Wall clock time and date at job start Sat Apr 11 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46507 * 114.34555 * 139.68292 * 15 14 13 17 17 C 1.34772 * 119.99768 * 111.07728 * 16 15 14 18 18 O 1.21605 * 120.00113 * 0.02562 * 17 16 15 19 19 C 1.47430 * 119.99825 * 180.02562 * 17 16 15 20 20 C 1.41284 * 126.41468 * 0.02835 * 19 17 16 21 21 N 1.30448 * 108.02713 * 179.97438 * 20 19 17 22 22 N 1.39937 * 108.89327 * 359.97438 * 21 20 19 23 23 C 1.46498 * 125.75530 * 180.02562 * 22 21 20 24 24 C 1.53003 * 109.47157 * 304.97730 * 23 22 21 25 25 F 1.39896 * 109.47091 * 179.97438 * 24 23 22 26 26 C 1.34260 * 108.49291 * 359.75351 * 22 21 20 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 35 35 H 0.97000 * 119.99701 * 291.08193 * 16 15 14 36 36 H 1.08004 * 125.99038 * 359.97438 * 20 19 17 37 37 H 1.09005 * 109.47125 * 64.97599 * 23 22 21 38 38 H 1.08999 * 109.47582 * 184.97903 * 23 22 21 39 39 H 1.08992 * 109.47149 * 300.00256 * 24 23 22 40 40 H 1.08999 * 109.46566 * 60.00181 * 24 23 22 41 41 H 1.08004 * 126.29714 * 180.24436 * 26 22 21 42 42 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 43 43 H 1.08997 * 113.47572 * 23.87318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 1.7178 -8.8246 -1.7306 17 6 2.4155 -9.7888 -2.3629 18 8 3.6176 -9.8752 -2.2007 19 6 1.7214 -10.7389 -3.2512 20 6 0.3379 -10.7628 -3.5366 21 7 0.1130 -11.7471 -4.3625 22 7 1.3241 -12.3903 -4.6415 23 6 1.4962 -13.5446 -5.5270 24 6 0.5683 -14.6751 -5.0775 25 9 0.7323 -15.7771 -5.9235 26 6 2.3026 -11.7674 -3.9654 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3617 -8.2554 -0.4780 35 1 0.7588 -8.7559 -1.8597 36 1 -0.4037 -10.0848 -3.1404 37 1 1.2507 -13.2579 -6.5496 38 1 2.5308 -13.8848 -5.4835 39 1 0.8138 -14.9617 -4.0550 40 1 -0.4663 -14.3348 -5.1211 41 1 3.3513 -12.0255 -3.9759 42 1 1.6894 -7.6711 1.2299 43 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267651721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:17 Heat of formation + Delta-G solvation = -29.152442 kcal Electronic energy + Delta-G solvation = -27515.756151 eV Core-core repulsion = 23126.414667 eV Total energy + Delta-G solvation = -4389.341484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.78581 -42.44998 -41.55563 -40.01709 -39.28840 -35.94812 -35.39510 -34.87273 -33.27103 -31.66554 -31.20953 -29.96455 -27.34052 -26.91164 -25.57564 -24.69135 -23.64053 -21.85672 -21.34662 -21.12563 -20.84726 -19.88749 -19.03456 -17.87579 -17.53670 -17.50256 -17.38328 -16.72295 -16.52641 -16.48549 -16.35102 -16.07215 -15.77953 -15.68596 -15.44976 -15.12968 -14.90242 -14.71702 -14.23276 -13.95577 -13.77746 -13.64248 -13.63811 -13.49143 -13.00260 -12.71667 -12.65038 -12.42264 -12.28831 -12.23495 -12.11522 -11.83101 -11.78506 -11.48815 -10.99595 -10.65815 -10.37112 -10.14343 -9.99325 -9.76479 -9.68209 -8.45738 -5.94039 0.46677 1.13314 1.20285 1.38223 1.41867 1.54526 2.08032 2.15338 2.31426 2.42652 2.92821 3.15282 3.20681 3.35752 3.57379 3.58368 3.73577 3.76861 3.82485 3.98134 4.05129 4.14566 4.17098 4.23690 4.31285 4.33421 4.44211 4.51259 4.55997 4.67982 4.76172 4.77851 4.83983 5.01765 5.35975 5.36782 5.41951 5.49251 5.74451 5.90530 6.09636 6.43665 6.62839 6.64184 7.15083 7.30640 7.58797 8.16249 8.71608 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029693 B = 0.001553 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.771454 B =18027.546869 C =18327.812220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.075 0.925 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.622 6.622 12 C 0.026 3.974 13 N -0.476 5.476 14 C -0.013 4.013 15 C 0.136 3.864 16 N -0.698 5.698 17 C 0.597 3.403 18 O -0.591 6.591 19 C -0.312 4.312 20 C 0.095 3.905 21 N -0.319 5.319 22 N -0.361 5.361 23 C 0.097 3.903 24 C 0.057 3.943 25 F -0.217 7.217 26 C 0.139 3.861 27 C 0.003 3.997 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.417 0.583 36 H 0.220 0.780 37 H 0.108 0.892 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.207 0.793 42 H 0.103 0.897 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.050 -29.547 -9.508 31.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.093 0.907 9 N -0.213 5.213 10 C 0.226 3.774 11 O -0.508 6.508 12 C -0.106 4.106 13 N -0.199 5.199 14 C -0.143 4.143 15 C 0.029 3.971 16 N -0.349 5.349 17 C 0.386 3.614 18 O -0.473 6.473 19 C -0.326 4.326 20 C -0.093 4.093 21 N -0.138 5.138 22 N -0.139 5.139 23 C -0.023 4.023 24 C 0.001 3.999 25 F -0.199 7.199 26 C -0.013 4.013 27 C -0.126 4.126 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.255 0.745 36 H 0.237 0.763 37 H 0.126 0.874 38 H 0.156 0.844 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.224 0.776 42 H 0.121 0.879 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.908 -29.995 -9.742 31.917 hybrid contribution -0.360 1.501 -0.133 1.549 sum -5.268 -28.494 -9.875 30.613 Atomic orbital electron populations 1.69660 1.06678 1.29233 1.50423 1.25980 0.96553 1.02201 0.96321 0.84961 0.77880 0.77079 0.78615 1.19684 1.19354 1.20041 1.19637 0.92607 0.84220 1.49992 0.90720 1.41920 1.09279 1.04600 1.65472 1.20908 0.88283 0.86120 0.82051 1.90503 1.16184 1.87977 1.56128 1.22380 0.94081 0.89517 1.04590 1.68711 1.31977 1.01551 1.17639 1.24452 1.02443 0.95258 0.92147 1.22255 0.97733 0.86516 0.90562 1.45492 1.12083 1.30669 1.46690 1.17556 0.85714 0.79655 0.78469 1.90782 1.16201 1.74564 1.65721 1.20177 0.94852 1.05413 1.12203 1.24559 0.95120 0.95721 0.93925 1.77163 1.04561 1.11374 1.20744 1.48449 1.04901 1.24876 1.35691 1.22575 1.03962 0.82034 0.93770 1.22135 1.01832 0.82429 0.93483 1.92790 1.97161 1.55809 1.74108 1.23362 0.96455 0.91460 0.90056 1.24346 0.98777 0.88685 1.00805 0.91305 0.76891 0.86715 0.89284 0.89363 0.92418 0.87410 0.74493 0.76319 0.87358 0.84433 0.89244 0.89408 0.77631 0.87872 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.35 13.05 21.66 0.28 -49.06 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 43.35 29.55 68.60 2.03 45.37 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 8 H 0.07 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -29.60 5.29 -306.98 -1.62 -31.22 16 10 C 0.44 21.21 7.85 87.66 0.69 21.90 16 11 O -0.62 -36.08 16.01 -3.08 -0.05 -36.13 16 12 C 0.03 0.85 5.30 85.56 0.45 1.31 16 13 N -0.48 -14.95 5.82 -932.63 -5.43 -20.38 16 14 C -0.01 -0.36 7.53 83.57 0.63 0.27 16 15 C 0.14 3.03 4.59 45.44 0.21 3.24 16 16 N -0.70 -11.48 5.38 -444.95 -2.40 -13.87 16 17 C 0.60 12.50 7.81 86.67 0.68 13.17 16 18 O -0.59 -17.66 16.49 -4.05 -0.07 -17.73 16 19 C -0.31 -4.79 6.13 -20.15 -0.12 -4.92 16 20 C 0.09 1.10 11.50 85.65 0.99 2.08 16 21 N -0.32 -4.38 12.33 -56.28 -0.69 -5.08 16 22 N -0.36 -3.84 3.65 -346.29 -1.26 -5.11 16 23 C 0.10 0.47 6.94 86.38 0.60 1.07 16 24 C 0.06 0.35 7.73 71.98 0.56 0.91 16 25 F -0.22 -2.30 17.36 44.97 0.78 -1.52 16 26 C 0.14 1.72 11.25 84.28 0.95 2.67 16 27 C 0.00 0.05 7.45 83.57 0.62 0.68 16 28 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 30 H 0.11 3.18 8.08 -2.39 -0.02 3.16 16 31 H 0.09 2.39 7.30 -2.39 -0.02 2.38 16 32 H 0.09 2.13 7.42 -2.39 -0.02 2.11 16 33 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.11 2.96 7.45 -2.39 -0.02 2.94 16 35 H 0.42 3.72 7.71 -92.71 -0.71 3.01 16 36 H 0.22 0.92 7.50 -2.91 -0.02 0.90 16 37 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.14 -0.02 8.06 -2.39 -0.02 -0.03 16 39 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.11 1.36 7.90 -2.39 -0.02 1.34 16 Total: -1.00 -83.40 379.07 -1.28 -84.68 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.37 Total: 26.27 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 7.53 Total: 23.78 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -11.12 Total: -124.73 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -0.12 Total: -53.86 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.78 Total: -1.52 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -83.40 -1.28 -84.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267651721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.528 kcal (2) G-P(sol) polarization free energy of solvation -83.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds