Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00036 * 2 1 4 4 C 1.50704 * 109.47158 * 179.97438 * 3 2 1 5 5 N 1.28649 * 124.72171 * 89.72476 * 4 3 2 6 6 C 1.33556 * 115.76572 * 179.78674 * 5 4 3 7 7 C 1.47268 * 123.14002 * 180.23490 * 6 5 4 8 8 O 1.21632 * 119.99768 * 186.49263 * 7 6 5 9 9 N 1.34772 * 120.00011 * 6.48976 * 7 6 5 10 10 C 1.46931 * 120.62994 * 7.89270 * 9 7 6 11 11 C 1.52762 * 109.00899 * 233.58451 * 10 9 7 12 12 C 1.53047 * 109.38325 * 305.59018 * 11 10 9 13 13 C 1.53041 * 109.53687 * 61.23891 * 12 11 10 14 14 H 1.08995 * 109.49842 * 58.58720 * 13 12 11 15 15 C 1.53000 * 109.52405 * 178.66916 * 13 12 11 16 16 N 1.46494 * 109.47448 * 184.85555 * 15 13 12 17 17 C 1.36937 * 120.00476 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99581 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00391 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99931 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00181 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46944 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47137 * 120.00039 * 21 19 17 24 24 H 1.48495 * 109.47395 * 239.99950 * 21 19 17 25 25 C 1.46928 * 120.63001 * 188.17258 * 9 7 6 26 26 C 1.35205 * 113.71702 * 0.49620 * 6 5 4 27 27 S 1.70771 * 124.72052 * 270.02328 * 4 3 2 28 28 H 1.08996 * 109.46819 * 300.00039 * 1 2 3 29 29 H 1.08996 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46655 * 59.99871 * 1 2 3 31 31 H 1.09002 * 109.47499 * 299.99785 * 3 2 1 32 32 H 1.09006 * 109.47483 * 59.99859 * 3 2 1 33 33 H 1.08993 * 109.58360 * 353.41532 * 10 9 7 34 34 H 1.09001 * 109.58188 * 113.84356 * 10 9 7 35 35 H 1.08999 * 109.56656 * 185.55487 * 11 10 9 36 36 H 1.08994 * 109.38663 * 65.51245 * 11 10 9 37 37 H 1.09003 * 109.45860 * 301.22256 * 12 11 10 38 38 H 1.08995 * 109.44843 * 181.25109 * 12 11 10 39 39 H 1.08998 * 109.47316 * 304.85774 * 15 13 12 40 40 H 1.09001 * 109.46972 * 64.85219 * 15 13 12 41 41 H 0.96999 * 119.99782 * 359.97438 * 16 15 13 42 42 H 0.96996 * 119.99757 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.58833 * 246.15107 * 25 9 7 44 44 H 1.08998 * 109.58551 * 6.44298 * 25 9 7 45 45 H 1.08000 * 125.58558 * 179.76132 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2431 1.1233 -1.0564 6 6 5.5586 1.0246 -0.8480 7 6 6.5432 0.9469 -1.9404 8 8 7.7152 0.7398 -1.6891 9 7 6.1458 1.1054 -3.2184 10 6 4.7724 1.5255 -3.5286 11 6 4.1552 0.5267 -4.5058 12 6 5.0623 0.3877 -5.7307 13 6 6.4311 -0.1415 -5.2964 14 1 6.3082 -1.1038 -4.7997 15 6 7.3268 -0.3117 -6.5251 16 7 8.5946 -0.9263 -6.1239 17 6 9.5609 -1.1772 -7.0613 18 1 9.3881 -0.9223 -8.0964 19 6 10.7624 -1.7591 -6.6810 20 7 10.9727 -2.0702 -5.4195 21 14 12.0802 -2.1019 -7.9598 22 1 11.6005 -1.6628 -9.2949 23 1 13.3161 -1.3572 -7.6089 24 1 12.3718 -3.5576 -7.9922 25 6 7.0758 0.8553 -4.3280 26 6 5.9015 0.9970 0.4596 27 16 4.4816 1.1093 1.4047 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 -0.8899 31 1 1.6887 1.8463 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 4.1823 1.5506 -2.6126 34 1 4.7874 2.5160 -3.9835 35 1 3.1732 0.8814 -4.8188 36 1 4.0534 -0.4421 -4.0169 37 1 5.1834 1.3615 -6.2053 38 1 4.6120 -0.3079 -6.4387 39 1 6.8274 -0.9511 -7.2531 40 1 7.5209 0.6637 -6.9712 41 1 8.7499 -1.1550 -5.1942 42 1 11.8125 -2.4765 -5.1537 43 1 7.2822 1.7899 -4.8495 44 1 8.0057 0.4406 -3.9390 45 1 6.9076 0.9175 0.8439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566915409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = -33.018688 kcal Electronic energy + Delta-G solvation = -27323.605491 eV Core-core repulsion = 23468.016779 eV Total energy + Delta-G solvation = -3855.588712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.01836 -40.28364 -38.94220 -38.56328 -36.62839 -34.46225 -33.11928 -32.69981 -31.50975 -29.23465 -27.99565 -26.93472 -26.78951 -25.16147 -24.75215 -22.77810 -22.15243 -21.23436 -20.57846 -19.46822 -19.10296 -17.67580 -17.53190 -17.23273 -16.80539 -16.70105 -16.53485 -16.41009 -15.90884 -15.44801 -15.37931 -15.17075 -15.12593 -14.83798 -14.30526 -14.19975 -13.98275 -13.76291 -13.58910 -13.14286 -13.09721 -13.02476 -12.87604 -12.69999 -12.31106 -12.17360 -12.12020 -11.97262 -11.91220 -11.68517 -11.35800 -11.32901 -10.99186 -10.82575 -10.67544 -10.15708 -10.08110 -9.62471 -9.03823 -7.96184 -5.27273 -0.64424 0.13686 0.46922 0.68143 1.43813 1.46510 1.56670 1.92877 2.12400 2.53990 2.61121 3.15247 3.36617 3.58760 3.71175 3.84556 3.91279 3.96438 4.11006 4.16409 4.17853 4.22643 4.33696 4.45323 4.47890 4.56177 4.59680 4.67292 4.71781 4.74278 4.80650 4.90386 4.97401 5.00046 5.08964 5.16392 5.24262 5.34096 5.45390 5.48572 5.70254 6.13400 6.18868 6.24252 6.42263 6.98594 7.29312 8.04868 8.27976 9.27767 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.002584 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.343868 B =10834.371873 C =11806.379715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.137 3.863 4 C -0.002 4.002 5 N -0.432 5.432 6 C -0.008 4.008 7 C 0.575 3.425 8 O -0.581 6.581 9 N -0.589 5.589 10 C 0.051 3.949 11 C -0.117 4.117 12 C -0.106 4.106 13 C -0.093 4.093 14 H 0.048 0.952 15 C 0.160 3.840 16 N -0.749 5.749 17 C -0.245 4.245 18 H 0.081 0.919 19 C -0.082 4.082 20 N -0.974 5.974 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.294 1.294 24 H -0.292 1.292 25 C 0.127 3.873 26 C -0.238 4.238 27 S 0.342 5.658 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.166 0.834 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.029 0.971 40 H 0.028 0.972 41 H 0.370 0.630 42 H 0.250 0.750 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.890 11.955 16.161 35.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.058 3.942 4 C -0.279 4.279 5 N -0.149 5.149 6 C -0.143 4.143 7 C 0.361 3.639 8 O -0.462 6.462 9 N -0.319 5.319 10 C -0.071 4.071 11 C -0.155 4.155 12 C -0.144 4.144 13 C -0.113 4.113 14 H 0.066 0.934 15 C 0.033 3.967 16 N -0.392 5.392 17 C -0.377 4.377 18 H 0.099 0.901 19 C -0.274 4.274 20 N -0.624 5.624 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.221 1.221 24 H -0.219 1.219 25 C 0.004 3.996 26 C -0.381 4.381 27 S 0.600 5.400 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.182 0.818 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.201 0.799 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -28.635 11.731 16.648 35.139 hybrid contribution 2.238 -0.588 -1.277 2.643 sum -26.397 11.143 15.371 32.515 Atomic orbital electron populations 1.22986 0.78132 1.04038 1.01764 1.87928 1.22313 1.27136 1.95833 1.21047 0.82038 0.86123 1.04984 1.27490 1.02542 1.04975 0.92915 1.66380 1.02441 1.15574 1.30537 1.20072 0.90070 1.10947 0.93227 1.17750 0.86573 0.76633 0.82904 1.90831 1.19273 1.52070 1.84021 1.48061 1.14446 1.65228 1.04196 1.23362 0.80939 0.97171 1.05578 1.21699 0.99561 0.99283 0.94975 1.21539 0.92487 1.02049 0.98336 1.21528 0.96735 0.97718 0.95284 0.93359 1.20826 0.85491 0.95680 0.94683 1.42695 1.14708 1.73949 1.07815 1.19728 0.94827 1.32081 0.91018 0.90128 1.25714 1.00861 1.02541 0.98301 1.69888 1.25681 1.49831 1.17039 0.84976 0.78626 0.76940 0.78614 1.18525 1.22090 1.21945 1.21466 0.92154 0.98907 0.87033 1.26961 1.08572 1.05411 0.97116 1.82407 0.90604 1.59668 1.07340 0.91707 0.89025 0.92598 0.88694 0.87229 0.81839 0.91263 0.87624 0.93381 0.90400 0.90515 0.95272 0.95377 0.79879 0.94097 0.91023 0.92955 0.79199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -5.64 10.69 -148.98 -1.59 -7.23 16 3 C 0.14 1.29 6.51 71.24 0.46 1.75 16 4 C 0.00 -0.03 6.97 88.58 0.62 0.59 16 5 N -0.43 -9.90 6.72 -180.83 -1.22 -11.11 16 6 C -0.01 -0.24 6.52 40.56 0.26 0.02 16 7 C 0.57 21.76 7.65 86.62 0.66 22.42 16 8 O -0.58 -27.26 16.19 -4.13 -0.07 -27.33 16 9 N -0.59 -20.42 2.98 -823.77 -2.45 -22.88 16 10 C 0.05 1.29 6.24 86.22 0.54 1.83 16 11 C -0.12 -2.70 6.07 30.53 0.19 -2.52 16 12 C -0.11 -2.81 5.17 30.62 0.16 -2.65 16 13 C -0.09 -3.44 2.37 -10.71 -0.03 -3.46 16 14 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 15 C 0.16 6.92 5.66 86.38 0.49 7.41 16 16 N -0.75 -41.92 5.38 -343.47 -1.85 -43.77 16 17 C -0.24 -14.64 9.99 84.03 0.84 -13.80 16 18 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 19 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 20 N -0.97 -64.75 13.06 21.65 0.28 -64.47 16 21 Si 0.98 48.91 29.55 68.60 2.03 50.94 16 22 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 24 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 25 C 0.13 5.04 5.49 86.36 0.47 5.52 16 26 C -0.24 -5.37 10.62 67.12 0.71 -4.66 16 27 S 0.34 4.35 22.92 -56.49 -1.29 3.06 16 28 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.17 3.89 3.56 -77.83 -0.28 3.62 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.37 22.70 6.89 -92.71 -0.64 22.06 16 42 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 43 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.05 2.60 6.27 -2.39 -0.01 2.58 16 45 H 0.19 4.26 8.04 -2.91 -0.02 4.24 16 Total: -1.00 -84.34 379.46 1.04 -83.30 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.10 Total: 30.24 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 7.09 Total: 9.26 kcal Atomic # 7 Polarization: -137.00 SS G_CDS: -5.23 Total: -142.23 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.66 Total: -34.56 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.29 Total: 3.06 kcal Total: -84.34 1.04 -83.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566915409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.285 kcal (2) G-P(sol) polarization free energy of solvation -84.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds