Wall clock time and date at job start Sat Apr 11 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35958 * 117.00279 * 2 1 4 4 C 1.37574 * 120.82457 * 180.26180 * 3 2 1 5 5 C 1.38040 * 114.24575 * 180.23816 * 4 3 2 6 6 C 1.47120 * 127.75636 * 179.81043 * 5 4 3 7 7 O 1.21635 * 120.00138 * 334.26436 * 6 5 4 8 8 N 1.34773 * 119.99816 * 154.26727 * 6 5 4 9 9 C 1.46922 * 120.63342 * 353.54396 * 8 6 5 10 10 C 1.53193 * 108.77751 * 233.62848 * 9 8 6 11 11 C 1.53035 * 109.33982 * 305.34962 * 10 9 8 12 12 C 1.53110 * 109.50227 * 61.34754 * 11 10 9 13 13 H 1.08995 * 109.51764 * 58.62983 * 12 11 10 14 14 C 1.52999 * 109.48697 * 178.70000 * 12 11 10 15 15 C 1.53008 * 109.47070 * 184.85329 * 14 12 11 16 16 N 1.46502 * 109.47060 * 179.97438 * 15 14 12 17 17 C 1.36938 * 119.99717 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00341 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99649 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00012 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46921 * 59.99991 * 21 19 17 23 23 H 1.48495 * 109.47482 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46851 * 300.00381 * 21 19 17 25 25 C 1.46933 * 120.62951 * 173.56852 * 8 6 5 26 26 S 1.77233 * 104.48324 * 359.55000 * 5 4 3 27 27 N 1.30356 * 120.82838 * 359.97271 * 3 2 1 28 28 H 1.09009 * 109.46511 * 59.99790 * 1 2 3 29 29 H 1.08997 * 109.47869 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46835 * 300.00708 * 1 2 3 31 31 H 1.07993 * 122.87575 * 0.09020 * 4 3 2 32 32 H 1.09003 * 109.58506 * 113.84493 * 9 8 6 33 33 H 1.08998 * 109.58950 * 353.42024 * 9 8 6 34 34 H 1.09006 * 109.49237 * 65.31825 * 10 9 8 35 35 H 1.09001 * 109.49981 * 185.37921 * 10 9 8 36 36 H 1.08999 * 109.45864 * 181.39738 * 11 10 9 37 37 H 1.08997 * 109.46611 * 301.35791 * 11 10 9 38 38 H 1.09003 * 109.47280 * 304.84757 * 14 12 11 39 39 H 1.09003 * 109.47634 * 64.85483 * 14 12 11 40 40 H 1.08992 * 109.47297 * 299.99857 * 15 14 12 41 41 H 1.09000 * 109.46762 * 60.00164 * 15 14 12 42 42 H 0.96999 * 119.99985 * 0.02562 * 16 15 14 43 43 H 0.97006 * 119.99544 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.58672 * 246.15869 * 25 8 6 45 45 H 1.09000 * 109.58257 * 6.57985 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4190 1.3031 -0.0054 5 6 3.9007 2.5967 0.0006 6 6 5.3051 3.0349 0.0010 7 8 6.1689 2.3080 0.4537 8 7 5.6345 4.2419 -0.5000 9 6 4.6283 5.0715 -1.1768 10 6 5.1587 5.4592 -2.5607 11 6 6.5263 6.1291 -2.4099 12 6 7.5106 5.1441 -1.7731 13 1 7.5878 4.2528 -2.3957 14 6 8.8860 5.8033 -1.6522 15 6 9.8971 4.7812 -1.1287 16 7 11.2142 5.4122 -1.0135 17 6 12.2840 4.6863 -0.5618 18 1 12.1568 3.6487 -0.2908 19 6 13.5318 5.2844 -0.4521 20 7 13.6868 6.5492 -0.7818 21 14 14.9913 4.2941 0.1634 22 1 15.2245 3.1409 -0.7427 23 1 16.1997 5.1568 0.1885 24 1 14.7096 3.7975 1.5343 25 6 7.0069 4.7530 -0.3803 26 16 2.4473 3.6109 -0.0003 27 7 1.3523 2.3148 -0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 4.0643 0.4372 -0.0112 32 1 4.4432 5.9719 -0.5911 33 1 3.7023 4.5069 -1.2854 34 1 5.2575 4.5648 -3.1760 35 1 4.4643 6.1525 -3.0354 36 1 6.8944 6.4281 -3.3913 37 1 6.4315 7.0094 -1.7742 38 1 9.2048 6.1611 -2.6312 39 1 8.8269 6.6432 -0.9599 40 1 9.5784 4.4234 -0.1498 41 1 9.9563 3.9413 -1.8210 42 1 11.3284 6.3443 -1.2565 43 1 14.5588 6.9671 -0.7048 44 1 7.0157 5.6275 0.2704 45 1 7.6502 3.9782 0.0367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269737936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:34 Heat of formation + Delta-G solvation = -37.908227 kcal Electronic energy + Delta-G solvation = -26657.794592 eV Core-core repulsion = 22801.993853 eV Total energy + Delta-G solvation = -3855.800739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60159 -41.07838 -39.04081 -37.51256 -36.99582 -35.13062 -33.47266 -32.70417 -32.14609 -29.39521 -28.85755 -27.27550 -25.96997 -25.12625 -24.07821 -22.71677 -22.17542 -21.14010 -20.29588 -19.60478 -19.10826 -18.75187 -17.61223 -17.31196 -17.26018 -16.72870 -16.52718 -16.00418 -15.77925 -15.50472 -15.32422 -15.25804 -14.90142 -14.63727 -14.56490 -14.27090 -14.17132 -13.97132 -13.47446 -13.02786 -12.97364 -12.83204 -12.61115 -12.58780 -12.38582 -12.18804 -12.11955 -12.09961 -11.93152 -11.79244 -11.73346 -11.59221 -11.25572 -11.14563 -10.93099 -10.90217 -9.81632 -9.38633 -9.00512 -7.96380 -5.25166 -1.05906 -0.07293 0.38640 1.03890 1.45929 1.47966 1.49275 1.55540 1.78780 2.18314 2.55269 3.16008 3.36442 3.57527 3.66934 3.83282 3.85933 4.00866 4.01574 4.07441 4.28912 4.32076 4.34947 4.40650 4.43671 4.49068 4.53236 4.67077 4.70819 4.71504 4.81570 4.84312 4.91631 4.97800 5.06017 5.12341 5.25102 5.33182 5.36507 5.42603 5.47952 5.53728 5.92873 6.10151 6.26665 6.77497 7.32641 8.08724 8.33141 9.26633 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.002165 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.376983 B =12929.467782 C =14040.803721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.304 3.696 4 C -0.133 4.133 5 C -0.195 4.195 6 C 0.588 3.412 7 O -0.558 6.558 8 N -0.594 5.594 9 C 0.086 3.914 10 C -0.126 4.126 11 C -0.112 4.112 12 C -0.086 4.086 13 H 0.064 0.936 14 C -0.104 4.104 15 C 0.148 3.852 16 N -0.746 5.746 17 C -0.251 4.251 18 H 0.069 0.931 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.974 3.026 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.117 3.883 26 S 0.356 5.644 27 N -0.538 5.538 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.060 0.940 31 H 0.177 0.823 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.016 0.984 41 H 0.009 0.991 42 H 0.376 0.624 43 H 0.253 0.747 44 H 0.089 0.911 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.218 -4.245 -2.467 33.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.213 6.213 3 C 0.091 3.909 4 C -0.171 4.171 5 C -0.327 4.327 6 C 0.374 3.626 7 O -0.437 6.437 8 N -0.326 5.326 9 C -0.038 4.038 10 C -0.164 4.164 11 C -0.149 4.149 12 C -0.106 4.106 13 H 0.082 0.918 14 C -0.142 4.142 15 C 0.022 3.978 16 N -0.389 5.389 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.267 4.267 20 N -0.617 5.617 21 Si 0.802 3.198 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.005 4.005 26 S 0.507 5.493 27 N -0.380 5.380 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.079 0.921 31 H 0.194 0.806 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.034 0.966 41 H 0.027 0.973 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -34.103 -3.464 -2.153 34.346 hybrid contribution 2.093 -1.772 0.347 2.764 sum -32.010 -5.236 -1.806 32.486 Atomic orbital electron populations 1.23239 0.74961 1.05528 1.02596 1.86313 1.24742 1.22306 1.87919 1.19827 0.89582 0.85673 0.95804 1.20862 0.92867 0.98672 1.04732 1.25801 0.99194 0.98720 1.08949 1.17013 0.85549 0.81624 0.78443 1.90873 1.50106 1.54309 1.48438 1.48057 1.12187 1.16770 1.55545 1.22548 0.90054 0.96120 0.95054 1.21896 0.97445 1.01838 0.95202 1.21605 0.93770 0.97722 1.01831 1.21367 0.94229 0.99341 0.95652 0.91800 1.21589 0.93047 0.97869 1.01697 1.20882 0.84949 0.95072 0.96934 1.42567 1.05083 1.11902 1.79323 1.19577 0.88980 0.94691 1.34995 0.91292 1.25571 1.00411 0.97382 1.03319 1.69801 1.23606 1.12208 1.56084 0.85217 0.78705 0.77535 0.78346 1.20480 1.21647 1.20527 1.21830 0.80788 0.99836 0.98056 1.84798 0.86842 1.09923 1.67711 1.76313 1.28556 1.02284 1.30803 0.91901 0.85312 0.92128 0.80602 0.87537 0.89272 0.91990 0.87021 0.90493 0.90055 0.91347 0.91166 0.96575 0.97350 0.79230 0.93873 0.89288 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.43 113.37 1.18 1.51 16 2 O -0.31 -5.36 10.51 -93.08 -0.98 -6.34 16 3 C 0.30 5.82 7.36 84.75 0.62 6.44 16 4 C -0.13 -2.69 10.18 22.07 0.22 -2.47 16 5 C -0.20 -3.96 6.10 24.56 0.15 -3.81 16 6 C 0.59 15.07 7.65 86.57 0.66 15.73 16 7 O -0.56 -19.38 16.45 -4.14 -0.07 -19.45 16 8 N -0.59 -12.45 2.97 -823.13 -2.45 -14.90 16 9 C 0.09 1.07 5.66 86.36 0.49 1.56 16 10 C -0.13 -1.42 6.08 30.67 0.19 -1.23 16 11 C -0.11 -1.71 5.17 30.64 0.16 -1.55 16 12 C -0.09 -1.99 2.34 -10.70 -0.03 -2.02 16 13 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 14 C -0.10 -3.12 4.80 30.60 0.15 -2.98 16 15 C 0.15 6.16 6.02 86.38 0.52 6.68 16 16 N -0.75 -39.41 5.60 -343.45 -1.92 -41.33 16 17 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 18 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 19 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 20 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 21 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 25 C 0.12 2.86 5.33 86.36 0.46 3.32 16 26 S 0.36 5.22 20.19 -56.49 -1.14 4.08 16 27 N -0.54 -9.83 11.03 -175.21 -1.93 -11.76 16 28 H 0.06 0.64 8.13 -2.38 -0.02 0.62 16 29 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 31 H 0.18 3.47 8.06 -2.91 -0.02 3.44 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.98 3.77 -19.56 -0.07 0.91 16 34 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.02 0.70 6.70 -2.39 -0.02 0.68 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.38 20.60 7.67 -92.71 -0.71 19.89 16 43 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 44 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.07 2.23 5.71 -2.39 -0.01 2.22 16 Total: -1.00 -75.11 377.16 0.14 -74.97 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.24 Total: 21.51 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.09 Total: 3.41 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -6.02 Total: -127.70 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -1.05 Total: -25.79 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.14 Total: 4.08 kcal Total: -75.11 0.14 -74.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269737936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.060 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds