Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35967 * 116.99726 * 2 1 4 4 C 1.37570 * 120.82521 * 179.97438 * 3 2 1 5 5 C 1.38045 * 114.24777 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.75381 * 180.02562 * 5 4 3 7 7 O 1.21623 * 120.00267 * 359.97438 * 6 5 4 8 8 N 1.34786 * 119.99358 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99619 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46769 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47033 * 180.02562 * 10 9 8 12 12 C 1.53045 * 109.45815 * 295.02716 * 11 10 9 13 13 C 1.53191 * 109.31167 * 178.60273 * 12 11 10 14 14 N 1.46924 * 108.76707 * 54.65444 * 13 12 11 15 15 C 1.36936 * 120.63199 * 126.40475 * 14 13 12 16 16 H 1.07997 * 119.99826 * 332.61313 * 15 14 13 17 17 C 1.38816 * 120.00004 * 152.60240 * 15 14 13 18 18 N 1.31622 * 119.99691 * 159.34302 * 17 15 14 19 19 Si 1.86792 * 120.00166 * 339.35204 * 17 15 14 20 20 H 1.48504 * 109.47370 * 92.94032 * 19 17 15 21 21 H 1.48506 * 109.47271 * 212.93676 * 19 17 15 22 22 H 1.48504 * 109.47359 * 332.93708 * 19 17 15 23 23 C 1.46930 * 118.73744 * 306.38116 * 14 13 12 24 24 C 1.53040 * 109.46027 * 174.97258 * 11 10 9 25 25 S 1.77232 * 104.48197 * 359.97438 * 5 4 3 26 26 N 1.30365 * 120.82817 * 0.02708 * 3 2 1 27 27 H 1.08987 * 109.47550 * 60.00027 * 1 2 3 28 28 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47107 * 299.99676 * 1 2 3 30 30 H 1.07992 * 122.87613 * 0.04659 * 4 3 2 31 31 H 0.96999 * 120.00252 * 359.97438 * 8 6 5 32 32 H 1.09002 * 109.47488 * 299.99795 * 9 8 6 33 33 H 1.09001 * 109.47056 * 60.00455 * 9 8 6 34 34 H 1.08996 * 109.47530 * 299.99695 * 10 9 8 35 35 H 1.08994 * 109.47514 * 60.00462 * 10 9 8 36 36 H 1.08999 * 109.46325 * 54.99877 * 11 10 9 37 37 H 1.09001 * 109.49623 * 298.56400 * 12 11 10 38 38 H 1.08997 * 109.49835 * 58.66114 * 12 11 10 39 39 H 1.09003 * 109.59780 * 294.86785 * 13 12 11 40 40 H 1.08998 * 109.70479 * 174.51017 * 13 12 11 41 41 H 0.96999 * 119.99529 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.58948 * 293.82386 * 23 14 13 43 43 H 1.09006 * 109.70140 * 173.46255 * 23 14 13 44 44 H 1.08997 * 109.50002 * 301.33469 * 24 11 10 45 45 H 1.09003 * 109.49819 * 61.43345 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4188 1.3033 0.0005 5 6 3.9005 2.5971 0.0010 6 6 5.3048 3.0354 0.0011 7 8 6.1992 2.2111 0.0012 8 7 5.6002 4.3505 0.0011 9 6 6.9986 4.7870 0.0018 10 6 7.0555 6.3159 0.0010 11 6 8.5160 6.7719 0.0010 12 6 9.1843 6.3418 1.3089 13 6 10.6553 6.7693 1.2907 14 7 10.7249 8.2124 1.0239 15 6 11.4168 9.0445 1.8629 16 1 11.5363 8.7838 2.9041 17 6 11.9648 10.2229 1.3751 18 7 12.2631 11.2020 2.2027 19 14 12.2786 10.4194 -0.4558 20 1 11.1037 11.0669 -1.0927 21 1 13.4823 11.2637 -0.6640 22 1 12.4992 9.0838 -1.0663 23 6 10.0384 8.7457 -0.1606 24 6 8.5743 8.2959 -0.1262 25 16 2.4469 3.6111 0.0000 26 7 1.3520 2.3149 0.0005 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0643 0.4375 0.0002 31 1 4.8869 5.0078 0.0007 32 1 7.4982 4.4050 0.8921 33 1 7.4990 4.4047 -0.8879 34 1 6.5562 6.6977 -0.8895 35 1 6.5551 6.6986 0.8904 36 1 9.0386 6.3170 -0.8405 37 1 8.6778 6.8163 2.1495 38 1 9.1217 5.2584 1.4104 39 1 11.1840 6.2269 0.5068 40 1 11.1127 6.5537 2.2563 41 1 12.6457 12.0256 1.8618 42 1 10.5167 8.3645 -1.0628 43 1 10.0862 9.8347 -0.1539 44 1 8.0776 8.6035 -1.0464 45 1 8.0736 8.7518 0.7280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267943714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = -34.371269 kcal Electronic energy + Delta-G solvation = -26084.219671 eV Core-core repulsion = 22228.572306 eV Total energy + Delta-G solvation = -3855.647365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39518 -40.76243 -39.67765 -37.59838 -36.81735 -35.16899 -33.47949 -32.55412 -31.86094 -30.42935 -29.00341 -27.14674 -25.72393 -24.74412 -23.68428 -22.65064 -22.40123 -21.16643 -20.66150 -19.76778 -18.81579 -18.75609 -17.41708 -17.34989 -17.25680 -17.02569 -16.68484 -15.91842 -15.78705 -15.48933 -15.37504 -15.23286 -14.95169 -14.62161 -14.51127 -14.40468 -14.24816 -14.01652 -13.39013 -13.16830 -13.01800 -12.87903 -12.58329 -12.45139 -12.27195 -12.15773 -12.14051 -12.02151 -11.99317 -11.66263 -11.54503 -11.39940 -11.11484 -11.02915 -10.95553 -10.62079 -10.21417 -9.50083 -8.88460 -8.15081 -5.45505 -1.06667 -0.00603 0.37253 1.03277 1.30111 1.42276 1.51480 1.65481 1.84696 2.25506 2.43009 3.08928 3.37579 3.41709 3.73690 3.78862 3.94271 4.04106 4.09385 4.26490 4.28664 4.34182 4.38348 4.45494 4.52817 4.64413 4.64991 4.69869 4.71100 4.80001 4.94559 4.95888 4.97466 5.04947 5.08062 5.26827 5.29827 5.32096 5.34826 5.40299 5.68091 5.89944 5.91324 6.14493 6.25390 6.89495 6.96028 7.66685 8.06951 9.05122 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037157 B = 0.001768 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.372757 B =15834.634253 C =16072.673475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.301 3.699 4 C -0.132 4.132 5 C -0.190 4.190 6 C 0.594 3.406 7 O -0.552 6.552 8 N -0.704 5.704 9 C 0.120 3.880 10 C -0.113 4.113 11 C -0.071 4.071 12 C -0.123 4.123 13 C 0.139 3.861 14 N -0.621 5.621 15 C -0.248 4.248 16 H 0.048 0.952 17 C -0.038 4.038 18 N -0.959 5.959 19 Si 0.950 3.050 20 H -0.272 1.272 21 H -0.313 1.313 22 H -0.263 1.263 23 C 0.116 3.884 24 C -0.119 4.119 25 S 0.333 5.667 26 N -0.526 5.526 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.060 0.940 30 H 0.182 0.818 31 H 0.414 0.586 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.047 0.953 41 H 0.261 0.739 42 H 0.030 0.970 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.657 -20.214 -8.519 34.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.088 3.912 4 C -0.170 4.170 5 C -0.322 4.322 6 C 0.378 3.622 7 O -0.431 6.431 8 N -0.355 5.355 9 C -0.003 4.003 10 C -0.151 4.151 11 C -0.091 4.091 12 C -0.161 4.161 13 C 0.014 3.986 14 N -0.346 5.346 15 C -0.377 4.377 16 H 0.066 0.934 17 C -0.232 4.232 18 N -0.606 5.606 19 Si 0.779 3.221 20 H -0.199 1.199 21 H -0.242 1.242 22 H -0.188 1.188 23 C -0.009 4.009 24 C -0.158 4.158 25 S 0.482 5.518 26 N -0.369 5.369 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.079 0.921 30 H 0.199 0.801 31 H 0.251 0.749 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.311 -19.323 -8.494 34.517 hybrid contribution 1.186 -0.486 -0.311 1.319 sum -26.125 -19.809 -8.805 33.947 Atomic orbital electron populations 1.23242 0.75002 1.05590 1.02561 1.86322 1.24684 1.22107 1.87922 1.19958 0.89873 0.85608 0.95737 1.20896 0.92543 0.98968 1.04560 1.25871 0.99203 0.98442 1.08702 1.16786 0.85448 0.83179 0.76815 1.90862 1.47898 1.53566 1.50744 1.45787 1.10434 1.05783 1.73512 1.21564 0.80367 0.95447 1.02908 1.21746 0.96454 0.92669 1.04236 1.20914 0.95497 0.94755 0.97884 1.22019 0.95603 1.00734 0.97766 1.21136 0.96081 0.82635 0.98739 1.44505 1.58525 1.03659 1.27942 1.18886 1.27028 1.01009 0.90819 0.93413 1.25922 0.99376 0.96356 1.01589 1.69978 1.48657 1.05368 1.36565 0.85862 0.76417 0.77594 0.82227 1.19852 1.24222 1.18782 1.21428 0.93550 0.97143 0.88767 1.21941 0.95569 0.96232 1.02078 1.84768 0.88235 1.10643 1.68120 1.76390 1.27540 1.01662 1.31297 0.92032 0.85231 0.92107 0.80095 0.74915 0.91172 0.90960 0.89090 0.90375 0.90676 0.92897 0.89941 0.95063 0.93390 0.93054 0.95173 0.93681 0.89780 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.43 113.37 1.18 1.46 16 2 O -0.30 -4.67 10.51 -93.17 -0.98 -5.65 16 3 C 0.30 5.05 7.36 84.75 0.62 5.68 16 4 C -0.13 -2.18 10.09 22.07 0.22 -1.96 16 5 C -0.19 -3.06 6.74 24.56 0.17 -2.90 16 6 C 0.59 11.46 7.80 86.57 0.68 12.13 16 7 O -0.55 -14.92 16.95 -4.11 -0.07 -14.98 16 8 N -0.70 -10.23 5.55 -466.68 -2.59 -12.82 16 9 C 0.12 1.98 5.43 86.38 0.47 2.45 16 10 C -0.11 -1.78 4.80 30.59 0.15 -1.63 16 11 C -0.07 -1.69 2.15 -10.76 -0.02 -1.71 16 12 C -0.12 -3.43 5.15 30.67 0.16 -3.27 16 13 C 0.14 5.21 6.52 86.36 0.56 5.77 16 14 N -0.62 -28.86 2.77 -699.08 -1.94 -30.79 16 15 C -0.25 -14.17 10.04 84.03 0.84 -13.33 16 16 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 17 C -0.04 -2.24 5.23 84.86 0.44 -1.80 16 18 N -0.96 -60.78 13.97 21.65 0.30 -60.48 16 19 Si 0.95 46.77 24.34 68.60 1.67 48.44 16 20 H -0.27 -12.49 6.62 99.48 0.66 -11.83 16 21 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 22 H -0.26 -12.44 6.64 99.48 0.66 -11.78 16 23 C 0.12 4.70 4.20 86.36 0.36 5.06 16 24 C -0.12 -3.51 5.36 30.67 0.16 -3.34 16 25 S 0.33 4.22 23.27 -56.49 -1.31 2.90 16 26 N -0.53 -8.80 11.03 -175.20 -1.93 -10.74 16 27 H 0.06 0.56 8.12 -2.39 -0.02 0.54 16 28 H 0.13 0.45 8.14 -2.38 -0.02 0.44 16 29 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 30 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.41 3.76 7.83 -92.71 -0.73 3.04 16 32 H 0.07 1.33 6.54 -2.39 -0.02 1.32 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.91 6.50 -2.39 -0.02 1.89 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 41 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.03 1.19 7.08 -2.39 -0.02 1.17 16 43 H 0.04 2.06 4.50 -2.38 -0.01 2.05 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -74.38 374.38 -0.66 -75.04 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.19 Total: 6.47 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 6.00 Total: 2.61 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -6.16 Total: -114.83 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.05 Total: -20.63 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.67 Total: 48.44 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.31 Total: 2.90 kcal Total: -74.38 -0.66 -75.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267943714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.673 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds