Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00036 * 2 1 4 4 C 1.50704 * 109.47158 * 179.97438 * 3 2 1 5 5 N 1.28649 * 124.72171 * 89.72476 * 4 3 2 6 6 C 1.33556 * 115.76572 * 179.78674 * 5 4 3 7 7 C 1.47268 * 123.14002 * 180.23490 * 6 5 4 8 8 O 1.21632 * 119.99768 * 186.49263 * 7 6 5 9 9 N 1.34772 * 120.00011 * 6.48976 * 7 6 5 10 10 C 1.46931 * 120.62994 * 7.89270 * 9 7 6 11 11 C 1.52762 * 109.00899 * 233.58451 * 10 9 7 12 12 C 1.53047 * 109.38325 * 305.59018 * 11 10 9 13 13 C 1.53041 * 109.53687 * 61.23891 * 12 11 10 14 14 H 1.08995 * 109.49842 * 58.58720 * 13 12 11 15 15 C 1.53000 * 109.52405 * 178.66916 * 13 12 11 16 16 N 1.46494 * 109.47448 * 184.85555 * 15 13 12 17 17 C 1.36937 * 120.00476 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99581 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00391 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99931 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00181 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46944 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47137 * 120.00039 * 21 19 17 24 24 H 1.48495 * 109.47395 * 239.99950 * 21 19 17 25 25 C 1.46928 * 120.63001 * 188.17258 * 9 7 6 26 26 C 1.35205 * 113.71702 * 0.49620 * 6 5 4 27 27 S 1.70771 * 124.72052 * 270.02328 * 4 3 2 28 28 H 1.08996 * 109.46819 * 300.00039 * 1 2 3 29 29 H 1.08996 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46655 * 59.99871 * 1 2 3 31 31 H 1.09002 * 109.47499 * 299.99785 * 3 2 1 32 32 H 1.09006 * 109.47483 * 59.99859 * 3 2 1 33 33 H 1.08993 * 109.58360 * 353.41532 * 10 9 7 34 34 H 1.09001 * 109.58188 * 113.84356 * 10 9 7 35 35 H 1.08999 * 109.56656 * 185.55487 * 11 10 9 36 36 H 1.08994 * 109.38663 * 65.51245 * 11 10 9 37 37 H 1.09003 * 109.45860 * 301.22256 * 12 11 10 38 38 H 1.08995 * 109.44843 * 181.25109 * 12 11 10 39 39 H 1.08998 * 109.47316 * 304.85774 * 15 13 12 40 40 H 1.09001 * 109.46972 * 64.85219 * 15 13 12 41 41 H 0.96999 * 119.99782 * 359.97438 * 16 15 13 42 42 H 0.96996 * 119.99757 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.58833 * 246.15107 * 25 9 7 44 44 H 1.08998 * 109.58551 * 6.44298 * 25 9 7 45 45 H 1.08000 * 125.58558 * 179.76132 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2431 1.1233 -1.0564 6 6 5.5586 1.0246 -0.8480 7 6 6.5432 0.9469 -1.9404 8 8 7.7152 0.7398 -1.6891 9 7 6.1458 1.1054 -3.2184 10 6 4.7724 1.5255 -3.5286 11 6 4.1552 0.5267 -4.5058 12 6 5.0623 0.3877 -5.7307 13 6 6.4311 -0.1415 -5.2964 14 1 6.3082 -1.1038 -4.7997 15 6 7.3268 -0.3117 -6.5251 16 7 8.5946 -0.9263 -6.1239 17 6 9.5609 -1.1772 -7.0613 18 1 9.3881 -0.9223 -8.0964 19 6 10.7624 -1.7591 -6.6810 20 7 10.9727 -2.0702 -5.4195 21 14 12.0802 -2.1019 -7.9598 22 1 11.6005 -1.6628 -9.2949 23 1 13.3161 -1.3572 -7.6089 24 1 12.3718 -3.5576 -7.9922 25 6 7.0758 0.8553 -4.3280 26 6 5.9015 0.9970 0.4596 27 16 4.4816 1.1093 1.4047 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 -0.8899 31 1 1.6887 1.8463 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 4.1823 1.5506 -2.6126 34 1 4.7874 2.5160 -3.9835 35 1 3.1732 0.8814 -4.8188 36 1 4.0534 -0.4421 -4.0169 37 1 5.1834 1.3615 -6.2053 38 1 4.6120 -0.3079 -6.4387 39 1 6.8274 -0.9511 -7.2531 40 1 7.5209 0.6637 -6.9712 41 1 8.7499 -1.1550 -5.1942 42 1 11.8125 -2.4765 -5.1537 43 1 7.2822 1.7899 -4.8495 44 1 8.0057 0.4406 -3.9390 45 1 6.9076 0.9175 0.8439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566915409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = -6.619794 kcal Electronic energy + Delta-G solvation = -27322.460749 eV Core-core repulsion = 23468.016779 eV Total energy + Delta-G solvation = -3854.443970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96266 -39.19650 -38.19143 -37.37851 -34.79685 -32.77654 -31.93559 -31.55188 -29.70144 -28.60394 -26.80179 -26.17552 -25.32293 -24.02504 -22.98973 -21.53567 -20.98331 -20.03309 -19.48754 -18.34795 -17.10848 -16.99380 -16.63054 -16.22034 -16.14449 -15.52551 -15.28965 -14.76420 -14.60665 -14.27903 -14.20011 -13.95837 -13.51199 -13.39914 -13.18881 -12.85951 -12.77325 -12.67863 -12.40175 -12.28201 -12.09934 -11.93768 -11.46932 -11.01389 -10.92075 -10.76954 -10.63004 -10.32830 -10.29014 -10.18441 -10.03753 -10.00198 -9.90320 -9.56585 -9.30065 -9.13951 -8.79589 -8.33006 -6.81984 -5.65577 -2.95027 0.16973 0.85334 1.26081 1.66378 3.02750 3.27196 3.42082 3.50009 3.54708 3.57660 3.80790 4.35611 4.61871 4.66868 4.77261 4.83835 4.86485 4.92795 5.00922 5.06984 5.16678 5.23202 5.26168 5.34860 5.40803 5.58719 5.68629 5.79652 5.97730 6.03547 6.11907 6.17297 6.27445 6.32678 6.38760 6.51373 6.53702 6.63592 6.82943 6.89081 6.98669 7.07865 7.63083 7.79178 8.29680 8.52299 9.63141 10.21807 10.56220 11.56967 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.002584 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.343868 B =10834.371873 C =11806.379715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.141 3.859 4 C 0.007 3.993 5 N -0.413 5.413 6 C 0.019 3.981 7 C 0.586 3.414 8 O -0.525 6.525 9 N -0.589 5.589 10 C 0.056 3.944 11 C -0.125 4.125 12 C -0.114 4.114 13 C -0.106 4.106 14 H 0.073 0.927 15 C 0.161 3.839 16 N -0.733 5.733 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.120 3.880 26 C -0.220 4.220 27 S 0.240 5.760 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.513 10.650 16.029 31.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.061 3.939 4 C -0.270 4.270 5 N -0.131 5.131 6 C -0.116 4.116 7 C 0.370 3.630 8 O -0.401 6.401 9 N -0.321 5.321 10 C -0.067 4.067 11 C -0.164 4.164 12 C -0.152 4.152 13 C -0.126 4.126 14 H 0.091 0.909 15 C 0.033 3.967 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.001 4.001 26 C -0.362 4.362 27 S 0.497 5.503 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.120 0.880 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -25.161 10.394 16.548 31.858 hybrid contribution 1.327 -0.214 -1.363 1.915 sum -23.834 10.180 15.185 30.038 Atomic orbital electron populations 1.22818 0.79836 1.03475 1.00351 1.87985 1.20397 1.26100 1.95516 1.20769 0.84194 0.86256 1.02670 1.26878 1.00976 1.06625 0.92537 1.66558 1.03462 1.14112 1.28950 1.20575 0.89612 1.07559 0.93850 1.17101 0.86369 0.77723 0.81796 1.90882 1.16768 1.49436 1.83060 1.47938 1.13445 1.65741 1.04930 1.23030 0.82908 0.96384 1.04345 1.21726 0.98321 1.00101 0.96215 1.21556 0.95120 1.01239 0.97258 1.21675 0.94894 0.98872 0.97110 0.90898 1.20635 0.87079 0.95919 0.93078 1.42432 1.13013 1.73556 1.08801 1.19258 0.94285 1.33262 0.90242 0.91180 1.24763 0.98213 1.01932 0.96178 1.69691 1.25227 1.48265 1.14672 0.86128 0.82082 0.77505 0.80544 1.20614 1.21912 1.21944 1.21777 0.93204 0.98922 0.86220 1.26714 1.06429 1.06240 0.96779 1.82775 0.94521 1.62628 1.10417 0.93700 0.89040 0.93457 0.89821 0.90710 0.83114 0.92781 0.91383 0.91832 0.91989 0.91799 0.96054 0.96252 0.78119 0.93578 0.91549 0.88004 0.78883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.13 10.69 -35.23 -0.38 -3.51 16 3 C 0.14 0.90 6.51 36.01 0.23 1.14 16 4 C 0.01 0.07 6.97 -13.61 -0.09 -0.03 16 5 N -0.41 -4.95 6.72 -8.51 -0.06 -5.01 16 6 C 0.02 0.26 6.52 -84.53 -0.55 -0.29 16 7 C 0.59 10.36 7.65 -12.59 -0.10 10.26 16 8 O -0.53 -11.20 16.19 5.25 0.08 -11.12 16 9 N -0.59 -9.79 2.98 -174.35 -0.52 -10.31 16 10 C 0.06 0.75 6.24 -3.93 -0.02 0.72 16 11 C -0.13 -1.58 6.07 -26.83 -0.16 -1.74 16 12 C -0.11 -1.60 5.17 -26.69 -0.14 -1.74 16 13 C -0.11 -1.91 2.37 -90.50 -0.21 -2.12 16 14 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 15 C 0.16 3.44 5.66 -4.04 -0.02 3.41 16 16 N -0.73 -19.74 5.38 -59.91 -0.32 -20.06 16 17 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 18 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -29.70 13.06 55.49 0.72 -28.98 16 21 Si 0.91 23.35 29.55 -169.99 -5.02 18.33 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 C 0.12 2.25 5.49 -3.71 -0.02 2.23 16 26 C -0.22 -2.48 10.62 29.65 0.31 -2.16 16 27 S 0.24 1.83 22.92 -107.50 -2.46 -0.63 16 28 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.15 1.90 3.56 -90.14 -0.32 1.58 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.38 11.07 6.89 -40.82 -0.28 10.78 16 42 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.10 2.30 6.27 -51.93 -0.33 1.97 16 45 H 0.19 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -36.33 379.46 -8.96 -45.29 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.81 Total: 7.05 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 0.09 Total: 3.22 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.17 Total: -64.36 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.29 Total: -14.63 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.46 Total: -0.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.33 -8.96 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566915409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.669 kcal (2) G-P(sol) polarization free energy of solvation -36.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds