Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00501 * 2 1 4 4 C 1.50701 * 109.47249 * 180.02562 * 3 2 1 5 5 N 1.28640 * 124.71796 * 90.00284 * 4 3 2 6 6 C 1.33564 * 115.76385 * 179.73244 * 5 4 3 7 7 C 1.47271 * 123.13936 * 179.97438 * 6 5 4 8 8 O 1.21636 * 119.99644 * 188.15057 * 7 6 5 9 9 N 1.34774 * 120.00307 * 8.15193 * 7 6 5 10 10 C 1.46933 * 120.62814 * 8.24776 * 9 7 6 11 11 C 1.53625 * 108.54110 * 126.36867 * 10 9 7 12 12 C 1.53039 * 109.24367 * 54.85597 * 11 10 9 13 13 C 1.53001 * 109.44765 * 178.49434 * 12 11 10 14 14 N 1.46497 * 109.47075 * 295.06128 * 13 12 11 15 15 C 1.36948 * 119.99488 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.38807 * 119.99382 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00750 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99622 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46940 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47321 * 119.99791 * 19 17 15 22 22 H 1.48510 * 109.46889 * 239.99877 * 19 17 15 23 23 C 1.53036 * 109.53711 * 298.50824 * 12 11 10 24 24 C 1.46917 * 120.63434 * 188.52407 * 9 7 6 25 25 C 1.35205 * 113.71717 * 359.97438 * 6 5 4 26 26 S 1.70769 * 124.71817 * 269.68958 * 4 3 2 27 27 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46873 * 300.00446 * 1 2 3 29 29 H 1.08993 * 109.46975 * 59.99682 * 1 2 3 30 30 H 1.09005 * 109.47381 * 59.99584 * 3 2 1 31 31 H 1.09000 * 109.47247 * 299.99936 * 3 2 1 32 32 H 1.08994 * 109.58591 * 246.20038 * 10 9 7 33 33 H 1.08997 * 109.58653 * 6.62604 * 10 9 7 34 34 H 1.09002 * 109.63206 * 294.86174 * 11 10 9 35 35 H 1.08997 * 109.42855 * 174.72283 * 11 10 9 36 36 H 1.09003 * 109.45987 * 58.52795 * 12 11 10 37 37 H 1.08996 * 109.46926 * 55.06446 * 13 12 11 38 38 H 1.09004 * 109.46617 * 175.05937 * 13 12 11 39 39 H 0.96999 * 120.00130 * 0.02562 * 14 13 12 40 40 H 0.96996 * 120.00387 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.50095 * 301.41603 * 23 12 11 42 42 H 1.08998 * 109.52630 * 181.33025 * 23 12 11 43 43 H 1.09003 * 109.58631 * 353.37568 * 24 9 7 44 44 H 1.09000 * 109.58827 * 113.65335 * 24 9 7 45 45 H 1.07998 * 125.58391 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2425 1.1286 -1.0583 6 6 5.5583 1.0299 -0.8510 7 6 6.5420 0.9525 -1.9442 8 8 7.7090 0.7153 -1.6965 9 7 6.1492 1.1444 -3.2191 10 6 4.7880 1.6075 -3.5214 11 6 4.8830 2.8560 -4.4115 12 6 5.7250 2.5313 -5.6475 13 6 5.7915 3.7606 -6.5559 14 7 4.4522 4.0638 -7.0661 15 6 4.2644 5.1292 -7.9058 16 1 5.1035 5.7461 -8.1915 17 6 2.9952 5.4168 -8.3889 18 7 1.9724 4.6653 -8.0404 19 14 2.7391 6.8696 -9.5349 20 1 4.0385 7.5486 -9.7713 21 1 2.1887 6.3893 -10.8277 22 1 1.7865 7.8262 -8.9161 23 6 7.1398 2.1400 -5.2146 24 6 7.0721 0.8888 -4.3333 25 6 5.9027 1.0077 0.4563 26 16 4.4833 1.1167 1.4026 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6888 1.8463 -0.8900 32 1 4.2429 0.8224 -4.0453 33 1 4.2724 1.8566 -2.5939 34 1 5.3516 3.6677 -3.8550 35 1 3.8825 3.1571 -4.7217 36 1 5.2692 1.7030 -6.1901 37 1 6.1653 4.6124 -5.9877 38 1 6.4618 3.5590 -7.3915 39 1 3.6984 3.5099 -6.8092 40 1 1.0856 4.8661 -8.3782 41 1 7.5872 2.9585 -4.6506 42 1 7.7460 1.9317 -6.0962 43 1 8.0641 0.6635 -3.9418 44 1 6.7109 0.0446 -4.9207 45 1 6.9096 0.9332 0.8397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206968406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = -10.915516 kcal Electronic energy + Delta-G solvation = -27162.528861 eV Core-core repulsion = 23307.898614 eV Total energy + Delta-G solvation = -3854.630247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.99499 -39.25310 -38.11026 -37.52264 -34.88010 -32.81950 -31.96690 -30.96504 -30.22776 -28.55819 -27.03847 -26.37288 -25.17635 -23.54640 -22.97697 -21.93613 -20.88322 -20.13284 -19.53061 -18.42852 -17.07922 -16.98681 -16.55172 -16.27845 -16.08864 -15.60866 -15.57411 -14.76611 -14.45769 -14.24296 -14.10910 -13.88896 -13.65790 -13.55957 -13.16913 -13.04772 -12.68248 -12.59803 -12.45200 -12.17936 -12.08697 -11.83683 -11.68870 -11.04679 -10.96852 -10.83949 -10.51002 -10.32933 -10.23848 -10.19920 -10.18758 -10.01156 -9.96052 -9.61233 -9.35455 -9.21854 -8.84054 -8.49667 -6.87626 -5.74187 -3.01886 0.14845 0.85182 1.25177 1.63011 2.99941 3.09829 3.37395 3.44337 3.50213 3.52303 3.86149 4.41440 4.61329 4.62807 4.81174 4.89091 4.98149 5.00520 5.06754 5.10102 5.13611 5.22770 5.32925 5.35189 5.44128 5.53112 5.60529 5.77900 5.78823 6.05947 6.07540 6.10374 6.27304 6.28768 6.41776 6.55933 6.61271 6.61642 6.74212 6.89657 6.99649 7.07530 7.44898 7.73326 8.08766 8.45290 9.56403 10.15506 10.50483 11.48918 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.002901 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.165419 B = 9651.126903 C =11623.836928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.015 3.985 5 N -0.414 5.414 6 C 0.015 3.985 7 C 0.592 3.408 8 O -0.545 6.545 9 N -0.587 5.587 10 C 0.079 3.921 11 C -0.123 4.123 12 C -0.095 4.095 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.124 4.124 24 C 0.112 3.888 25 C -0.223 4.223 26 S 0.236 5.764 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.134 0.866 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 -10.307 22.608 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.058 3.942 4 C -0.263 4.263 5 N -0.131 5.131 6 C -0.120 4.120 7 C 0.377 3.623 8 O -0.423 6.423 9 N -0.318 5.318 10 C -0.043 4.043 11 C -0.161 4.161 12 C -0.114 4.114 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.163 4.163 24 C -0.010 4.010 25 C -0.365 4.365 26 S 0.493 5.507 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.834 -10.418 23.161 25.462 hybrid contribution -0.044 0.822 -1.536 1.743 sum 1.790 -9.596 21.624 23.726 Atomic orbital electron populations 1.22826 0.79713 1.03392 1.00597 1.87941 1.20521 1.26131 1.95575 1.20814 0.84039 0.86280 1.03033 1.26841 1.01048 1.06251 0.92164 1.66947 1.03281 1.13348 1.29528 1.20456 0.89871 1.08069 0.93608 1.17078 0.86126 0.77281 0.81775 1.90784 1.17246 1.50931 1.83353 1.47961 1.14956 1.64142 1.04724 1.22927 0.81579 0.96408 1.03411 1.22011 1.01930 0.96599 0.95575 1.21331 0.94551 0.99332 0.96220 1.20668 0.89071 0.93309 0.93871 1.42392 1.03884 1.34728 1.56607 1.19292 0.93372 1.04387 1.19656 0.91246 1.24719 0.95719 0.99453 1.01222 1.69664 0.99148 1.40504 1.49009 0.86133 0.77537 0.82176 0.80468 1.20610 1.21910 1.21927 1.21891 0.97856 0.97303 0.99231 1.21694 0.94389 0.97795 0.87169 1.26668 1.06299 1.06725 0.96823 1.82791 0.94444 1.62661 1.10771 0.89110 0.93710 0.93170 0.90652 0.89383 0.91654 0.84947 0.92253 0.89578 0.91045 0.96513 0.96442 0.78251 0.93651 0.91608 0.90646 0.89255 0.91300 0.79129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.61 10.69 -35.23 -0.38 -3.99 16 3 C 0.14 1.12 6.51 36.01 0.23 1.35 16 4 C 0.02 0.15 6.97 -13.61 -0.09 0.06 16 5 N -0.41 -5.21 6.82 -8.51 -0.06 -5.27 16 6 C 0.01 0.20 6.46 -84.52 -0.55 -0.35 16 7 C 0.59 9.09 7.64 -12.59 -0.10 8.99 16 8 O -0.54 -9.38 16.17 5.25 0.08 -9.29 16 9 N -0.59 -8.66 2.97 -173.83 -0.52 -9.18 16 10 C 0.08 1.16 6.00 -3.48 -0.02 1.13 16 11 C -0.12 -2.01 5.26 -26.39 -0.14 -2.15 16 12 C -0.10 -1.60 2.19 -90.58 -0.20 -1.79 16 13 C 0.16 3.27 5.65 -4.04 -0.02 3.25 16 14 N -0.73 -18.72 5.32 -59.91 -0.32 -19.04 16 15 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 18 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 19 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 C -0.12 -1.76 5.36 -26.61 -0.14 -1.90 16 24 C 0.11 1.53 6.44 -3.71 -0.02 1.50 16 25 C -0.22 -2.30 10.62 29.65 0.31 -1.98 16 26 S 0.24 1.81 22.92 -107.50 -2.46 -0.66 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.13 1.91 4.12 -70.54 -0.29 1.62 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.58 7.15 -51.93 -0.37 1.21 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 10.19 6.84 -40.82 -0.28 9.91 16 40 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 1.23 7.00 -51.93 -0.36 0.86 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.19 1.71 8.04 -52.49 -0.42 1.29 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -34.20 379.55 -8.86 -43.07 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.77 Total: 6.58 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 0.13 Total: 2.02 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.17 Total: -61.01 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.29 Total: -13.28 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.46 Total: -0.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.20 -8.86 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206968406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.154 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds