Wall clock time and date at job start Sat Apr 11 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35309 * 125.86761 * 2 1 4 4 C 1.35348 * 106.17682 * 180.11490 * 3 2 1 5 5 C 1.50703 * 126.75397 * 179.84897 * 4 3 2 6 6 N 1.46899 * 109.47107 * 94.70843 * 5 4 3 7 7 C 1.48534 * 111.00138 * 287.39812 * 6 5 4 8 8 C 1.54939 * 103.22430 * 200.27791 * 7 6 5 9 9 C 1.54589 * 102.92297 * 37.41495 * 8 7 6 10 10 C 1.53005 * 110.39192 * 219.07972 * 9 8 7 11 11 N 1.46506 * 110.31124 * 96.95511 * 9 8 7 12 12 C 1.34778 * 119.99702 * 64.28459 * 11 9 8 13 13 O 1.21279 * 120.00217 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00017 * 180.02562 * 12 11 9 15 15 S 1.80997 * 109.47184 * 179.97438 * 14 12 11 16 16 C 1.76197 * 99.99845 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00418 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99936 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00039 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47351 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47227 * 119.99810 * 20 18 16 23 23 H 1.48494 * 109.47166 * 240.00160 * 20 18 16 24 24 C 1.47901 * 111.00170 * 169.99808 * 6 5 4 25 25 N 1.33770 * 106.49568 * 359.58529 * 4 3 2 26 26 N 1.28640 * 108.88442 * 0.26547 * 25 4 3 27 27 H 1.09001 * 109.47521 * 270.33366 * 1 2 3 28 28 H 1.09000 * 109.47163 * 30.33721 * 1 2 3 29 29 H 1.09001 * 109.47024 * 150.33496 * 1 2 3 30 30 H 1.08000 * 126.91387 * 359.95612 * 3 2 1 31 31 H 1.09002 * 109.47152 * 334.70930 * 5 4 3 32 32 H 1.09001 * 109.46980 * 214.71030 * 5 4 3 33 33 H 1.08998 * 110.66727 * 318.71601 * 7 6 5 34 34 H 1.08996 * 110.66709 * 81.84263 * 7 6 5 35 35 H 1.09001 * 110.72385 * 279.05506 * 8 7 6 36 36 H 1.09006 * 110.87184 * 155.84250 * 8 7 6 37 37 H 1.09001 * 109.46738 * 175.76159 * 10 9 8 38 38 H 1.08997 * 109.47260 * 295.76530 * 10 9 8 39 39 H 1.08995 * 109.46991 * 55.76943 * 10 9 8 40 40 H 0.96994 * 120.00436 * 244.28464 * 11 9 8 41 41 H 1.09007 * 109.46512 * 299.99683 * 14 12 11 42 42 H 1.08997 * 109.47136 * 59.99564 * 14 12 11 43 43 H 0.96999 * 120.00454 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.92334 * 265.20140 * 24 6 5 45 45 H 1.09006 * 109.91449 * 26.49643 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6405 -0.0026 5 6 4.7880 1.4735 -0.0069 6 7 5.2624 1.6512 1.3720 7 6 4.3864 2.5894 2.1196 8 6 5.2850 3.0545 3.2930 9 6 6.6813 3.1606 2.6382 10 6 7.7607 2.6602 3.6001 11 7 6.9545 4.5451 2.2445 12 6 7.0554 5.5056 3.1847 13 8 6.9197 5.2238 4.3565 14 6 7.3358 6.9298 2.7798 15 16 7.4116 7.9732 4.2569 16 6 7.7419 9.5351 3.5115 17 1 7.8347 9.6126 2.4383 18 6 7.8829 10.6662 4.3036 19 7 7.7693 10.5720 5.6116 20 14 8.2338 12.3221 3.5134 21 1 8.3138 12.1602 2.0393 22 1 7.1421 13.2715 3.8479 23 1 9.5238 12.8510 4.0245 24 6 6.6122 2.2551 1.3945 25 7 3.4576 -0.6951 0.0052 26 7 2.2191 -1.0430 0.0066 27 1 -0.3634 0.0060 1.0276 28 1 -0.3633 0.8869 -0.5191 29 1 -0.3633 -0.8930 -0.5086 30 1 1.9381 2.1281 -0.0007 31 1 4.5761 2.4480 -0.4466 32 1 5.5562 0.9695 -0.5933 33 1 4.1045 3.4350 1.4923 34 1 3.5015 2.0744 2.4933 35 1 5.2893 2.3137 4.0926 36 1 4.9607 4.0247 3.6695 37 1 8.7281 2.6709 3.0980 38 1 7.7979 3.3101 4.4744 39 1 7.5251 1.6431 3.9132 40 1 7.0626 4.7706 1.3074 41 1 8.2885 6.9766 2.2521 42 1 6.5400 7.2848 2.1251 43 1 7.8675 11.3625 6.1651 44 1 7.3681 1.4728 1.4624 45 1 6.7684 2.8489 0.4938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270539946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:56 Heat of formation + Delta-G solvation = 78.311091 kcal Electronic energy + Delta-G solvation = -26579.232769 eV Core-core repulsion = 22760.764429 eV Total energy + Delta-G solvation = -3818.468340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.55821 -40.35341 -38.28591 -35.42228 -34.50892 -32.47575 -32.43723 -31.06153 -29.91189 -28.55006 -28.41170 -27.04613 -25.50983 -24.84451 -22.45739 -22.20671 -21.25996 -20.78786 -19.34596 -17.89647 -17.61215 -17.03326 -16.58555 -16.10740 -15.95501 -15.28313 -15.02093 -14.87716 -14.82301 -14.22831 -14.19404 -13.92776 -13.67975 -13.46501 -13.20628 -13.16741 -12.89019 -12.60310 -12.46458 -12.11935 -11.97544 -11.82707 -11.65506 -11.37760 -11.12888 -11.09433 -11.03952 -10.99308 -10.81239 -10.77447 -10.39487 -9.82368 -9.59781 -9.24103 -9.09762 -8.88012 -8.70416 -8.24967 -6.51688 -6.23967 -3.94196 1.23370 1.98559 2.18632 3.00187 3.08358 3.19562 3.26199 3.30431 3.63358 3.84389 3.94286 4.13526 4.18288 4.30502 4.44724 4.45677 4.64625 4.67029 4.74866 4.86306 5.01009 5.04590 5.11339 5.13450 5.20371 5.27258 5.34936 5.50512 5.60515 5.63077 5.74080 5.78924 5.85452 5.86768 5.88682 6.01263 6.11790 6.17311 6.18118 6.43232 6.47730 6.67627 6.82719 7.57758 7.72043 8.21338 8.33217 8.62644 9.21619 10.83448 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.002027 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.835742 B =13813.463984 C =14469.243905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.295 5.295 3 C -0.045 4.045 4 C -0.006 4.006 5 C 0.131 3.869 6 N -0.507 5.507 7 C 0.035 3.965 8 C -0.123 4.123 9 C 0.170 3.830 10 C -0.158 4.158 11 N -0.732 5.732 12 C 0.534 3.466 13 O -0.510 6.510 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.039 3.961 25 N -0.251 5.251 26 N -0.089 5.089 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.188 0.812 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.395 0.605 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.095 0.905 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 -19.250 -14.497 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.088 5.088 3 C -0.197 4.197 4 C -0.145 4.145 5 C 0.001 3.999 6 N -0.231 5.231 7 C -0.092 4.092 8 C -0.162 4.162 9 C 0.083 3.917 10 C -0.217 4.217 11 N -0.387 5.387 12 C 0.321 3.679 13 O -0.384 6.384 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.089 4.089 25 N -0.118 5.118 26 N -0.069 5.069 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.205 0.795 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.229 0.771 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.482 -21.710 -12.133 27.827 hybrid contribution 0.073 3.551 -2.763 4.500 sum -12.409 -18.159 -14.896 26.564 Atomic orbital electron populations 1.22278 0.72725 1.05900 1.05140 1.47228 1.09408 1.04932 1.47280 1.23402 0.91038 0.94706 1.10561 1.21703 0.94556 0.91482 1.06748 1.20411 0.92262 0.96517 0.90684 1.64764 1.01864 1.44197 1.12317 1.23305 0.96729 0.93765 0.95424 1.22864 0.93278 1.02848 0.97218 1.21008 0.95716 0.80928 0.94079 1.22197 0.97037 1.01694 1.00729 1.46277 1.75396 1.07188 1.09841 1.20235 0.75534 0.86450 0.85718 1.90667 1.47645 1.82340 1.17774 1.23551 1.04394 0.95255 1.07311 1.85384 1.93503 1.00752 1.03588 1.22907 1.56453 0.93509 0.95478 0.90936 1.24995 0.94738 0.99116 0.94778 1.70022 1.46548 1.30079 1.03595 0.86123 0.78108 0.82083 0.79214 1.19643 1.20581 1.20551 1.23172 0.92038 0.97241 0.96466 1.75071 1.09129 1.12017 1.15541 1.78343 0.96509 1.12102 1.19952 0.88974 0.88284 0.88015 0.79497 0.92527 0.88769 0.93527 0.90366 0.89975 0.89602 0.92698 0.89599 0.91668 0.77084 0.89346 0.89462 0.92231 0.88709 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.21 11.39 59.85 0.68 0.89 16 2 N -0.30 -2.28 3.74 -68.06 -0.25 -2.53 16 3 C -0.05 -0.34 11.47 -17.05 -0.20 -0.53 16 4 C -0.01 -0.06 6.37 -82.78 -0.53 -0.59 16 5 C 0.13 1.10 5.27 -4.98 -0.03 1.07 16 6 N -0.51 -4.94 5.23 -231.89 -1.21 -6.15 16 7 C 0.04 0.35 6.06 -1.90 -0.01 0.34 16 8 C -0.12 -1.50 5.85 -24.87 -0.15 -1.65 16 9 C 0.17 1.96 0.94 -130.46 -0.12 1.84 16 10 C -0.16 -1.99 8.15 37.16 0.30 -1.69 16 11 N -0.73 -9.19 5.15 -46.35 -0.24 -9.43 16 12 C 0.53 9.35 7.04 -10.99 -0.08 9.27 16 13 O -0.51 -10.72 12.75 5.56 0.07 -10.65 16 14 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 15 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 16 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 19 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 20 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.04 0.36 6.12 -2.76 -0.02 0.34 16 25 N -0.25 -3.17 12.41 33.29 0.41 -2.76 16 26 N -0.09 -1.02 13.17 60.35 0.79 -0.23 16 27 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.10 0.01 8.14 -51.93 -0.42 -0.42 16 29 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.19 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.06 0.37 7.83 -51.93 -0.41 -0.03 16 32 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.05 0.42 7.81 -51.93 -0.41 0.02 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 36 H 0.09 1.26 6.81 -51.93 -0.35 0.90 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.37 6.04 -51.93 -0.31 1.05 16 39 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 40 H 0.39 3.87 8.09 -40.82 -0.33 3.54 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.09 0.84 7.68 -51.93 -0.40 0.45 16 45 H 0.05 0.40 7.09 -51.93 -0.37 0.03 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -36.84 383.49 -7.62 -44.47 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.75 Total: 0.54 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 0.28 Total: -6.26 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.23 Total: -46.25 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.84 -7.62 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270539946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.777 kcal (2) G-P(sol) polarization free energy of solvation -36.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds