Wall clock time and date at job start Sat Apr 11 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48496 * 109.47198 * 239.99678 * 3 2 1 5 5 H 1.48497 * 109.47532 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46896 * 120.00344 * 3 2 1 7 7 C 1.38797 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00306 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99936 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46877 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00313 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99759 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.63033 * 359.72119 * 13 11 10 15 15 C 1.53194 * 108.77334 * 233.88527 * 14 13 11 16 16 C 1.53038 * 109.31101 * 305.36035 * 15 14 13 17 17 C 1.53045 * 109.53516 * 61.36880 * 16 15 14 18 18 H 1.09001 * 109.49668 * 58.58262 * 17 16 15 19 19 N 1.46901 * 109.52288 * 178.66478 * 17 16 15 20 20 C 1.46897 * 111.00097 * 204.85651 * 19 17 16 21 21 C 1.52998 * 109.47266 * 180.02562 * 20 19 17 22 22 N 1.46504 * 109.47105 * 179.97438 * 21 20 19 23 23 C 1.34428 * 126.81959 * 124.99978 * 22 21 20 24 24 N 1.30837 * 108.07671 * 179.97438 * 23 22 21 25 25 C 1.33243 * 109.82488 * 0.02562 * 24 23 22 26 26 N 1.30706 * 108.95034 * 359.75234 * 25 24 23 27 27 C 1.46926 * 120.62918 * 180.02562 * 13 11 10 28 28 H 0.97005 * 119.99936 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47008 * 60.00129 * 10 9 7 30 30 H 1.09001 * 109.47371 * 300.00132 * 10 9 7 31 31 H 1.09004 * 109.58777 * 353.67036 * 14 13 11 32 32 H 1.08994 * 109.58607 * 114.09373 * 14 13 11 33 33 H 1.09005 * 109.49558 * 185.41228 * 15 14 13 34 34 H 1.08996 * 109.52408 * 65.33314 * 15 14 13 35 35 H 1.08994 * 109.46487 * 301.34997 * 16 15 14 36 36 H 1.09003 * 109.44983 * 181.38025 * 16 15 14 37 37 H 1.00902 * 110.99674 * 328.80902 * 19 17 16 38 38 H 1.09003 * 109.46841 * 300.00003 * 20 19 17 39 39 H 1.08999 * 109.47104 * 59.99754 * 20 19 17 40 40 H 1.08994 * 109.47270 * 299.99495 * 21 20 19 41 41 H 1.08999 * 109.47275 * 59.99840 * 21 20 19 42 42 H 1.07994 * 125.96410 * 359.92790 * 23 22 21 43 43 H 1.08006 * 125.52157 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.58178 * 245.90575 * 27 13 11 45 45 H 1.09004 * 109.58598 * 6.32579 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9872 -5.3027 -0.0017 12 8 0.7910 -5.5022 0.0000 13 7 2.8440 -6.3432 -0.0022 14 6 4.2958 -6.1174 -0.0093 15 6 4.9092 -6.8901 -1.1813 16 6 4.5025 -8.3623 -1.0851 17 6 2.9792 -8.4793 -1.1738 18 1 2.6353 -8.0475 -2.1138 19 7 2.5912 -9.8949 -1.1135 20 6 1.2906 -10.1124 -1.7609 21 6 0.9210 -11.5947 -1.6777 22 7 -0.3764 -11.8114 -2.3228 23 6 -0.6483 -12.6771 -3.3146 24 7 -1.9181 -12.5692 -3.6109 25 6 -2.4869 -11.6486 -2.8335 26 7 -1.5842 -11.1596 -2.0246 27 6 2.3439 -7.7247 -0.0024 28 1 -0.4850 0.8401 0.0004 29 1 3.1250 -3.7317 0.8875 30 1 3.1237 -3.7309 -0.8925 31 1 4.4995 -5.0530 -0.1268 32 1 4.7254 -6.4725 0.9273 33 1 5.9955 -6.8093 -1.1415 34 1 4.5476 -6.4734 -2.1214 35 1 4.8433 -8.7718 -0.1342 36 1 4.9579 -8.9189 -1.9042 37 1 3.3019 -10.4823 -1.5234 38 1 0.5290 -9.5193 -1.2545 39 1 1.3503 -9.8105 -2.8066 40 1 1.6824 -12.1880 -2.1838 41 1 0.8612 -11.8961 -0.6319 42 1 0.0582 -13.3447 -3.7852 43 1 -3.5263 -11.3566 -2.8642 44 1 2.6140 -8.2111 0.9349 45 1 1.2597 -7.7208 -0.1152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207430191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:57 Heat of formation + Delta-G solvation = 34.124259 kcal Electronic energy + Delta-G solvation = -26286.082026 eV Core-core repulsion = 22465.697601 eV Total energy + Delta-G solvation = -3820.384425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.99925 -41.27473 -39.07260 -37.15063 -35.05694 -34.60488 -33.30510 -32.21423 -31.93625 -30.48526 -28.28738 -27.68404 -26.26908 -24.70272 -23.20078 -22.90085 -22.30902 -21.85306 -20.37825 -19.51624 -18.38781 -18.15063 -17.43143 -16.97990 -16.89125 -16.73073 -16.34680 -16.06436 -15.76170 -15.69819 -15.37566 -15.25514 -14.96041 -14.73216 -14.51269 -14.31190 -13.98681 -13.81462 -13.48193 -13.32676 -13.22208 -13.17101 -12.87621 -12.67895 -12.63704 -12.14524 -11.96162 -11.93970 -11.74667 -11.51523 -11.14469 -11.03455 -10.93858 -10.84307 -10.66187 -10.29140 -9.86640 -9.54877 -8.71092 -8.35999 -6.15652 0.68514 1.22066 1.36776 1.43098 1.44264 1.51704 1.54164 1.98704 2.03842 2.25745 2.97911 2.98886 3.22506 3.50705 3.51649 3.59180 3.78223 3.85242 3.92420 3.99414 4.03298 4.13999 4.17124 4.21559 4.26088 4.31069 4.39578 4.52470 4.61111 4.65027 4.77010 4.82336 4.84055 4.96332 5.05092 5.10081 5.23568 5.31913 5.39350 5.42730 5.47034 5.79075 5.93617 6.17699 6.25280 6.41076 7.04512 7.09532 7.10007 8.73144 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.002198 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.828577 B =12735.939721 C =14363.225822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.158 6.158 10 C -0.120 4.120 11 C 0.529 3.471 12 O -0.571 6.571 13 N -0.607 5.607 14 C 0.094 3.906 15 C -0.129 4.129 16 C -0.110 4.110 17 C 0.085 3.915 18 H 0.027 0.973 19 N -0.667 5.667 20 C 0.055 3.945 21 C 0.135 3.865 22 N -0.384 5.384 23 C 0.263 3.737 24 N -0.580 5.580 25 C 0.189 3.811 26 N -0.360 5.360 27 C 0.124 3.876 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.365 0.635 38 H 0.048 0.952 39 H 0.029 0.971 40 H 0.150 0.850 41 H 0.099 0.901 42 H 0.268 0.732 43 H 0.232 0.768 44 H 0.086 0.914 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.187 -27.828 -5.277 32.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.069 5.931 10 C -0.271 4.271 11 C 0.317 3.683 12 O -0.450 6.450 13 N -0.341 5.341 14 C -0.027 4.027 15 C -0.167 4.167 16 C -0.148 4.148 17 C -0.025 4.025 18 H 0.045 0.955 19 N -0.302 5.302 20 C -0.075 4.075 21 C 0.014 3.986 22 N -0.175 5.175 23 C -0.033 4.033 24 N -0.308 5.308 25 C -0.114 4.114 26 N -0.188 5.188 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.187 0.813 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.168 0.832 41 H 0.118 0.882 42 H 0.283 0.717 43 H 0.248 0.752 44 H 0.104 0.896 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.796 -27.628 -4.305 30.750 hybrid contribution 1.179 1.592 -0.880 2.168 sum 13.975 -26.036 -5.185 30.001 Atomic orbital electron populations 1.70193 1.08086 1.28707 1.47914 1.26184 0.95989 1.03471 0.93681 0.84972 0.77773 0.75441 0.79612 1.18496 1.20471 1.18472 1.23152 0.95347 0.91709 1.59039 0.89702 1.85678 1.10843 0.99540 1.97045 1.23345 1.03281 0.94063 1.06407 1.20237 0.85990 0.86898 0.75183 1.90682 1.17558 1.85851 1.50886 1.48106 1.07743 1.05126 1.73123 1.22152 0.77349 1.02323 1.00914 1.21915 1.02529 0.94991 0.97309 1.21685 0.91567 0.96809 1.04728 1.21686 0.97161 0.88062 0.95640 0.95458 1.60093 1.04044 1.05798 1.60225 1.22032 0.92541 0.96226 0.96730 1.21932 0.79265 0.96801 1.00585 1.50659 1.08755 1.29499 1.28573 1.27030 0.94529 0.93463 0.88258 1.70552 1.07641 1.22927 1.29713 1.26478 1.01557 0.92659 0.90698 1.78091 0.92404 1.22245 1.26041 1.21501 0.98533 0.80045 0.99855 0.91991 0.87245 0.87399 0.89400 0.88734 0.87030 0.92748 0.89098 0.89072 0.81329 0.93364 0.95270 0.83181 0.88246 0.71686 0.75191 0.89592 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.01 13.22 21.65 0.29 -56.73 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.54 -31.45 9.50 67.95 0.65 -30.80 16 8 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 9 S -0.16 -9.07 20.57 -56.49 -1.16 -10.24 16 10 C -0.12 -4.95 4.50 71.24 0.32 -4.63 16 11 C 0.53 21.19 7.72 87.66 0.68 21.87 16 12 O -0.57 -28.76 15.27 -3.02 -0.05 -28.80 16 13 N -0.61 -17.06 2.97 -818.98 -2.43 -19.49 16 14 C 0.09 1.71 6.34 86.36 0.55 2.26 16 15 C -0.13 -1.59 6.08 30.67 0.19 -1.41 16 16 C -0.11 -1.09 5.17 30.62 0.16 -0.93 16 17 C 0.09 1.45 2.64 44.98 0.12 1.57 16 18 H 0.03 0.61 7.80 -2.39 -0.02 0.59 16 19 N -0.67 -7.95 6.31 -491.24 -3.10 -11.05 16 20 C 0.06 0.87 5.70 86.30 0.49 1.36 16 21 C 0.14 1.28 6.81 86.38 0.59 1.87 16 22 N -0.38 -6.26 3.69 -352.07 -1.30 -7.56 16 23 C 0.26 3.39 12.63 180.36 2.28 5.67 16 24 N -0.58 -11.68 11.19 -204.00 -2.28 -13.96 16 25 C 0.19 4.11 13.03 180.77 2.36 6.46 16 26 N -0.36 -8.87 12.57 -61.24 -0.77 -9.64 16 27 C 0.12 3.13 5.90 86.35 0.51 3.64 16 28 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 29 H 0.11 4.05 7.95 -2.40 -0.02 4.03 16 30 H 0.11 4.00 7.69 -2.39 -0.02 3.99 16 31 H 0.09 1.67 5.93 -2.38 -0.01 1.66 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.50 8.10 -2.39 -0.02 0.48 16 37 H 0.37 1.77 8.34 -89.69 -0.75 1.02 16 38 H 0.05 1.22 7.56 -2.39 -0.02 1.20 16 39 H 0.03 0.51 8.06 -2.39 -0.02 0.49 16 40 H 0.15 -0.09 8.09 -2.39 -0.02 -0.11 16 41 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.27 0.19 8.06 -2.91 -0.02 0.17 16 43 H 0.23 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.05 1.69 6.47 -2.38 -0.02 1.68 16 Total: -1.00 -90.91 385.25 0.82 -90.10 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.25 Total: 13.53 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 9.34 Total: 8.05 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -9.60 Total: -118.43 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.16 Total: -10.24 kcal Total: -90.91 0.82 -90.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207430191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.220 kcal (2) G-P(sol) polarization free energy of solvation -90.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds