Wall clock time and date at job start Sat Apr 11 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00471 * 2 1 4 4 C 1.50693 * 109.47338 * 179.97438 * 3 2 1 5 5 N 1.29429 * 124.80460 * 89.68993 * 4 3 2 6 6 C 1.30941 * 117.36372 * 179.83522 * 5 4 3 7 7 C 1.35662 * 114.19002 * 0.45071 * 6 5 4 8 8 C 1.46687 * 126.12884 * 179.74592 * 7 6 5 9 9 O 1.21687 * 120.00158 * 316.07718 * 8 7 6 10 10 N 1.34775 * 119.99738 * 136.08168 * 8 7 6 11 11 C 1.46929 * 120.63354 * 3.36160 * 10 8 7 12 12 C 1.52758 * 109.00948 * 233.58539 * 11 10 8 13 13 C 1.53045 * 109.38482 * 305.58857 * 12 11 10 14 14 C 1.53037 * 109.53528 * 61.24150 * 13 12 11 15 15 H 1.08996 * 109.49939 * 58.58745 * 14 13 12 16 16 C 1.53006 * 109.52205 * 178.66954 * 14 13 12 17 17 N 1.46496 * 109.47070 * 184.85538 * 16 14 13 18 18 C 1.36933 * 119.99949 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00322 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00186 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00129 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.46907 * 90.00500 * 22 20 18 24 24 H 1.48494 * 109.47551 * 209.99944 * 22 20 18 25 25 H 1.48505 * 109.47228 * 330.00798 * 22 20 18 26 26 C 1.46935 * 120.62984 * 183.64886 * 10 8 7 27 27 S 1.70951 * 124.80288 * 269.99658 * 4 3 2 28 28 H 1.08999 * 109.47383 * 300.00989 * 1 2 3 29 29 H 1.08995 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46500 * 60.00197 * 1 2 3 31 31 H 1.09001 * 109.46336 * 299.99823 * 3 2 1 32 32 H 1.08999 * 109.46881 * 59.99253 * 3 2 1 33 33 H 1.08007 * 122.90706 * 180.21942 * 6 5 4 34 34 H 1.08999 * 109.58336 * 353.42043 * 11 10 8 35 35 H 1.08999 * 109.57972 * 113.84825 * 11 10 8 36 36 H 1.09004 * 109.56528 * 185.55319 * 12 11 10 37 37 H 1.09001 * 109.35884 * 65.50109 * 12 11 10 38 38 H 1.08996 * 109.45973 * 301.22031 * 13 12 11 39 39 H 1.09002 * 109.44460 * 181.25450 * 13 12 11 40 40 H 1.09003 * 109.46837 * 304.85188 * 16 14 13 41 41 H 1.08997 * 109.47094 * 64.85142 * 16 14 13 42 42 H 0.97005 * 120.00285 * 359.97438 * 17 16 14 43 43 H 0.96999 * 120.00315 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.58105 * 246.15314 * 26 10 8 45 45 H 1.08999 * 109.58178 * 6.43297 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2490 1.1221 -1.0618 6 6 5.5435 1.0238 -0.8917 7 6 5.9328 0.9935 0.4075 8 6 7.3120 0.8833 0.8948 9 8 8.0770 0.0883 0.3815 10 7 7.7318 1.6626 1.9112 11 6 6.8005 2.5743 2.5896 12 6 7.3888 3.9841 2.5801 13 6 8.7930 3.9526 3.1880 14 6 9.6944 3.0456 2.3472 15 1 9.7288 3.4157 1.3226 16 6 11.1066 3.0405 2.9361 17 7 11.9955 2.2661 2.0664 18 6 13.3175 2.1220 2.3927 19 1 13.7051 2.5796 3.2909 20 6 14.1597 1.3878 1.5689 21 7 15.4305 1.2489 1.8827 22 14 13.4894 0.5956 0.0157 23 1 13.6160 1.5456 -1.1188 24 1 14.2602 -0.6378 -0.2833 25 1 12.0589 0.2496 0.2142 26 6 9.1310 1.6211 2.3577 27 16 4.4846 1.1096 1.4048 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 -0.8900 31 1 1.6887 1.8462 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 6.2409 0.9677 -1.7145 34 1 5.8442 2.5754 2.0666 35 1 6.6558 2.2487 3.6197 36 1 6.7536 4.6486 3.1659 37 1 7.4449 4.3453 1.5533 38 1 8.7393 3.5679 4.2064 39 1 9.2050 4.9617 3.2022 40 1 11.4728 4.0644 3.0106 41 1 11.0850 2.5892 3.9280 42 1 11.6475 1.8553 1.2594 43 1 16.0190 0.7361 1.3069 44 1 9.1800 1.2162 3.3685 45 1 9.7112 0.9914 1.6833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566916478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:50 Heat of formation + Delta-G solvation = -39.624916 kcal Electronic energy + Delta-G solvation = -26990.630427 eV Core-core repulsion = 23134.755247 eV Total energy + Delta-G solvation = -3855.875180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68095 -40.71719 -39.00925 -38.68963 -36.82908 -34.62876 -33.34818 -32.79250 -31.84500 -29.77977 -27.59457 -27.17741 -26.52710 -24.99749 -24.60677 -22.91169 -22.62835 -21.23546 -20.03293 -19.78861 -19.48099 -18.06737 -17.69522 -17.48752 -16.80182 -16.69085 -16.49148 -16.30266 -15.96696 -15.76868 -15.50986 -15.32788 -15.16007 -14.91153 -14.42969 -14.24626 -14.14406 -13.89267 -13.71702 -13.39912 -13.27007 -13.07893 -12.83176 -12.79998 -12.39065 -12.29154 -12.12931 -11.96757 -11.90033 -11.69042 -11.44618 -11.37504 -11.03740 -10.92304 -10.72024 -10.52825 -10.06733 -9.82529 -9.32010 -8.07184 -5.38701 -0.94752 -0.12032 0.33897 1.22029 1.31842 1.35707 1.41628 1.59710 1.88640 2.42184 2.61795 3.19406 3.24898 3.33770 3.51967 3.73426 3.77547 3.82660 3.98121 4.01234 4.10118 4.18984 4.21894 4.33391 4.36774 4.50449 4.53135 4.60166 4.68510 4.72965 4.77853 4.83446 4.87279 4.90645 5.01804 5.06489 5.17019 5.29784 5.33834 5.46445 5.73082 6.04726 6.10680 6.17893 6.43354 6.80599 7.03961 7.81731 7.97594 9.14202 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.002611 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.279058 B =10722.178394 C =11739.908896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.134 3.866 4 C 0.030 3.970 5 N -0.481 5.481 6 C 0.103 3.897 7 C -0.307 4.307 8 C 0.586 3.414 9 O -0.572 6.572 10 N -0.597 5.597 11 C 0.087 3.913 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.100 4.100 15 H 0.061 0.939 16 C 0.160 3.840 17 N -0.763 5.763 18 C -0.228 4.228 19 H 0.066 0.934 20 C -0.058 4.058 21 N -0.979 5.979 22 Si 0.942 3.058 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.122 3.878 27 S 0.283 5.717 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.181 0.819 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.361 0.639 43 H 0.258 0.742 44 H 0.084 0.916 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.264 6.326 2.287 38.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.054 3.946 4 C -0.244 4.244 5 N -0.197 5.197 6 C -0.054 4.054 7 C -0.432 4.432 8 C 0.373 3.627 9 O -0.453 6.453 10 N -0.328 5.328 11 C -0.035 4.035 12 C -0.163 4.163 13 C -0.145 4.145 14 C -0.119 4.119 15 H 0.079 0.921 16 C 0.034 3.966 17 N -0.408 5.408 18 C -0.359 4.359 19 H 0.084 0.916 20 C -0.249 4.249 21 N -0.630 5.630 22 Si 0.771 3.229 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.192 1.192 26 C 0.000 4.000 27 S 0.541 5.459 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.198 0.802 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.194 0.806 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -38.143 5.817 2.776 38.684 hybrid contribution 1.255 -0.847 -2.169 2.645 sum -36.889 4.970 0.607 37.227 Atomic orbital electron populations 1.23019 0.77896 1.04246 1.01839 1.87920 1.22581 1.26996 1.95850 1.21102 0.82284 0.86239 1.04946 1.27701 1.02245 1.02022 0.92450 1.66213 1.04490 1.16384 1.32656 1.22123 0.91195 0.96706 0.95417 1.25658 0.98701 1.19586 0.99223 1.17215 0.85422 0.80476 0.79600 1.90872 1.56622 1.38667 1.59106 1.48134 1.11393 1.40183 1.33082 1.22411 0.92079 0.90017 0.98998 1.21829 0.96612 0.95506 1.02336 1.21521 0.94087 0.99677 0.99176 1.21632 0.94584 0.95023 1.00681 0.92070 1.20853 0.87915 0.94664 0.93163 1.42878 1.06657 1.63598 1.27691 1.19075 0.85150 1.25613 1.06052 0.91614 1.25346 0.95755 1.01904 1.01937 1.69847 1.05012 1.47351 1.40758 0.85600 0.78044 0.78185 0.81068 1.20441 1.22009 1.19232 1.21617 0.80062 0.97834 1.00493 1.83523 0.92194 1.62014 1.08166 0.91576 0.88708 0.92612 0.88846 0.87075 0.80170 0.88952 0.87947 0.86465 0.92245 0.89823 0.90054 0.94573 0.94718 0.80613 0.93324 0.89773 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.41 -5.88 10.69 -148.98 -1.59 -7.47 16 3 C 0.13 1.38 6.51 71.23 0.46 1.84 16 4 C 0.03 0.50 7.01 88.46 0.62 1.12 16 5 N -0.48 -10.89 10.51 -190.31 -2.00 -12.89 16 6 C 0.10 2.53 11.30 84.23 0.95 3.48 16 7 C -0.31 -7.37 5.53 23.88 0.13 -7.24 16 8 C 0.59 18.01 7.57 86.45 0.65 18.66 16 9 O -0.57 -23.55 16.51 -4.31 -0.07 -23.63 16 10 N -0.60 -15.25 2.98 -824.43 -2.46 -17.70 16 11 C 0.09 1.30 5.88 86.22 0.51 1.81 16 12 C -0.12 -1.65 6.06 30.53 0.19 -1.46 16 13 C -0.11 -1.91 5.17 30.62 0.16 -1.75 16 14 C -0.10 -2.82 2.37 -10.72 -0.03 -2.84 16 15 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 16 C 0.16 5.89 5.66 86.38 0.49 6.37 16 17 N -0.76 -37.05 5.18 -343.45 -1.78 -38.83 16 18 C -0.23 -13.36 10.47 84.04 0.88 -12.48 16 19 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 20 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 21 N -0.98 -64.43 13.97 21.65 0.30 -64.13 16 22 Si 0.94 49.48 27.73 68.60 1.90 51.39 16 23 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 25 H -0.27 -13.63 6.52 99.48 0.65 -12.98 16 26 C 0.12 3.75 5.51 86.36 0.48 4.22 16 27 S 0.28 4.15 19.98 -56.49 -1.13 3.02 16 28 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 34 H 0.09 1.15 3.96 -16.38 -0.06 1.09 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.36 17.69 4.76 -92.70 -0.44 17.25 16 43 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.06 2.26 6.23 -2.39 -0.01 2.25 16 Total: -1.00 -83.70 377.20 0.84 -82.86 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.45 Total: 17.30 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 7.21 Total: 10.07 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -5.93 Total: -133.55 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.66 Total: -31.09 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.90 Total: 51.39 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.13 Total: 3.02 kcal Total: -83.70 0.84 -82.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566916478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.235 kcal (2) G-P(sol) polarization free energy of solvation -83.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds