07993 * 119.61579 * 180.25391 * 26 25 24 43 43 H 1.08008 * 126.28962 * 179.73912 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1182 -0.2247 1.4247 5 7 4.5832 -0.2234 1.4248 6 6 5.3167 -1.4564 1.1285 7 6 5.4859 -2.2567 2.3942 8 1 5.0873 -1.8840 3.3262 9 6 6.1505 -3.4643 2.3626 10 7 6.6372 -3.9175 1.2280 11 14 6.3608 -4.4560 3.9316 12 1 5.0254 -4.7959 4.4851 13 1 7.1054 -5.7054 3.6315 14 1 7.1194 -3.6549 4.9256 15 6 5.2561 0.9121 1.6974 16 8 4.6495 1.9165 2.0167 17 6 6.7274 0.9363 1.6086 18 6 7.5989 -0.1548 1.8233 19 7 8.8218 0.2655 1.6521 20 7 8.7919 1.6254 1.3240 21 6 9.9605 2.4668 1.0543 22 6 10.9145 2.3897 2.2184 23 6 12.2289 2.0218 2.0012 24 6 13.0994 1.9582 3.0783 25 6 12.6105 2.2589 4.3406 26 6 11.2838 2.6194 4.4806 27 7 10.4853 2.6738 3.4324 28 6 7.5121 2.0306 1.3043 29 1 2.9709 0.9603 -0.3683 30 1 2.9718 -0.7978 -0.6467 31 1 2.7553 -1.1842 1.7930 32 1 2.7545 0.5739 2.0714 33 1 4.7598 -2.0441 0.3987 34 1 6.2970 -1.2073 0.7224 35 1 7.1051 -4.7670 1.2058 36 1 7.3040 -1.1610 2.0827 37 1 9.6403 3.4993 0.9147 38 1 10.4602 2.1160 0.1513 39 1 12.5743 1.7897 1.0045 40 1 14.1328 1.6773 2.9381 41 1 13.2594 2.2162 5.2028 42 1 10.8964 2.8590 5.4597 43 1 7.1609 3.0287 1.0877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199572926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = 98.571911 kcal Electronic energy + Delta-G solvation = -28206.308598 eV Core-core repulsion = 24253.274882 eV Total energy + Delta-G solvation = -3953.033716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.25709 -41.02708 -40.16748 -37.85256 -36.75791 -35.21953 -34.65939 -33.32106 -32.71357 -31.90172 -30.80437 -29.06302 -27.89805 -25.49307 -24.89483 -24.46617 -23.45337 -22.53218 -21.57017 -20.05236 -18.83788 -18.31896 -18.20022 -17.83952 -17.16970 -17.06038 -16.85224 -16.57126 -16.24176 -15.85749 -15.69425 -15.46428 -15.21713 -14.85842 -14.56877 -14.30810 -14.23583 -14.10232 -13.79182 -13.77099 -13.54869 -13.42289 -13.34826 -12.99585 -12.77193 -12.68386 -12.62844 -12.31642 -12.05880 -11.78958 -11.72226 -11.61105 -10.81983 -10.72584 -10.52621 -10.43233 -10.23678 -10.00828 -9.53670 -9.28341 -8.14323 -6.26319 0.07395 0.37266 0.79955 1.43223 1.46026 1.48010 1.53401 1.64163 1.72835 1.82027 2.36721 2.44372 2.62480 2.84378 3.15655 3.21219 3.25712 3.72187 3.80735 3.99314 4.04724 4.09089 4.20645 4.21724 4.23366 4.36491 4.40618 4.49407 4.62218 4.65208 4.77987 4.81428 4.87790 5.01737 5.07918 5.11071 5.19188 5.25792 5.41079 5.73104 5.76558 5.81484 5.95063 6.10084 6.15699 6.58500 6.64694 6.80530 6.91997 7.03637 7.39686 7.52598 8.88908 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.003457 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.715965 B = 8097.716561 C =10103.946309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.247 3.753 3 C -0.030 4.030 4 C 0.123 3.877 5 N -0.591 5.591 6 C 0.239 3.761 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.036 3.964 10 N -0.906 5.906 11 Si 0.937 3.063 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.280 1.280 15 C 0.597 3.403 16 O -0.595 6.595 17 C -0.312 4.312 18 C 0.079 3.921 19 N -0.330 5.330 20 N -0.351 5.351 21 C 0.176 3.824 22 C 0.089 3.911 23 C -0.155 4.155 24 C -0.079 4.079 25 C -0.167 4.167 26 C 0.077 3.923 27 N -0.505 5.505 28 C 0.133 3.867 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.268 0.732 36 H 0.202 0.798 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.610 12.709 -1.955 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.002 4.002 5 N -0.319 5.319 6 C 0.118 3.882 7 C -0.582 4.582 8 H 0.070 0.930 9 C -0.166 4.166 10 N -0.544 5.544 11 Si 0.764 3.236 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.205 1.205 15 C 0.388 3.612 16 O -0.479 6.479 17 C -0.326 4.326 18 C -0.107 4.107 19 N -0.150 5.150 20 N -0.129 5.129 21 C 0.056 3.944 22 C -0.049 4.049 23 C -0.175 4.175 24 C -0.105 4.105 25 C -0.187 4.187 26 C -0.080 4.080 27 N -0.215 5.215 28 C -0.019 4.019 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.218 0.782 37 H 0.160 0.840 38 H 0.147 0.853 39 H 0.180 0.820 40 H 0.185 0.815 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 13.207 13.035 -1.810 18.644 hybrid contribution 0.387 -1.098 1.026 1.552 sum 13.593 11.937 -0.784 18.108 Atomic orbital electron populations 1.81197 1.14294 1.11236 1.10200 1.29231 0.95084 0.91144 0.91598 1.19704 0.80011 1.07324 1.00026 1.21165 0.80105 1.03545 0.95340 1.47847 1.05981 1.10327 1.67795 1.19543 0.93074 0.80197 0.95344 1.21617 1.36495 1.04555 0.95548 0.93049 1.25415 0.95091 0.97928 0.98204 1.69968 1.37046 1.21130 1.26259 0.85926 0.78347 0.78387 0.80968 1.19745 1.20781 1.20539 1.17444 0.86139 0.82331 0.75323 1.90651 1.70603 1.35117 1.51530 1.20256 0.94042 0.95101 1.23240 1.25316 0.89075 1.01193 0.95150 1.77153 1.22085 0.91317 1.24475 1.48532 1.05633 1.07273 1.51428 1.21023 0.82401 0.95651 0.95306 1.21373 0.93624 0.97161 0.92706 1.22255 0.93470 0.99540 1.02261 1.22023 1.01522 0.94964 0.91978 1.22510 0.96846 0.99596 0.99742 1.23073 0.91307 0.96071 0.97560 1.67358 1.39560 1.14538 1.00020 1.23163 0.83497 0.99533 0.95748 0.85791 0.85279 0.89782 0.90260 0.94877 0.93488 0.92305 0.78153 0.84017 0.85315 0.82034 0.81537 0.82009 0.81944 0.77111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.27 18.54 20.01 0.37 -15.90 16 2 C 0.25 6.91 15.43 89.44 1.38 8.29 16 3 C -0.03 -0.73 6.03 28.79 0.17 -0.56 16 4 C 0.12 3.95 5.46 86.38 0.47 4.42 16 5 N -0.59 -22.60 2.46 -830.06 -2.04 -24.64 16 6 C 0.24 10.37 4.70 85.63 0.40 10.78 16 7 C -0.54 -26.46 7.41 25.60 0.19 -26.27 16 8 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 9 C 0.04 1.78 5.15 84.65 0.44 2.22 16 10 N -0.91 -46.99 13.29 21.45 0.28 -46.70 16 11 Si 0.94 41.03 29.54 68.60 2.03 43.06 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 15 C 0.60 23.90 7.62 86.66 0.66 24.56 16 16 O -0.60 -25.28 16.50 -4.05 -0.07 -25.34 16 17 C -0.31 -12.00 5.62 -20.15 -0.11 -12.12 16 18 C 0.08 3.34 9.55 85.65 0.82 4.16 16 19 N -0.33 -12.86 12.32 -56.28 -0.69 -13.55 16 20 N -0.35 -10.42 3.59 -350.02 -1.26 -11.68 16 21 C 0.18 3.40 6.87 85.63 0.59 3.99 16 22 C 0.09 2.01 6.23 42.55 0.27 2.28 16 23 C -0.16 -2.65 9.71 22.36 0.22 -2.43 16 24 C -0.08 -1.16 10.18 22.47 0.23 -0.93 16 25 C -0.17 -2.70 10.11 22.36 0.23 -2.48 16 26 C 0.08 1.69 11.18 84.67 0.95 2.64 16 27 N -0.50 -13.65 10.22 -183.89 -1.88 -15.53 16 28 C 0.13 4.05 11.36 84.28 0.96 5.01 16 29 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 32 H 0.08 2.64 7.24 -2.39 -0.02 2.62 16 33 H 0.03 1.46 8.10 -2.38 -0.02 1.44 16 34 H 0.05 2.17 4.67 -2.39 -0.01 2.16 16 35 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 36 H 0.20 9.72 4.09 -2.91 -0.01 9.71 16 37 H 0.14 1.80 8.06 -2.39 -0.02 1.78 16 38 H 0.13 1.76 7.87 -2.38 -0.02 1.74 16 39 H 0.16 1.79 7.95 -2.91 -0.02 1.76 16 40 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.21 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -71.25 381.12 5.65 -65.60 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 1.05 Total: 21.11 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 7.85 Total: 23.57 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -5.21 Total: -128.00 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.07 Total: -25.34 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -71.25 5.65 -65.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199572926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.174 kcal (2) G-P(sol) polarization free energy of solvation -71.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds