Wall clock time and date at job start Sat Apr 11 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99730 * 2 1 4 4 C 1.50705 * 109.46922 * 180.02562 * 3 2 1 5 5 N 1.28645 * 124.72561 * 89.99802 * 4 3 2 6 6 C 1.33556 * 115.76763 * 180.02562 * 5 4 3 7 7 C 1.47269 * 123.13724 * 179.97438 * 6 5 4 8 8 O 1.21638 * 119.99367 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00554 * 0.02562 * 7 6 5 10 10 C 1.46495 * 120.00197 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46804 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46631 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.46753 * 179.97438 * 12 11 10 14 14 C 1.36942 * 120.00163 * 270.27569 * 13 12 11 15 15 H 1.07996 * 119.99874 * 140.37622 * 14 13 12 16 16 C 1.38808 * 119.99665 * 320.37846 * 14 13 12 17 17 N 1.31618 * 120.00313 * 340.40823 * 16 14 13 18 18 Si 1.86809 * 120.00009 * 160.41496 * 16 14 13 19 19 H 1.48503 * 109.46690 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47125 * 119.99359 * 18 16 14 21 21 H 1.48497 * 109.47037 * 239.99887 * 18 16 14 22 22 C 1.46496 * 119.99916 * 90.00415 * 13 12 11 23 23 C 1.52998 * 117.49961 * 183.28856 * 22 13 12 24 24 C 1.52996 * 60.00033 * 252.50937 * 23 22 13 25 25 C 1.35204 * 113.71907 * 0.24223 * 6 5 4 26 26 S 1.70774 * 124.71499 * 269.99753 * 4 3 2 27 27 H 1.08997 * 109.46909 * 299.99781 * 1 2 3 28 28 H 1.08998 * 109.47135 * 60.00301 * 1 2 3 29 29 H 1.08996 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47187 * 60.00020 * 3 2 1 31 31 H 1.09001 * 109.47380 * 299.99918 * 3 2 1 32 32 H 0.97002 * 119.99473 * 359.97438 * 9 7 6 33 33 H 1.08993 * 109.47443 * 60.00152 * 10 9 7 34 34 H 1.09002 * 109.46683 * 299.99562 * 10 9 7 35 35 H 1.09000 * 109.47245 * 60.00179 * 11 10 9 36 36 H 1.08993 * 109.46942 * 299.99372 * 11 10 9 37 37 H 1.09000 * 109.46804 * 60.00344 * 12 11 10 38 38 H 1.08993 * 109.47300 * 299.99589 * 12 11 10 39 39 H 0.96999 * 120.00117 * 175.02377 * 17 16 14 40 40 H 1.09001 * 115.54873 * 328.99031 * 22 13 12 41 41 H 1.09000 * 117.49746 * 359.97438 * 23 22 13 42 42 H 1.09008 * 117.50167 * 145.01934 * 23 22 13 43 43 H 1.09005 * 117.49247 * 252.51021 * 24 23 22 44 44 H 1.08993 * 117.52104 * 107.48262 * 24 23 22 45 45 H 1.07999 * 125.58642 * 179.75433 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2427 1.1288 -1.0583 6 6 5.5579 1.0241 -0.8509 7 6 6.5415 0.9457 -1.9441 8 8 7.7272 0.8508 -1.6895 9 7 6.1281 0.9790 -3.2264 10 6 7.1066 0.9004 -4.3138 11 6 6.3799 0.9583 -5.6590 12 6 7.4019 0.8769 -6.7946 13 7 6.7060 0.9317 -8.0827 14 6 6.2820 -0.2244 -8.6816 15 1 5.3259 -0.2536 -9.1830 16 6 7.0810 -1.3589 -8.6442 17 7 8.3685 -1.2491 -8.3936 18 14 6.3291 -3.0414 -8.9497 19 1 4.8738 -2.8941 -9.2058 20 1 6.9789 -3.6672 -10.1292 21 1 6.5368 -3.9005 -7.7563 22 6 6.4585 2.2239 -8.7270 23 6 5.6599 2.2210 -10.0321 24 6 7.1646 2.4970 -10.0566 25 6 5.9014 0.9910 0.4564 26 16 4.4827 1.1095 1.4027 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 5.1826 1.0543 -3.4292 33 1 7.6582 -0.0367 -4.2393 34 1 7.8007 1.7376 -4.2390 35 1 5.8280 1.8953 -5.7338 36 1 5.6861 0.1210 -5.7334 37 1 7.9541 -0.0599 -6.7200 38 1 8.0954 1.7144 -6.7201 39 1 8.9132 -2.0457 -8.2959 40 1 6.3152 3.0666 -8.0508 41 1 5.3191 1.2577 -10.4114 42 1 4.9909 3.0620 -10.2146 43 1 7.4854 3.5197 -10.2552 44 1 7.8136 1.7156 -10.4516 45 1 6.9074 0.9061 0.8399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266176159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:43 Heat of formation + Delta-G solvation = 9.619450 kcal Electronic energy + Delta-G solvation = -26169.212925 eV Core-core repulsion = 22315.473141 eV Total energy + Delta-G solvation = -3853.739784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63978 -38.88875 -38.03493 -37.08136 -35.26963 -33.51204 -32.00212 -31.49848 -29.44844 -28.54200 -26.58038 -25.95471 -24.60374 -23.16605 -21.53942 -21.36248 -20.93465 -20.01307 -19.63582 -18.76530 -17.04568 -16.77872 -16.33322 -16.24110 -16.05324 -15.64237 -15.43665 -15.15414 -14.70137 -14.46684 -14.33395 -13.85023 -13.69722 -13.31145 -13.11488 -12.67693 -12.60831 -12.30419 -12.11826 -11.91178 -11.87880 -11.48692 -10.99319 -10.79641 -10.71313 -10.64718 -10.30450 -10.25684 -10.14754 -10.12260 -9.99209 -9.90236 -9.60090 -9.53760 -9.31184 -9.22822 -8.79046 -8.46357 -6.51349 -5.76763 -3.44229 0.17177 0.86909 1.27286 1.70875 3.11519 3.33505 3.35685 3.43601 3.44533 3.46130 3.89081 4.41546 4.45305 4.70951 4.83963 4.90011 4.94331 4.97409 4.98421 5.04974 5.20569 5.27793 5.34800 5.55719 5.68116 5.79965 5.94902 6.04462 6.15648 6.30902 6.40031 6.42078 6.52912 6.55893 6.68080 6.71660 6.77741 7.07215 7.09993 7.14118 7.27270 7.64785 7.70008 7.81223 8.27938 8.51387 9.16889 9.77840 10.36514 11.17776 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.002372 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.624468 B =11800.132321 C =12236.710176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.141 3.859 4 C 0.015 3.985 5 N -0.422 5.422 6 C 0.014 3.986 7 C 0.588 3.412 8 O -0.538 6.538 9 N -0.704 5.704 10 C 0.120 3.880 11 C -0.146 4.146 12 C 0.155 3.845 13 N -0.552 5.552 14 C -0.260 4.260 15 H 0.063 0.937 16 C 0.015 3.985 17 N -0.882 5.882 18 Si 0.894 3.106 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.287 1.287 22 C 0.121 3.879 23 C -0.196 4.196 24 C -0.221 4.221 25 C -0.222 4.222 26 S 0.231 5.769 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.408 0.592 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.029 0.971 39 H 0.254 0.746 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 7.237 21.161 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.061 3.939 4 C -0.264 4.264 5 N -0.139 5.139 6 C -0.122 4.122 7 C 0.370 3.630 8 O -0.416 6.416 9 N -0.354 5.354 10 C -0.003 4.003 11 C -0.186 4.186 12 C 0.028 3.972 13 N -0.268 5.268 14 C -0.389 4.389 15 H 0.081 0.919 16 C -0.186 4.186 17 N -0.523 5.523 18 Si 0.723 3.277 19 H -0.200 1.200 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.012 3.988 23 C -0.234 4.234 24 C -0.263 4.263 25 C -0.364 4.364 26 S 0.487 5.513 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.244 0.756 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -12.470 6.890 21.786 26.030 hybrid contribution -0.278 -0.752 -1.089 1.352 sum -12.748 6.138 20.697 25.071 Atomic orbital electron populations 1.22818 0.79821 1.03459 1.00382 1.87973 1.20428 1.26174 1.95528 1.20770 0.84213 0.86211 1.02675 1.26583 1.00749 1.07023 0.92060 1.66866 1.03222 1.12498 1.31350 1.20540 0.89878 1.07968 0.93795 1.17052 0.86543 0.77273 0.82116 1.90820 1.16093 1.50805 1.83884 1.46009 1.12018 1.72290 1.05088 1.21544 0.91217 1.02195 0.85393 1.22468 1.01117 1.01620 0.93427 1.20757 0.91770 1.02506 0.82150 1.43339 1.66102 1.00047 1.17330 1.19047 0.98992 0.88020 1.32875 0.91904 1.25246 0.94257 0.99320 0.99746 1.70061 1.03687 1.28210 1.50361 0.86383 0.79083 0.84645 0.77618 1.19995 1.21584 1.21331 1.21220 1.00842 0.90139 0.86592 1.23011 0.93862 1.01886 1.04659 1.23344 0.94689 1.00062 1.08155 1.26709 1.06260 1.06531 0.96905 1.82757 0.94678 1.62970 1.10867 0.93719 0.93399 0.89051 0.90739 0.89749 0.75622 0.91191 0.91640 0.93035 0.91422 0.88667 0.95239 0.93553 0.89720 0.88516 0.90900 0.91343 0.89003 0.79034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.53 10.69 -35.23 -0.38 -3.91 16 3 C 0.14 1.07 6.51 36.01 0.23 1.30 16 4 C 0.02 0.15 6.97 -13.61 -0.09 0.06 16 5 N -0.42 -5.46 10.12 -8.51 -0.09 -5.55 16 6 C 0.01 0.19 6.70 -84.53 -0.57 -0.38 16 7 C 0.59 9.68 7.80 -12.59 -0.10 9.58 16 8 O -0.54 -10.27 16.71 5.24 0.09 -10.18 16 9 N -0.70 -11.22 5.55 -61.43 -0.34 -11.56 16 10 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 11 C -0.15 -2.75 5.65 -26.73 -0.15 -2.90 16 12 C 0.15 3.50 5.33 -4.04 -0.02 3.48 16 13 N -0.55 -13.44 2.75 -165.67 -0.45 -13.90 16 14 C -0.26 -6.91 8.47 -15.06 -0.13 -7.04 16 15 H 0.06 1.69 6.75 -52.49 -0.35 1.33 16 16 C 0.02 0.42 4.98 -17.43 -0.09 0.33 16 17 N -0.88 -25.04 11.50 55.49 0.64 -24.40 16 18 Si 0.89 21.43 29.60 -169.99 -5.03 16.39 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.12 2.60 6.56 -67.93 -0.45 2.15 16 23 C -0.20 -3.91 9.80 -26.73 -0.26 -4.17 16 24 C -0.22 -4.60 10.36 -26.73 -0.28 -4.88 16 25 C -0.22 -2.43 10.62 29.65 0.31 -2.11 16 26 S 0.23 1.82 22.92 -107.50 -2.46 -0.64 16 27 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.41 6.01 7.99 -40.82 -0.33 5.68 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.10 2.45 5.59 -51.93 -0.29 2.16 16 38 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 39 H 0.25 6.99 8.32 -40.82 -0.34 6.65 16 40 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.10 2.11 6.46 -51.93 -0.34 1.77 16 42 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 45 H 0.19 1.87 8.03 -52.49 -0.42 1.45 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -32.30 394.66 -9.35 -41.65 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.78 Total: 7.37 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.49 Total: -1.23 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.24 Total: -55.41 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.29 Total: -14.09 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.46 Total: -0.64 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.30 -9.35 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266176159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.270 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds