Wall clock time and date at job start Sat Apr 11 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35309 * 125.86761 * 2 1 4 4 C 1.35348 * 106.17682 * 180.11490 * 3 2 1 5 5 C 1.50703 * 126.75397 * 179.84897 * 4 3 2 6 6 N 1.46899 * 109.47107 * 94.70843 * 5 4 3 7 7 C 1.48534 * 111.00138 * 287.39812 * 6 5 4 8 8 C 1.54939 * 103.22430 * 200.27791 * 7 6 5 9 9 C 1.54589 * 102.92297 * 37.41495 * 8 7 6 10 10 C 1.53005 * 110.39192 * 219.07972 * 9 8 7 11 11 N 1.46506 * 110.31124 * 96.95511 * 9 8 7 12 12 C 1.34778 * 119.99702 * 64.28459 * 11 9 8 13 13 O 1.21279 * 120.00217 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00017 * 180.02562 * 12 11 9 15 15 S 1.80997 * 109.47184 * 179.97438 * 14 12 11 16 16 C 1.76197 * 99.99845 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00418 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99936 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00039 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47351 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47227 * 119.99810 * 20 18 16 23 23 H 1.48494 * 109.47166 * 240.00160 * 20 18 16 24 24 C 1.47901 * 111.00170 * 169.99808 * 6 5 4 25 25 N 1.33770 * 106.49568 * 359.58529 * 4 3 2 26 26 N 1.28640 * 108.88442 * 0.26547 * 25 4 3 27 27 H 1.09001 * 109.47521 * 270.33366 * 1 2 3 28 28 H 1.09000 * 109.47163 * 30.33721 * 1 2 3 29 29 H 1.09001 * 109.47024 * 150.33496 * 1 2 3 30 30 H 1.08000 * 126.91387 * 359.95612 * 3 2 1 31 31 H 1.09002 * 109.47152 * 334.70930 * 5 4 3 32 32 H 1.09001 * 109.46980 * 214.71030 * 5 4 3 33 33 H 1.08998 * 110.66727 * 318.71601 * 7 6 5 34 34 H 1.08996 * 110.66709 * 81.84263 * 7 6 5 35 35 H 1.09001 * 110.72385 * 279.05506 * 8 7 6 36 36 H 1.09006 * 110.87184 * 155.84250 * 8 7 6 37 37 H 1.09001 * 109.46738 * 175.76159 * 10 9 8 38 38 H 1.08997 * 109.47260 * 295.76530 * 10 9 8 39 39 H 1.08995 * 109.46991 * 55.76943 * 10 9 8 40 40 H 0.96994 * 120.00436 * 244.28464 * 11 9 8 41 41 H 1.09007 * 109.46512 * 299.99683 * 14 12 11 42 42 H 1.08997 * 109.47136 * 59.99564 * 14 12 11 43 43 H 0.96999 * 120.00454 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.92334 * 265.20140 * 24 6 5 45 45 H 1.09006 * 109.91449 * 26.49643 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6405 -0.0026 5 6 4.7880 1.4735 -0.0069 6 7 5.2624 1.6512 1.3720 7 6 4.3864 2.5894 2.1196 8 6 5.2850 3.0545 3.2930 9 6 6.6813 3.1606 2.6382 10 6 7.7607 2.6602 3.6001 11 7 6.9545 4.5451 2.2445 12 6 7.0554 5.5056 3.1847 13 8 6.9197 5.2238 4.3565 14 6 7.3358 6.9298 2.7798 15 16 7.4116 7.9732 4.2569 16 6 7.7419 9.5351 3.5115 17 1 7.8347 9.6126 2.4383 18 6 7.8829 10.6662 4.3036 19 7 7.7693 10.5720 5.6116 20 14 8.2338 12.3221 3.5134 21 1 8.3138 12.1602 2.0393 22 1 7.1421 13.2715 3.8479 23 1 9.5238 12.8510 4.0245 24 6 6.6122 2.2551 1.3945 25 7 3.4576 -0.6951 0.0052 26 7 2.2191 -1.0430 0.0066 27 1 -0.3634 0.0060 1.0276 28 1 -0.3633 0.8869 -0.5191 29 1 -0.3633 -0.8930 -0.5086 30 1 1.9381 2.1281 -0.0007 31 1 4.5761 2.4480 -0.4466 32 1 5.5562 0.9695 -0.5933 33 1 4.1045 3.4350 1.4923 34 1 3.5015 2.0744 2.4933 35 1 5.2893 2.3137 4.0926 36 1 4.9607 4.0247 3.6695 37 1 8.7281 2.6709 3.0980 38 1 7.7979 3.3101 4.4744 39 1 7.5251 1.6431 3.9132 40 1 7.0626 4.7706 1.3074 41 1 8.2885 6.9766 2.2521 42 1 6.5400 7.2848 2.1251 43 1 7.8675 11.3625 6.1651 44 1 7.3681 1.4728 1.4624 45 1 6.7684 2.8489 0.4938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270539946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:56 Heat of formation + Delta-G solvation = 49.302967 kcal Electronic energy + Delta-G solvation = -26580.490656 eV Core-core repulsion = 22760.764429 eV Total energy + Delta-G solvation = -3819.726226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.17640 -41.43258 -39.40530 -36.21235 -35.28910 -34.57289 -33.45644 -31.98057 -30.78700 -29.89295 -28.84604 -27.78683 -27.64331 -25.68918 -23.19313 -22.89683 -22.25114 -21.58973 -20.50285 -19.79613 -18.22002 -17.77757 -17.61485 -17.25341 -16.87154 -16.74969 -16.26351 -16.15290 -15.85947 -15.51023 -15.00538 -14.83024 -14.58569 -14.46739 -14.15574 -14.03916 -13.84810 -13.66282 -13.54545 -13.14335 -13.11087 -12.93682 -12.90981 -12.62788 -12.56391 -12.43180 -12.34767 -11.99673 -11.84879 -11.68996 -11.64515 -11.14952 -10.97771 -10.66533 -10.24624 -10.23227 -10.04133 -9.38758 -8.63823 -8.33838 -6.10764 0.66563 1.28648 1.41647 1.46229 1.49921 1.59475 1.61217 1.69206 2.25956 2.31458 3.00413 3.10315 3.32888 3.35817 3.49639 3.72148 3.79142 3.93755 4.01716 4.09262 4.17704 4.29239 4.32757 4.33752 4.38005 4.44107 4.53776 4.58442 4.63382 4.64539 4.78261 4.83490 4.87922 4.94504 4.98121 5.08034 5.16915 5.19084 5.36646 5.43290 5.55759 5.70446 5.89283 6.00762 6.21023 6.59535 7.07897 7.33853 7.55364 8.75399 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.002027 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.835742 B =13813.463984 C =14469.243905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.033 4.033 4 C -0.026 4.026 5 C 0.134 3.866 6 N -0.520 5.520 7 C 0.048 3.952 8 C -0.124 4.124 9 C 0.168 3.832 10 C -0.156 4.156 11 N -0.705 5.705 12 C 0.537 3.463 13 O -0.551 6.551 14 C -0.130 4.130 15 S -0.149 6.149 16 C -0.544 4.544 17 H 0.082 0.918 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.275 1.275 24 C 0.048 3.952 25 N -0.295 5.295 26 N -0.128 5.128 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.225 0.775 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.414 0.586 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.270 0.730 44 H 0.101 0.899 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 -18.564 -17.711 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.082 5.082 3 C -0.186 4.186 4 C -0.166 4.166 5 C 0.004 3.996 6 N -0.245 5.245 7 C -0.079 4.079 8 C -0.164 4.164 9 C 0.082 3.918 10 C -0.214 4.214 11 N -0.361 5.361 12 C 0.323 3.677 13 O -0.429 6.429 14 C -0.281 4.281 15 S 0.078 5.922 16 C -0.692 4.692 17 H 0.100 0.900 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.819 3.181 21 H -0.180 1.180 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.080 4.080 25 N -0.161 5.161 26 N -0.107 5.107 27 H 0.122 0.878 28 H 0.148 0.852 29 H 0.125 0.875 30 H 0.241 0.759 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.251 0.749 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.253 -21.080 -15.403 29.279 hybrid contribution 0.224 3.229 -1.780 3.694 sum -13.030 -17.851 -17.184 27.994 Atomic orbital electron populations 1.22717 0.70043 1.07777 1.06484 1.47636 1.10938 1.04334 1.45314 1.23960 0.90247 0.95985 1.08381 1.22073 0.96124 0.90862 1.07528 1.20475 0.91883 0.97503 0.89708 1.64733 1.01948 1.44276 1.13569 1.23173 0.96044 0.94203 0.94530 1.22775 0.94407 1.01085 0.98087 1.21106 0.94935 0.80401 0.95344 1.22141 0.98125 1.01424 0.99688 1.45991 1.73395 1.06738 1.09945 1.19940 0.75559 0.86463 0.85725 1.90675 1.49759 1.82742 1.19692 1.23390 1.06158 0.94964 1.03638 1.85568 1.93833 1.03062 1.09720 1.23239 1.56200 0.93868 0.95923 0.89973 1.26119 0.94268 1.03596 0.95270 1.70185 1.47822 1.31377 1.05408 0.84921 0.77944 0.76368 0.78818 1.17979 1.19969 1.20085 1.23097 0.92089 0.97007 0.95763 1.74997 1.10109 1.13916 1.17112 1.78253 0.96750 1.13693 1.22009 0.87842 0.85155 0.87506 0.75898 0.89949 0.88667 0.91958 0.90603 0.91093 0.92369 0.91635 0.93305 0.90670 0.74870 0.87550 0.87404 0.92057 0.88123 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 11.39 127.77 1.46 1.64 16 2 N -0.29 -3.92 3.74 -369.24 -1.38 -5.30 16 3 C -0.03 -0.39 11.47 83.49 0.96 0.56 16 4 C -0.03 -0.46 6.37 41.60 0.26 -0.19 16 5 C 0.13 1.83 5.27 85.56 0.45 2.29 16 6 N -0.52 -8.82 5.23 -887.57 -4.64 -13.47 16 7 C 0.05 0.84 6.06 86.65 0.53 1.37 16 8 C -0.12 -2.98 5.85 31.80 0.19 -2.79 16 9 C 0.17 3.64 0.94 4.48 0.00 3.64 16 10 C -0.16 -3.86 8.15 71.98 0.59 -3.27 16 11 N -0.71 -16.19 5.15 -418.95 -2.16 -18.35 16 12 C 0.54 18.47 7.04 87.66 0.62 19.08 16 13 O -0.55 -23.87 12.75 -3.03 -0.04 -23.91 16 14 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 15 S -0.15 -8.08 20.57 -56.49 -1.16 -9.24 16 16 C -0.54 -30.55 9.50 67.96 0.65 -29.90 16 17 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 18 C 0.01 0.68 5.49 84.86 0.47 1.15 16 19 N -0.91 -55.49 13.22 21.65 0.29 -55.21 16 20 Si 1.00 43.02 29.55 68.60 2.03 45.05 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 24 C 0.05 0.74 6.12 86.45 0.53 1.27 16 25 N -0.30 -7.36 12.41 -48.60 -0.60 -7.96 16 26 N -0.13 -2.88 13.17 37.02 0.49 -2.39 16 27 H 0.10 0.08 8.14 -2.39 -0.02 0.07 16 28 H 0.13 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.22 0.79 8.06 -2.91 -0.02 0.76 16 31 H 0.08 0.71 7.83 -2.39 -0.02 0.69 16 32 H 0.10 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.06 0.90 7.81 -2.39 -0.02 0.89 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.82 7.85 -2.39 -0.02 1.80 16 36 H 0.06 1.73 6.81 -2.38 -0.02 1.71 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.60 6.04 -2.39 -0.01 1.59 16 39 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 40 H 0.41 6.52 8.09 -92.71 -0.75 5.77 16 41 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.10 1.49 7.68 -2.39 -0.02 1.47 16 45 H 0.08 0.82 7.09 -2.38 -0.02 0.80 16 Total: -1.00 -84.90 383.49 0.20 -84.70 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.26 Total: 15.71 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 7.13 Total: -9.63 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -8.01 Total: -102.68 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.04 Total: -23.91 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Total: -84.90 0.20 -84.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270539946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.000 kcal (2) G-P(sol) polarization free energy of solvation -84.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds