Wall clock time and date at job start Sat Apr 11 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35967 * 116.99726 * 2 1 4 4 C 1.37570 * 120.82521 * 179.97438 * 3 2 1 5 5 C 1.38045 * 114.24777 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.75381 * 180.02562 * 5 4 3 7 7 O 1.21623 * 120.00267 * 359.97438 * 6 5 4 8 8 N 1.34786 * 119.99358 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99619 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46769 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47033 * 180.02562 * 10 9 8 12 12 C 1.53045 * 109.45815 * 295.02716 * 11 10 9 13 13 C 1.53191 * 109.31167 * 178.60273 * 12 11 10 14 14 N 1.46924 * 108.76707 * 54.65444 * 13 12 11 15 15 C 1.36936 * 120.63199 * 126.40475 * 14 13 12 16 16 H 1.07997 * 119.99826 * 332.61313 * 15 14 13 17 17 C 1.38816 * 120.00004 * 152.60240 * 15 14 13 18 18 N 1.31622 * 119.99691 * 159.34302 * 17 15 14 19 19 Si 1.86792 * 120.00166 * 339.35204 * 17 15 14 20 20 H 1.48504 * 109.47370 * 92.94032 * 19 17 15 21 21 H 1.48506 * 109.47271 * 212.93676 * 19 17 15 22 22 H 1.48504 * 109.47359 * 332.93708 * 19 17 15 23 23 C 1.46930 * 118.73744 * 306.38116 * 14 13 12 24 24 C 1.53040 * 109.46027 * 174.97258 * 11 10 9 25 25 S 1.77232 * 104.48197 * 359.97438 * 5 4 3 26 26 N 1.30365 * 120.82817 * 0.02708 * 3 2 1 27 27 H 1.08987 * 109.47550 * 60.00027 * 1 2 3 28 28 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47107 * 299.99676 * 1 2 3 30 30 H 1.07992 * 122.87613 * 0.04659 * 4 3 2 31 31 H 0.96999 * 120.00252 * 359.97438 * 8 6 5 32 32 H 1.09002 * 109.47488 * 299.99795 * 9 8 6 33 33 H 1.09001 * 109.47056 * 60.00455 * 9 8 6 34 34 H 1.08996 * 109.47530 * 299.99695 * 10 9 8 35 35 H 1.08994 * 109.47514 * 60.00462 * 10 9 8 36 36 H 1.08999 * 109.46325 * 54.99877 * 11 10 9 37 37 H 1.09001 * 109.49623 * 298.56400 * 12 11 10 38 38 H 1.08997 * 109.49835 * 58.66114 * 12 11 10 39 39 H 1.09003 * 109.59780 * 294.86785 * 13 12 11 40 40 H 1.08998 * 109.70479 * 174.51017 * 13 12 11 41 41 H 0.96999 * 119.99529 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.58948 * 293.82386 * 23 14 13 43 43 H 1.09006 * 109.70140 * 173.46255 * 23 14 13 44 44 H 1.08997 * 109.50002 * 301.33469 * 24 11 10 45 45 H 1.09003 * 109.49819 * 61.43345 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4188 1.3033 0.0005 5 6 3.9005 2.5971 0.0010 6 6 5.3048 3.0354 0.0011 7 8 6.1992 2.2111 0.0012 8 7 5.6002 4.3505 0.0011 9 6 6.9986 4.7870 0.0018 10 6 7.0555 6.3159 0.0010 11 6 8.5160 6.7719 0.0010 12 6 9.1843 6.3418 1.3089 13 6 10.6553 6.7693 1.2907 14 7 10.7249 8.2124 1.0239 15 6 11.4168 9.0445 1.8629 16 1 11.5363 8.7838 2.9041 17 6 11.9648 10.2229 1.3751 18 7 12.2631 11.2020 2.2027 19 14 12.2786 10.4194 -0.4558 20 1 11.1037 11.0669 -1.0927 21 1 13.4823 11.2637 -0.6640 22 1 12.4992 9.0838 -1.0663 23 6 10.0384 8.7457 -0.1606 24 6 8.5743 8.2959 -0.1262 25 16 2.4469 3.6111 0.0000 26 7 1.3520 2.3149 0.0005 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0643 0.4375 0.0002 31 1 4.8869 5.0078 0.0007 32 1 7.4982 4.4050 0.8921 33 1 7.4990 4.4047 -0.8879 34 1 6.5562 6.6977 -0.8895 35 1 6.5551 6.6986 0.8904 36 1 9.0386 6.3170 -0.8405 37 1 8.6778 6.8163 2.1495 38 1 9.1217 5.2584 1.4104 39 1 11.1840 6.2269 0.5068 40 1 11.1127 6.5537 2.2563 41 1 12.6457 12.0256 1.8618 42 1 10.5167 8.3645 -1.0628 43 1 10.0862 9.8347 -0.1539 44 1 8.0776 8.6035 -1.0464 45 1 8.0736 8.7518 0.7280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267943714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:25 Heat of formation + Delta-G solvation = -9.176489 kcal Electronic energy + Delta-G solvation = -26083.127143 eV Core-core repulsion = 22228.572306 eV Total energy + Delta-G solvation = -3854.554837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.75105 -39.97973 -38.33003 -36.96599 -35.71688 -33.77012 -32.01602 -31.43529 -30.40885 -29.25709 -28.42770 -25.98299 -24.57248 -23.34941 -22.48139 -21.75781 -21.18763 -20.30674 -19.40900 -19.04184 -18.21060 -16.91396 -16.76914 -16.67561 -16.25790 -15.87829 -15.24260 -15.21574 -14.61707 -14.51503 -14.12193 -13.91354 -13.88697 -13.70583 -13.38559 -13.17058 -12.83267 -12.57821 -12.35404 -11.98029 -11.90674 -11.74411 -11.64379 -11.50633 -11.39080 -11.20850 -10.79101 -10.64910 -10.50926 -10.42118 -10.26215 -10.09442 -9.79786 -9.63944 -9.46448 -9.36052 -8.92632 -8.59668 -6.94666 -5.93543 -3.28532 -0.38828 0.62260 0.99600 1.70567 2.32463 2.61243 2.86231 3.32146 3.49192 3.52345 4.04316 4.40106 4.54313 4.62494 4.67810 4.72957 4.74344 4.87558 4.98723 5.03068 5.10046 5.18086 5.34146 5.36702 5.52425 5.54874 5.58292 5.79413 5.82414 5.89112 5.96105 6.08829 6.11515 6.24060 6.39426 6.44970 6.47101 6.56077 6.67075 6.69119 6.73446 6.95747 7.00549 7.63272 7.98933 8.34664 8.96895 9.74351 10.12939 11.22633 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037157 B = 0.001768 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.372757 B =15834.634253 C =16072.673475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.293 6.293 3 C 0.306 3.694 4 C -0.127 4.127 5 C -0.181 4.181 6 C 0.591 3.409 7 O -0.512 6.512 8 N -0.716 5.716 9 C 0.116 3.884 10 C -0.127 4.127 11 C -0.076 4.076 12 C -0.133 4.133 13 C 0.147 3.853 14 N -0.606 5.606 15 C -0.258 4.258 16 H 0.085 0.915 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.884 3.116 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.125 3.875 24 C -0.127 4.127 25 S 0.287 5.713 26 N -0.508 5.508 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.180 0.820 31 H 0.400 0.600 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.062 0.938 41 H 0.262 0.738 42 H 0.023 0.977 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.234 -19.091 -6.455 31.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.199 6.199 3 C 0.093 3.907 4 C -0.164 4.164 5 C -0.313 4.313 6 C 0.374 3.626 7 O -0.388 6.388 8 N -0.368 5.368 9 C -0.006 4.006 10 C -0.165 4.165 11 C -0.095 4.095 12 C -0.172 4.172 13 C 0.021 3.979 14 N -0.330 5.330 15 C -0.387 4.387 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.553 5.553 19 Si 0.714 3.286 20 H -0.217 1.217 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.000 4.000 24 C -0.167 4.167 25 S 0.436 5.564 26 N -0.350 5.350 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.197 0.803 31 H 0.235 0.765 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.826 -18.186 -6.407 31.435 hybrid contribution 0.489 -0.789 -1.036 1.391 sum -24.337 -18.975 -7.444 31.746 Atomic orbital electron populations 1.23021 0.76423 1.03868 1.02681 1.86330 1.23220 1.22315 1.88053 1.19928 0.89812 0.85365 0.95606 1.20801 0.92388 0.98678 1.04573 1.26030 0.99369 0.97829 1.08038 1.16647 0.85273 0.83102 0.77553 1.90880 1.46653 1.52507 1.48715 1.45933 1.10298 1.06007 1.74552 1.21678 0.79961 0.95571 1.03373 1.21919 0.99042 0.92873 1.02685 1.20973 0.93030 0.96656 0.98824 1.22136 0.98847 0.99249 0.96928 1.20922 0.92938 0.84821 0.99178 1.44354 1.58426 1.02369 1.27863 1.18935 1.27583 1.00665 0.91471 0.89781 1.25284 0.98700 0.96457 0.97253 1.69843 1.46374 1.04608 1.34460 0.86939 0.76632 0.77539 0.87465 1.21705 1.23230 1.19620 1.21320 0.90382 0.98596 0.89742 1.22048 0.99309 0.94420 1.00889 1.84984 0.89934 1.12159 1.69275 1.76475 1.26526 1.01015 1.30959 0.91994 0.87786 0.91975 0.80312 0.76518 0.90204 0.90807 0.91415 0.91058 0.91423 0.91858 0.92569 0.96095 0.91978 0.92834 0.95899 0.91059 0.92918 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.43 101.05 1.05 1.24 16 2 O -0.29 -2.41 10.51 -19.64 -0.21 -2.62 16 3 C 0.31 2.76 7.36 -18.42 -0.14 2.62 16 4 C -0.13 -1.12 10.09 -39.90 -0.40 -1.52 16 5 C -0.18 -1.61 6.74 -36.05 -0.24 -1.85 16 6 C 0.59 6.26 7.80 -12.65 -0.10 6.16 16 7 O -0.51 -7.19 16.95 5.26 0.09 -7.10 16 8 N -0.72 -6.28 5.55 -61.48 -0.34 -6.62 16 9 C 0.12 1.16 5.43 -4.04 -0.02 1.13 16 10 C -0.13 -1.27 4.80 -26.73 -0.13 -1.40 16 11 C -0.08 -1.03 2.15 -90.57 -0.19 -1.23 16 12 C -0.13 -2.00 5.15 -26.61 -0.14 -2.14 16 13 C 0.15 2.83 6.52 -3.71 -0.02 2.80 16 14 N -0.61 -14.17 2.77 -172.31 -0.48 -14.65 16 15 C -0.26 -7.19 10.04 -15.06 -0.15 -7.34 16 16 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 17 C 0.02 0.63 5.23 -17.43 -0.09 0.53 16 18 N -0.91 -27.86 13.97 55.49 0.78 -27.08 16 19 Si 0.88 22.35 24.34 -169.99 -4.14 18.22 16 20 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 21 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 22 H -0.27 -6.76 6.64 56.52 0.38 -6.38 16 23 C 0.13 2.65 4.20 -3.71 -0.02 2.64 16 24 C -0.13 -2.07 5.36 -26.61 -0.14 -2.22 16 25 S 0.29 2.16 23.27 -107.50 -2.50 -0.34 16 26 N -0.51 -4.67 11.03 29.19 0.32 -4.35 16 27 H 0.06 0.32 8.12 -51.94 -0.42 -0.10 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.40 2.56 7.83 -40.82 -0.32 2.24 16 32 H 0.08 0.87 6.54 -51.93 -0.34 0.54 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.73 6.50 -51.93 -0.34 0.39 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.02 0.49 7.08 -51.93 -0.37 0.12 16 43 H 0.07 1.68 4.50 -51.93 -0.23 1.44 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -33.27 374.38 -8.26 -41.53 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.69 Total: -2.05 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.73 Total: -0.57 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.28 Total: -52.70 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.12 Total: -9.72 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.22 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.50 Total: -0.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.27 -8.26 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267943714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.354 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds