Wall clock time and date at job start Sat Apr 11 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86805 * 119.99805 * 2 1 4 4 H 1.48496 * 109.46866 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46853 * 299.99886 * 3 2 1 6 6 H 1.48495 * 109.47099 * 60.00267 * 3 2 1 7 7 C 1.38941 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00141 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99824 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99889 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99951 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00058 * 183.51168 * 13 12 10 15 15 H 1.09000 * 109.47072 * 176.52800 * 14 13 12 16 16 C 1.52997 * 109.47082 * 296.53352 * 14 13 12 17 17 N 1.46504 * 109.47085 * 304.99780 * 16 14 13 18 18 C 1.34769 * 120.00247 * 179.72655 * 17 16 14 19 19 O 1.21584 * 119.99486 * 0.02562 * 18 17 16 20 20 C 1.47619 * 120.00357 * 179.97438 * 18 17 16 21 21 N 1.31861 * 126.45602 * 359.68735 * 20 18 17 22 22 N 1.28474 * 110.15545 * 179.85470 * 21 20 18 23 23 H 0.97001 * 124.93270 * 180.16835 * 22 21 20 24 24 C 1.35728 * 110.12984 * 0.42157 * 22 21 20 25 25 C 1.35540 * 107.11640 * 359.74829 * 24 22 21 26 26 F 1.35104 * 127.24170 * 179.97438 * 25 24 22 27 27 C 1.53004 * 109.46609 * 56.53030 * 14 13 12 28 28 C 1.52999 * 117.49532 * 134.30954 * 27 14 13 29 29 C 1.53005 * 117.50028 * 65.65263 * 27 14 13 30 30 H 0.97000 * 119.99940 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00310 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47165 * 60.00344 * 12 10 9 33 33 H 1.09005 * 109.47078 * 300.00417 * 12 10 9 34 34 H 1.00907 * 110.99846 * 307.46232 * 13 12 10 35 35 H 1.09000 * 109.46976 * 184.99777 * 16 14 13 36 36 H 1.09003 * 109.46836 * 64.99680 * 16 14 13 37 37 H 0.97006 * 119.99502 * 359.97438 * 17 16 14 38 38 H 1.08001 * 126.44151 * 179.71054 * 24 22 21 39 39 H 1.08994 * 115.55246 * 279.97531 * 27 14 13 40 40 H 1.08999 * 117.50164 * 359.97438 * 28 27 14 41 41 H 1.09004 * 117.50074 * 145.01826 * 28 27 14 42 42 H 1.08998 * 117.49478 * 214.97849 * 29 27 14 43 43 H 1.09002 * 117.49649 * 359.97438 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 7 2.1983 -5.9794 -0.0017 14 6 1.4999 -7.2692 -0.0852 15 1 2.2313 -8.0751 -0.1461 16 6 0.6323 -7.4608 1.1603 17 7 1.4622 -7.3225 2.3596 18 6 0.9071 -7.4474 3.5813 19 8 -0.2824 -7.6754 3.6881 20 6 1.7435 -7.3086 4.7898 21 7 3.0398 -7.0695 4.8223 22 7 3.4480 -7.0068 6.0388 23 1 4.3642 -6.8380 6.3093 24 6 2.4122 -7.2165 6.8905 25 6 1.3060 -7.4133 6.1324 26 9 0.0503 -7.6582 6.5665 27 6 0.6137 -7.2893 -1.3322 28 6 0.6569 -8.5422 -2.2094 29 6 1.3094 -7.2452 -2.6943 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6161 -4.9205 -0.8903 33 1 0.6180 -4.9208 0.8897 34 1 2.8683 -5.8819 -0.7500 35 1 0.1838 -8.4541 1.1413 36 1 -0.1549 -6.7069 1.1742 37 1 2.4106 -7.1374 2.2744 38 1 2.4606 -7.2256 7.9694 39 1 -0.3419 -6.7735 -1.2383 40 1 1.3169 -9.3519 -1.8983 41 1 -0.2702 -8.8504 -2.6928 42 1 0.8113 -6.7006 -3.4963 43 1 2.3985 -7.2014 -2.7018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265370001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:35 Heat of formation + Delta-G solvation = -39.338497 kcal Electronic energy + Delta-G solvation = -29096.787023 eV Core-core repulsion = 24707.003838 eV Total energy + Delta-G solvation = -4389.783185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.70837 -43.69817 -40.85538 -40.13808 -39.15951 -36.29186 -35.93492 -34.69253 -33.26222 -32.95676 -31.61645 -30.28889 -28.12797 -26.26577 -25.38043 -23.58556 -23.15089 -22.75343 -21.73824 -21.20813 -20.50056 -19.96063 -19.74686 -18.42588 -18.19862 -17.47522 -17.11807 -16.96158 -16.92986 -16.40350 -16.28796 -16.08782 -16.00841 -15.90490 -15.51589 -15.33478 -15.22694 -14.93912 -14.53570 -14.06784 -13.58405 -13.55703 -13.44135 -13.20480 -12.97550 -12.83575 -12.41095 -12.39065 -12.14633 -12.12504 -12.03785 -11.51573 -11.45163 -11.19365 -11.05134 -10.70992 -10.34586 -10.12047 -10.01806 -9.97802 -9.37584 -8.46824 -5.95836 0.30937 0.80725 1.35943 1.40778 1.55304 1.72247 2.04776 2.07536 2.19518 2.28646 2.78597 3.04655 3.08693 3.20662 3.47746 3.54280 3.63589 3.84193 3.90292 4.01496 4.11727 4.15696 4.30596 4.31782 4.40722 4.43911 4.53694 4.56903 4.75571 4.82604 4.94625 5.05883 5.19559 5.24981 5.28668 5.36587 5.40553 5.85160 5.92586 6.06663 6.37319 6.41658 6.58752 6.66164 7.11058 7.11962 7.55625 8.09962 8.70982 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007606 B = 0.003452 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3680.500134 B = 8109.115981 C =10671.754299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.081 0.919 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.618 6.618 12 C 0.067 3.933 13 N -0.661 5.661 14 C 0.118 3.882 15 H 0.111 0.889 16 C 0.130 3.870 17 N -0.689 5.689 18 C 0.592 3.408 19 O -0.572 6.572 20 C -0.059 4.059 21 N -0.238 5.238 22 N -0.345 5.345 23 H 0.477 0.523 24 C 0.006 3.994 25 C -0.010 4.010 26 F -0.119 7.119 27 C -0.200 4.200 28 C -0.152 4.152 29 C -0.180 4.180 30 H 0.277 0.723 31 H 0.394 0.606 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.352 0.648 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.419 0.581 38 H 0.250 0.750 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -18.915 7.844 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.099 0.901 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.504 6.504 12 C -0.065 4.065 13 N -0.293 5.293 14 C 0.007 3.993 15 H 0.129 0.871 16 C 0.006 3.994 17 N -0.340 5.340 18 C 0.376 3.624 19 O -0.450 6.450 20 C -0.219 4.219 21 N -0.076 5.076 22 N -0.065 5.065 23 H 0.328 0.672 24 C -0.140 4.140 25 C -0.040 4.040 26 F -0.098 7.098 27 C -0.220 4.220 28 C -0.190 4.190 29 C -0.217 4.217 30 H 0.086 0.914 31 H 0.227 0.773 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.256 0.744 38 H 0.266 0.734 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.418 -18.761 7.878 21.057 hybrid contribution -0.864 1.160 -0.300 1.477 sum 4.554 -17.601 7.578 19.697 Atomic orbital electron populations 1.69695 1.06955 1.29187 1.50521 1.26064 0.96503 1.02505 0.96318 0.84864 0.78119 0.77047 0.78271 1.19537 1.19564 1.19784 1.19717 0.92721 0.83953 1.49732 0.90102 1.41957 1.09228 1.04888 1.65138 1.20815 0.88270 0.86045 0.82072 1.90481 1.15476 1.87919 1.56572 1.21460 0.94474 0.88391 1.02180 1.60307 1.15945 0.99868 1.53133 1.21450 0.94699 0.92124 0.90978 0.87079 1.21462 0.93076 1.02142 0.82705 1.45624 1.14064 1.70106 1.04182 1.17061 0.85832 0.76814 0.82657 1.90796 1.15942 1.51315 1.86958 1.22072 0.91849 1.13453 0.94564 1.73647 1.11255 1.17317 1.05409 1.43252 1.12595 1.49012 1.01609 0.67194 1.23338 0.85190 1.05327 1.00134 1.17646 0.82217 1.12836 0.91325 1.91478 1.36494 1.92626 1.89157 1.22919 1.01831 1.05022 0.92250 1.23044 1.03173 0.90945 1.01819 1.22950 1.00317 1.02169 0.96287 0.91378 0.77304 0.91446 0.89656 0.82763 0.89632 0.92668 0.74369 0.73440 0.88059 0.87293 0.87924 0.88924 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.89 13.05 21.66 0.28 -50.60 16 2 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 3 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.89 16 9 N -0.58 -30.13 5.29 -306.98 -1.62 -31.75 16 10 C 0.44 21.04 7.81 87.66 0.68 21.72 16 11 O -0.62 -33.55 15.70 -3.08 -0.05 -33.60 16 12 C 0.07 2.35 5.50 85.56 0.47 2.82 16 13 N -0.66 -19.20 5.55 -495.56 -2.75 -21.96 16 14 C 0.12 2.54 2.81 44.91 0.13 2.66 16 15 H 0.11 1.99 7.95 -2.39 -0.02 1.98 16 16 C 0.13 3.23 4.76 86.38 0.41 3.64 16 17 N -0.69 -19.07 5.38 -466.19 -2.51 -21.58 16 18 C 0.59 19.19 7.82 86.72 0.68 19.87 16 19 O -0.57 -22.20 16.67 -3.98 -0.07 -22.26 16 20 C -0.06 -1.66 7.13 42.45 0.30 -1.36 16 21 N -0.24 -5.38 11.91 -48.16 -0.57 -5.96 16 22 N -0.35 -4.40 6.86 -56.99 -0.39 -4.80 16 23 H 0.48 1.67 8.96 -219.99 -1.97 -0.30 16 24 C 0.01 0.08 12.06 83.47 1.01 1.08 16 25 C -0.01 -0.26 8.03 22.47 0.18 -0.08 16 26 F -0.12 -3.46 17.03 44.97 0.77 -2.69 16 27 C -0.20 -3.94 3.80 -10.79 -0.04 -3.98 16 28 C -0.15 -2.34 10.18 30.62 0.31 -2.03 16 29 C -0.18 -3.39 10.04 30.62 0.31 -3.08 16 30 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.39 20.00 7.90 -92.71 -0.73 19.27 16 32 H 0.07 2.14 6.58 -2.39 -0.02 2.12 16 33 H 0.09 3.02 6.68 -2.38 -0.02 3.01 16 34 H 0.35 10.69 8.18 -89.69 -0.73 9.96 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.57 6.82 -2.39 -0.02 1.55 16 37 H 0.42 11.23 7.86 -92.70 -0.73 10.51 16 38 H 0.25 0.44 8.06 -2.91 -0.02 0.42 16 39 H 0.10 2.17 7.70 -2.39 -0.02 2.15 16 40 H 0.11 1.39 8.08 -2.39 -0.02 1.37 16 41 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -80.00 376.26 -2.21 -82.21 By element: Atomic # 1 Polarization: 47.94 SS G_CDS: -3.04 Total: 44.90 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 5.72 Total: 22.74 kcal Atomic # 7 Polarization: -129.08 SS G_CDS: -7.57 Total: -136.65 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.11 Total: -55.86 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.77 Total: -2.69 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -80.00 -2.21 -82.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265370001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.872 kcal (2) G-P(sol) polarization free energy of solvation -79.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds