Wall clock time and date at job start Sat Apr 11 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86795 * 120.00336 * 2 1 4 4 H 1.48500 * 109.47143 * 239.99607 * 3 2 1 5 5 H 1.48495 * 109.47239 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47019 * 119.99771 * 3 2 1 7 7 C 1.38953 * 119.99357 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99672 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00395 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00073 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00104 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99657 * 180.02562 * 10 9 7 13 13 N 1.46907 * 109.46798 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99622 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.49648 * 324.92844 * 14 13 12 16 16 C 1.53046 * 109.49413 * 204.83371 * 14 13 12 17 17 C 1.53035 * 109.53671 * 178.68066 * 16 14 13 18 18 C 1.53191 * 109.31536 * 61.36907 * 17 16 14 19 19 N 1.46932 * 108.77144 * 305.36521 * 18 17 16 20 20 C 1.34774 * 120.62464 * 233.58558 * 19 18 17 21 21 O 1.21589 * 119.99431 * 173.05152 * 20 19 18 22 22 C 1.47612 * 120.00670 * 353.04611 * 20 19 18 23 23 N 1.31878 * 126.45617 * 353.96766 * 22 20 19 24 24 N 1.28469 * 110.15512 * 179.97438 * 23 22 20 25 25 H 0.96991 * 124.93130 * 180.02562 * 24 23 22 26 26 C 1.35727 * 110.13305 * 359.97438 * 24 23 22 27 27 C 1.35542 * 107.11880 * 359.73332 * 26 24 23 28 28 F 1.35102 * 127.24726 * 180.29176 * 27 26 24 29 29 C 1.46924 * 118.74116 * 53.60389 * 19 18 17 30 30 H 0.96999 * 119.99755 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99499 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47496 * 59.99430 * 12 10 9 33 33 H 1.09002 * 109.47242 * 299.99171 * 12 10 9 34 34 H 1.00904 * 110.99401 * 303.94422 * 13 12 10 35 35 H 1.09002 * 109.45876 * 298.70855 * 16 14 13 36 36 H 1.09004 * 109.45699 * 58.65792 * 16 14 13 37 37 H 1.08997 * 109.50205 * 301.41449 * 17 16 14 38 38 H 1.09009 * 109.49496 * 181.31522 * 17 16 14 39 39 H 1.08991 * 109.59221 * 185.57337 * 18 17 16 40 40 H 1.09006 * 109.58534 * 65.14645 * 18 17 16 41 41 H 1.07998 * 126.44521 * 180.02562 * 26 24 23 42 42 H 1.08995 * 109.58717 * 186.60477 * 29 19 18 43 43 H 1.09007 * 109.70175 * 66.24841 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1021 1.6962 -1.2124 5 1 1.2834 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0887 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0016 10 6 1.9971 -3.5580 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2434 -4.8630 -0.0034 13 7 2.1980 -5.9796 -0.0036 14 6 1.4975 -7.2709 -0.0059 15 1 0.5843 -7.1904 0.5835 16 6 2.4042 -8.3449 0.5997 17 6 1.6634 -9.6836 0.6280 18 6 1.3123 -10.0988 -0.8042 19 7 0.5631 -9.0079 -1.4425 20 6 -0.6346 -9.2407 -2.0150 21 8 -1.3020 -8.3118 -2.4274 22 6 -1.1360 -10.6233 -2.1415 23 7 -0.4774 -11.7261 -1.8431 24 7 -1.2109 -12.7556 -2.0726 25 1 -0.9384 -13.6751 -1.9276 26 6 -2.4228 -12.3695 -2.5462 27 6 -2.4175 -11.0151 -2.5991 28 9 -3.4223 -10.2087 -3.0057 29 6 1.1446 -7.6586 -1.4453 30 1 -0.4850 0.8401 -0.0004 31 1 0.3532 -2.3906 -0.0024 32 1 0.6177 -4.9201 -0.8940 33 1 0.6158 -4.9213 0.8859 34 1 2.8333 -5.9119 -0.7846 35 1 3.3063 -8.4415 -0.0045 36 1 2.6769 -8.0591 1.6157 37 1 0.7486 -9.5810 1.2116 38 1 2.3012 -10.4429 1.0808 39 1 0.6995 -10.9999 -0.7837 40 1 2.2279 -10.2898 -1.3641 41 1 -3.2397 -13.0191 -2.8239 42 1 0.4211 -6.9497 -1.8477 43 1 2.0461 -7.6482 -2.0580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209504530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:04 Heat of formation + Delta-G solvation = -50.400357 kcal Electronic energy + Delta-G solvation = -28991.884123 eV Core-core repulsion = 24601.621260 eV Total energy + Delta-G solvation = -4390.262863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.73677 -43.80213 -41.20378 -40.17051 -38.80428 -36.44728 -35.79778 -33.62799 -33.25564 -32.91940 -31.75122 -30.86939 -27.99263 -27.09987 -25.84655 -24.49829 -23.48509 -22.91824 -21.80907 -21.13461 -20.59067 -19.91896 -19.45982 -18.32873 -17.81587 -17.52649 -17.28471 -16.97472 -16.84779 -16.42171 -16.16303 -16.11558 -15.95993 -15.59225 -15.44896 -15.35434 -15.16590 -14.83157 -14.36974 -14.20097 -14.03019 -13.88284 -13.52277 -13.32176 -13.18210 -12.85037 -12.52217 -12.44213 -12.33722 -12.12928 -11.92132 -11.64516 -11.57772 -11.51426 -11.14498 -10.66620 -10.38224 -10.10304 -10.04225 -9.93534 -9.29299 -8.47419 -5.97136 0.19848 0.77747 1.39456 1.40765 1.52619 1.56041 1.90647 2.01887 2.04667 2.28334 2.84529 2.91613 3.18989 3.44107 3.51488 3.62338 3.76164 3.82086 3.93277 4.08732 4.11380 4.24784 4.28834 4.33645 4.42032 4.50356 4.56111 4.68390 4.71780 4.89345 4.95433 5.06173 5.16622 5.28309 5.35885 5.39592 5.45377 5.84980 5.90119 6.04552 6.21278 6.32627 6.57116 6.57899 6.93614 7.09935 7.52988 8.07336 8.69941 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.002189 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.370815 B =12787.265789 C =14003.951410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.082 0.918 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.619 6.619 12 C 0.062 3.938 13 N -0.662 5.662 14 C 0.082 3.918 15 H 0.073 0.927 16 C -0.104 4.104 17 C -0.124 4.124 18 C 0.083 3.917 19 N -0.589 5.589 20 C 0.587 3.413 21 O -0.575 6.575 22 C -0.053 4.053 23 N -0.227 5.227 24 N -0.342 5.342 25 H 0.479 0.521 26 C 0.014 3.986 27 C -0.012 4.012 28 F -0.123 7.123 29 C 0.085 3.915 30 H 0.278 0.722 31 H 0.395 0.605 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.348 0.652 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.248 0.752 42 H 0.066 0.934 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -34.878 -2.759 35.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.216 4.216 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.100 0.900 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.070 4.070 13 N -0.293 5.293 14 C -0.029 4.029 15 H 0.091 0.909 16 C -0.142 4.142 17 C -0.162 4.162 18 C -0.039 4.039 19 N -0.321 5.321 20 C 0.374 3.626 21 O -0.453 6.453 22 C -0.212 4.212 23 N -0.065 5.065 24 N -0.061 5.061 25 H 0.331 0.669 26 C -0.133 4.133 27 C -0.042 4.042 28 F -0.102 7.102 29 C -0.040 4.040 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.167 0.833 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.152 0.848 40 H 0.101 0.899 41 H 0.264 0.736 42 H 0.085 0.915 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.127 -34.527 -1.902 34.721 hybrid contribution -1.438 1.470 -1.331 2.450 sum -4.565 -33.058 -3.233 33.527 Atomic orbital electron populations 1.69689 1.06991 1.29442 1.50162 1.26133 0.96581 1.02667 0.96170 0.84932 0.77698 0.76298 0.79061 1.19565 1.19508 1.19486 1.19670 0.92791 0.83901 1.50088 0.90024 1.41955 1.09329 1.04834 1.64906 1.20713 0.88220 0.85946 0.82387 1.90479 1.15527 1.87900 1.56691 1.21584 0.94182 0.88668 1.02601 1.60335 1.18065 0.99966 1.50966 1.21994 0.97446 0.89188 0.94224 0.90909 1.21500 0.97946 0.92956 1.01772 1.21911 1.01027 0.97229 0.96072 1.22757 0.97945 0.90141 0.93013 1.47950 1.18404 1.10520 1.55186 1.17369 0.81025 0.86358 0.77817 1.90833 1.57836 1.44920 1.51721 1.21829 0.94738 0.93063 1.11604 1.73383 1.21197 0.93115 1.18818 1.43411 1.08929 1.09737 1.43989 0.66863 1.23300 0.93008 0.93345 1.03606 1.17714 0.86778 0.89736 1.09968 1.91489 1.57310 1.72664 1.88711 1.22450 0.98825 0.83772 0.98927 0.91262 0.77122 0.92449 0.88130 0.83296 0.90928 0.91089 0.92199 0.87360 0.84789 0.89931 0.73569 0.91546 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.97 13.05 21.66 0.28 -51.68 16 2 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 3 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.34 -19.75 9.68 84.04 0.81 -18.93 16 8 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 9 N -0.57 -31.11 5.29 -306.99 -1.62 -32.74 16 10 C 0.44 22.12 7.82 87.66 0.69 22.81 16 11 O -0.62 -35.37 15.78 -3.07 -0.05 -35.42 16 12 C 0.06 2.37 5.97 85.56 0.51 2.88 16 13 N -0.66 -22.08 5.88 -495.16 -2.91 -24.99 16 14 C 0.08 2.16 2.62 44.99 0.12 2.27 16 15 H 0.07 2.04 7.80 -2.39 -0.02 2.02 16 16 C -0.10 -2.08 5.49 30.62 0.17 -1.91 16 17 C -0.12 -1.81 6.08 30.67 0.19 -1.62 16 18 C 0.08 1.30 6.12 86.36 0.53 1.83 16 19 N -0.59 -14.08 2.97 -822.57 -2.44 -16.52 16 20 C 0.59 16.97 7.68 86.72 0.67 17.64 16 21 O -0.58 -21.97 16.11 -4.00 -0.06 -22.04 16 22 C -0.05 -1.14 6.83 42.44 0.29 -0.85 16 23 N -0.23 -2.83 8.68 -48.15 -0.42 -3.24 16 24 N -0.34 -1.16 6.86 -56.99 -0.39 -1.55 16 25 H 0.48 -3.12 8.96 -220.00 -1.97 -5.09 16 26 C 0.01 0.08 12.06 83.47 1.01 1.09 16 27 C -0.01 -0.23 8.03 22.48 0.18 -0.05 16 28 F -0.12 -3.18 17.05 44.97 0.77 -2.41 16 29 C 0.08 2.25 5.70 86.36 0.49 2.75 16 30 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.40 20.67 7.90 -92.71 -0.73 19.94 16 32 H 0.06 2.08 7.56 -2.39 -0.02 2.06 16 33 H 0.10 3.56 8.06 -2.39 -0.02 3.54 16 34 H 0.35 11.88 8.11 -89.69 -0.73 11.16 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.14 1.81 4.15 -30.27 -0.13 1.68 16 40 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.25 -1.09 8.06 -2.91 -0.02 -1.11 16 42 H 0.07 2.15 6.47 -2.39 -0.02 2.13 16 43 H 0.08 2.00 8.04 -2.38 -0.02 1.98 16 Total: -1.00 -85.30 363.40 -1.15 -86.45 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -2.44 Total: 30.35 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 6.11 Total: 27.47 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -7.50 Total: -130.73 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -0.11 Total: -57.46 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.77 Total: -2.41 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -85.30 -1.15 -86.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209504530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.050 kcal (2) G-P(sol) polarization free energy of solvation -85.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds