Wall clock time and date at job start Sat Apr 11 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35958 * 117.00279 * 2 1 4 4 C 1.37574 * 120.82457 * 180.26180 * 3 2 1 5 5 C 1.38040 * 114.24575 * 180.23816 * 4 3 2 6 6 C 1.47120 * 127.75636 * 179.81043 * 5 4 3 7 7 O 1.21635 * 120.00138 * 334.26436 * 6 5 4 8 8 N 1.34773 * 119.99816 * 154.26727 * 6 5 4 9 9 C 1.46922 * 120.63342 * 353.54396 * 8 6 5 10 10 C 1.53193 * 108.77751 * 233.62848 * 9 8 6 11 11 C 1.53035 * 109.33982 * 305.34962 * 10 9 8 12 12 C 1.53110 * 109.50227 * 61.34754 * 11 10 9 13 13 H 1.08995 * 109.51764 * 58.62983 * 12 11 10 14 14 C 1.52999 * 109.48697 * 178.70000 * 12 11 10 15 15 C 1.53008 * 109.47070 * 184.85329 * 14 12 11 16 16 N 1.46502 * 109.47060 * 179.97438 * 15 14 12 17 17 C 1.36938 * 119.99717 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00341 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99649 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00012 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46921 * 59.99991 * 21 19 17 23 23 H 1.48495 * 109.47482 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46851 * 300.00381 * 21 19 17 25 25 C 1.46933 * 120.62951 * 173.56852 * 8 6 5 26 26 S 1.77233 * 104.48324 * 359.55000 * 5 4 3 27 27 N 1.30356 * 120.82838 * 359.97271 * 3 2 1 28 28 H 1.09009 * 109.46511 * 59.99790 * 1 2 3 29 29 H 1.08997 * 109.47869 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46835 * 300.00708 * 1 2 3 31 31 H 1.07993 * 122.87575 * 0.09020 * 4 3 2 32 32 H 1.09003 * 109.58506 * 113.84493 * 9 8 6 33 33 H 1.08998 * 109.58950 * 353.42024 * 9 8 6 34 34 H 1.09006 * 109.49237 * 65.31825 * 10 9 8 35 35 H 1.09001 * 109.49981 * 185.37921 * 10 9 8 36 36 H 1.08999 * 109.45864 * 181.39738 * 11 10 9 37 37 H 1.08997 * 109.46611 * 301.35791 * 11 10 9 38 38 H 1.09003 * 109.47280 * 304.84757 * 14 12 11 39 39 H 1.09003 * 109.47634 * 64.85483 * 14 12 11 40 40 H 1.08992 * 109.47297 * 299.99857 * 15 14 12 41 41 H 1.09000 * 109.46762 * 60.00164 * 15 14 12 42 42 H 0.96999 * 119.99985 * 0.02562 * 16 15 14 43 43 H 0.97006 * 119.99544 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.58672 * 246.15869 * 25 8 6 45 45 H 1.09000 * 109.58257 * 6.57985 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4190 1.3031 -0.0054 5 6 3.9007 2.5967 0.0006 6 6 5.3051 3.0349 0.0010 7 8 6.1689 2.3080 0.4537 8 7 5.6345 4.2419 -0.5000 9 6 4.6283 5.0715 -1.1768 10 6 5.1587 5.4592 -2.5607 11 6 6.5263 6.1291 -2.4099 12 6 7.5106 5.1441 -1.7731 13 1 7.5878 4.2528 -2.3957 14 6 8.8860 5.8033 -1.6522 15 6 9.8971 4.7812 -1.1287 16 7 11.2142 5.4122 -1.0135 17 6 12.2840 4.6863 -0.5618 18 1 12.1568 3.6487 -0.2908 19 6 13.5318 5.2844 -0.4521 20 7 13.6868 6.5492 -0.7818 21 14 14.9913 4.2941 0.1634 22 1 15.2245 3.1409 -0.7427 23 1 16.1997 5.1568 0.1885 24 1 14.7096 3.7975 1.5343 25 6 7.0069 4.7530 -0.3803 26 16 2.4473 3.6109 -0.0003 27 7 1.3523 2.3148 -0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 4.0643 0.4372 -0.0112 32 1 4.4432 5.9719 -0.5911 33 1 3.7023 4.5069 -1.2854 34 1 5.2575 4.5648 -3.1760 35 1 4.4643 6.1525 -3.0354 36 1 6.8944 6.4281 -3.3913 37 1 6.4315 7.0094 -1.7742 38 1 9.2048 6.1611 -2.6312 39 1 8.8269 6.6432 -0.9599 40 1 9.5784 4.4234 -0.1498 41 1 9.9563 3.9413 -1.8210 42 1 11.3284 6.3443 -1.2565 43 1 14.5588 6.9671 -0.7048 44 1 7.0157 5.6275 0.2704 45 1 7.6502 3.9782 0.0367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269737936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:35 Heat of formation + Delta-G solvation = -13.388018 kcal Electronic energy + Delta-G solvation = -26656.731316 eV Core-core repulsion = 22801.993853 eV Total energy + Delta-G solvation = -3854.737463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75426 -40.30129 -38.05372 -36.77358 -35.43649 -33.65963 -32.29151 -31.77270 -30.62763 -28.58903 -27.61792 -26.43281 -24.57053 -24.10728 -22.66404 -21.89142 -20.87267 -20.14620 -19.49366 -18.78850 -18.06906 -16.99098 -16.79870 -16.54053 -16.41607 -15.64059 -15.15694 -15.08989 -14.72735 -14.44764 -14.12194 -13.90493 -13.73953 -13.64719 -13.37677 -13.26481 -13.06803 -12.78438 -12.52502 -12.30018 -11.87905 -11.66075 -11.44328 -11.32563 -11.19103 -11.11209 -10.93800 -10.81953 -10.64670 -10.45979 -10.32058 -10.27255 -10.10841 -9.92065 -9.61844 -8.91554 -8.80986 -8.72033 -6.86644 -5.71736 -2.99941 -0.25712 0.67553 1.10302 1.82802 2.31771 2.69077 2.87382 3.48621 3.52297 3.53913 3.94837 4.33567 4.44227 4.61659 4.62841 4.70189 4.72196 4.79616 4.81799 4.87122 5.03047 5.07896 5.11846 5.25884 5.33683 5.50884 5.55230 5.59037 5.63245 5.66833 5.74310 5.83511 5.92287 5.99644 6.12785 6.18018 6.30768 6.43222 6.43985 6.57494 6.90220 6.93159 6.99141 7.72004 7.75648 8.47688 9.58546 10.17000 10.51586 11.51196 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.002165 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.376983 B =12929.467782 C =14040.803721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.309 3.691 4 C -0.129 4.129 5 C -0.179 4.179 6 C 0.590 3.410 7 O -0.507 6.507 8 N -0.600 5.600 9 C 0.092 3.908 10 C -0.131 4.131 11 C -0.116 4.116 12 C -0.096 4.096 13 H 0.076 0.924 14 C -0.118 4.118 15 C 0.150 3.850 16 N -0.734 5.734 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.115 3.885 26 S 0.299 5.701 27 N -0.526 5.526 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.178 0.822 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.993 -4.919 -2.033 31.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.095 3.905 4 C -0.166 4.166 5 C -0.310 4.310 6 C 0.375 3.625 7 O -0.382 6.382 8 N -0.333 5.333 9 C -0.033 4.033 10 C -0.169 4.169 11 C -0.154 4.154 12 C -0.116 4.116 13 H 0.095 0.905 14 C -0.157 4.157 15 C 0.022 3.978 16 N -0.378 5.378 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.006 4.006 26 S 0.449 5.551 27 N -0.366 5.366 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.196 0.804 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -31.814 -4.143 -1.698 32.128 hybrid contribution 1.504 -1.564 0.222 2.181 sum -30.310 -5.707 -1.476 30.878 Atomic orbital electron populations 1.22997 0.76556 1.03737 1.02588 1.86320 1.23116 1.22585 1.88063 1.19882 0.89720 0.85332 0.95564 1.20790 0.92506 0.98561 1.04765 1.26034 0.99465 0.97728 1.07804 1.16717 0.85042 0.81640 0.79092 1.90904 1.48487 1.52774 1.46045 1.47989 1.12142 1.16990 1.56144 1.22225 0.90795 0.95689 0.94594 1.21894 0.97936 1.01534 0.95575 1.21627 0.93847 0.98243 1.01672 1.21488 0.95202 0.99131 0.95789 0.90547 1.21734 0.92741 0.99143 1.02053 1.20721 0.85862 0.94015 0.97165 1.42359 1.03682 1.12212 1.79535 1.19213 0.87779 0.94411 1.35470 0.91230 1.24741 0.97708 0.96215 1.02506 1.69655 1.23227 1.10775 1.54776 0.86258 0.82293 0.78894 0.78715 1.21284 1.21720 1.21253 1.21981 0.80243 1.00553 0.97785 1.85090 0.89195 1.11679 1.69154 1.76397 1.27732 1.01727 1.30737 0.92067 0.87889 0.92068 0.80441 0.90060 0.90074 0.91242 0.90260 0.91073 0.91408 0.91399 0.91671 0.96173 0.96474 0.78358 0.93551 0.90568 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.43 101.05 1.05 1.27 16 2 O -0.30 -2.70 10.51 -19.61 -0.21 -2.91 16 3 C 0.31 3.08 7.36 -18.42 -0.14 2.95 16 4 C -0.13 -1.31 10.18 -39.90 -0.41 -1.71 16 5 C -0.18 -1.87 6.10 -36.05 -0.22 -2.09 16 6 C 0.59 7.49 7.65 -12.66 -0.10 7.39 16 7 O -0.51 -8.34 16.45 5.25 0.09 -8.25 16 8 N -0.60 -6.56 2.97 -174.15 -0.52 -7.07 16 9 C 0.09 0.71 5.66 -3.71 -0.02 0.69 16 10 C -0.13 -0.96 6.08 -26.61 -0.16 -1.13 16 11 C -0.12 -1.05 5.17 -26.66 -0.14 -1.19 16 12 C -0.10 -1.15 2.34 -90.47 -0.21 -1.37 16 13 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 14 C -0.12 -1.80 4.80 -26.73 -0.13 -1.93 16 15 C 0.15 3.04 6.02 -4.04 -0.02 3.02 16 16 N -0.73 -18.99 5.60 -59.91 -0.34 -19.33 16 17 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.94 -28.69 13.06 55.49 0.72 -27.97 16 21 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C 0.12 1.43 5.33 -3.71 -0.02 1.41 16 26 S 0.30 2.52 20.19 -107.50 -2.17 0.35 16 27 N -0.53 -5.23 11.03 29.19 0.32 -4.91 16 28 H 0.06 0.36 8.13 -51.92 -0.42 -0.06 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.57 3.77 -24.92 -0.09 0.48 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.42 6.70 -51.93 -0.35 0.07 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 43 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.10 1.57 5.71 -51.93 -0.30 1.28 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -34.08 377.16 -8.71 -42.79 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.51 Total: 3.97 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.76 Total: -0.25 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.19 Total: -59.28 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.12 Total: -11.16 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.17 Total: 0.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.08 -8.71 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269737936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.398 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds