Wall clock time and date at job start Sat Apr 11 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00603 * 2 1 4 4 C 1.50690 * 109.47322 * 180.02562 * 3 2 1 5 5 N 1.28651 * 124.71913 * 90.28601 * 4 3 2 6 6 C 1.33558 * 115.76789 * 180.15086 * 5 4 3 7 7 C 1.47271 * 123.14128 * 179.82884 * 6 5 4 8 8 O 1.21634 * 119.99879 * 179.71143 * 7 6 5 9 9 N 1.34776 * 119.99716 * 359.70757 * 7 6 5 10 10 C 1.46508 * 119.99573 * 174.90330 * 9 7 6 11 11 C 1.52998 * 110.01409 * 65.17378 * 10 9 7 12 12 N 1.46496 * 109.47537 * 55.17686 * 11 10 9 13 13 C 1.36931 * 120.00385 * 174.90623 * 12 11 10 14 14 H 1.08002 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.38808 * 120.00184 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00244 * 359.71954 * 15 13 12 17 17 Si 1.86808 * 120.00026 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46933 * 89.99913 * 17 15 13 19 19 H 1.48504 * 109.46968 * 209.99746 * 17 15 13 20 20 H 1.48500 * 109.47122 * 329.99963 * 17 15 13 21 21 C 1.54260 * 110.07059 * 186.59087 * 10 9 7 22 22 C 1.54890 * 104.19760 * 95.69872 * 21 10 9 23 23 C 1.54888 * 102.74773 * 37.94100 * 22 21 10 24 24 C 1.53874 * 110.03210 * 303.78295 * 10 9 7 25 25 C 1.35200 * 113.71866 * 359.56670 * 6 5 4 26 26 S 1.70772 * 124.72501 * 269.98010 * 4 3 2 27 27 H 1.09000 * 109.47019 * 59.99350 * 1 2 3 28 28 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46663 * 299.99844 * 1 2 3 30 30 H 1.09002 * 109.46490 * 60.00203 * 3 2 1 31 31 H 1.08997 * 109.46867 * 300.01010 * 3 2 1 32 32 H 0.96993 * 120.00337 * 354.90867 * 9 7 6 33 33 H 1.09006 * 109.47162 * 295.16986 * 11 10 9 34 34 H 1.08999 * 109.46710 * 175.17635 * 11 10 9 35 35 H 0.96998 * 119.99722 * 354.90198 * 12 11 10 36 36 H 0.96998 * 120.00593 * 179.97438 * 16 15 13 37 37 H 1.09005 * 110.48394 * 214.37631 * 21 10 9 38 38 H 1.09004 * 110.48840 * 337.01790 * 21 10 9 39 39 H 1.09004 * 110.75515 * 279.62881 * 22 21 10 40 40 H 1.09002 * 110.75659 * 156.25302 * 22 21 10 41 41 H 1.08998 * 110.48761 * 203.38175 * 23 22 21 42 42 H 1.08996 * 110.48995 * 80.74008 * 23 22 21 43 43 H 1.08997 * 110.03482 * 359.94783 * 24 10 9 44 44 H 1.08996 * 110.03163 * 121.38226 * 24 10 9 45 45 H 1.07998 * 125.59116 * 180.23102 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 7 4.2430 1.1339 -1.0584 6 6 5.5579 1.0254 -0.8512 7 6 6.5417 0.9488 -1.9444 8 8 7.7275 0.8561 -1.6901 9 7 6.1279 0.9815 -3.2267 10 6 7.1106 1.0181 -4.3127 11 6 7.9183 -0.2812 -4.3321 12 7 7.0047 -1.4228 -4.4230 13 6 7.5043 -2.6903 -4.5605 14 1 8.5719 -2.8484 -4.6024 15 6 6.6387 -3.7721 -4.6461 16 7 5.3378 -3.5801 -4.5895 17 14 7.3202 -5.5011 -4.8344 18 1 7.5356 -6.0973 -3.4915 19 1 6.3548 -6.3334 -5.5965 20 1 8.6120 -5.4472 -5.5650 21 6 6.3971 1.2171 -5.6658 22 6 6.4703 2.7444 -5.9129 23 6 7.8782 3.1096 -5.3804 24 6 8.0523 2.2214 -4.1311 25 6 5.9020 0.9980 0.4560 26 16 4.4829 1.1097 1.4025 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 5.1797 0.9808 -3.4305 33 1 8.5056 -0.3577 -3.4170 34 1 8.5862 -0.2809 -5.1934 35 1 6.0459 -1.2809 -4.3857 36 1 4.7328 -4.3359 -4.6497 37 1 6.9197 0.6773 -6.4556 38 1 5.3592 0.8903 -5.6015 39 1 5.6967 3.2646 -5.3480 40 1 6.3898 2.9679 -6.9767 41 1 7.9211 4.1641 -5.1077 42 1 8.6399 2.8757 -6.1240 43 1 7.7777 2.7787 -3.2356 44 1 9.0847 1.8797 -4.0569 45 1 6.9085 0.9187 0.8395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568011677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:57 Heat of formation + Delta-G solvation = -23.987522 kcal Electronic energy + Delta-G solvation = -27814.543051 eV Core-core repulsion = 23959.345959 eV Total energy + Delta-G solvation = -3855.197092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.52750 -39.34372 -38.00349 -37.14415 -34.21529 -33.04819 -31.68497 -30.86952 -28.57632 -28.28004 -28.07743 -26.23580 -24.93599 -24.23015 -22.11239 -21.58066 -20.57637 -19.81131 -19.11977 -18.35905 -16.98979 -16.81896 -16.50352 -16.03206 -15.87657 -15.62936 -15.05453 -14.77437 -14.39977 -14.34379 -13.94266 -13.69759 -13.51617 -13.10547 -12.89947 -12.84894 -12.60231 -12.45036 -12.03848 -11.78032 -11.67450 -11.48802 -11.09636 -10.89146 -10.81610 -10.75522 -10.62211 -10.39020 -10.34843 -10.05539 -9.96009 -9.91735 -9.70655 -9.62307 -9.52307 -8.99952 -8.71948 -8.44360 -6.75172 -5.64039 -2.90709 0.45569 1.14655 1.54260 2.02657 3.37506 3.50984 3.55814 3.57358 3.65582 3.73953 4.13228 4.63949 4.67395 4.78995 4.91846 4.95765 5.05375 5.08684 5.11656 5.18596 5.23229 5.33090 5.48416 5.61562 5.66058 5.72839 5.74312 5.86574 5.89258 5.97884 6.04562 6.10987 6.28638 6.36706 6.48046 6.57185 6.61700 6.67994 6.80037 6.98750 7.20541 7.40213 7.81676 8.01834 8.54849 8.64170 9.66050 10.25601 10.61378 11.58948 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007683 B = 0.004273 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3643.733386 B = 6550.584225 C = 8433.172659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.143 3.857 4 C 0.014 3.986 5 N -0.418 5.418 6 C 0.020 3.980 7 C 0.599 3.401 8 O -0.529 6.529 9 N -0.690 5.690 10 C 0.168 3.832 11 C 0.145 3.855 12 N -0.726 5.726 13 C -0.231 4.231 14 H 0.068 0.932 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.904 3.096 18 H -0.292 1.292 19 H -0.293 1.293 20 H -0.283 1.283 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.222 4.222 26 S 0.220 5.780 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.405 0.595 33 H 0.037 0.963 34 H 0.027 0.973 35 H 0.382 0.618 36 H 0.253 0.747 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.689 17.495 9.709 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C 0.063 3.937 4 C -0.265 4.265 5 N -0.135 5.135 6 C -0.116 4.116 7 C 0.382 3.618 8 O -0.406 6.406 9 N -0.340 5.340 10 C 0.082 3.918 11 C 0.017 3.983 12 N -0.370 5.370 13 C -0.363 4.363 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.583 5.583 17 Si 0.736 3.264 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.156 4.156 25 C -0.364 4.364 26 S 0.476 5.524 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.241 0.759 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.216 0.784 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.076 17.176 10.367 21.273 hybrid contribution -0.011 -1.068 -0.847 1.363 sum -7.087 16.108 9.520 20.008 Atomic orbital electron populations 1.22804 0.80056 1.03449 1.00105 1.88024 1.20222 1.26065 1.95452 1.20733 0.84402 0.86238 1.02321 1.26539 1.00641 1.07293 0.92024 1.66856 1.03267 1.12199 1.31173 1.20592 0.89874 1.07234 0.93878 1.16859 0.86496 0.76590 0.81889 1.90783 1.16066 1.49942 1.83771 1.45846 1.10481 1.73123 1.04528 1.21312 0.88790 0.96034 0.85646 1.21159 0.92690 0.85547 0.98895 1.42222 1.04943 1.01394 1.88482 1.19231 0.91911 0.83976 1.41179 0.91391 1.24687 0.95313 0.97654 1.03455 1.69661 1.00829 1.29763 1.58053 0.86222 0.77613 0.85131 0.77465 1.21930 1.21897 1.20843 1.22581 1.01256 0.95570 0.96077 1.22534 0.97012 0.96222 1.00489 1.22381 0.97291 0.98943 0.97527 1.22414 1.00116 0.95264 0.97767 1.26650 1.06013 1.06826 0.96913 1.82637 0.94948 1.63562 1.11212 0.93549 0.89055 0.93896 0.90975 0.89965 0.75875 0.94509 0.95554 0.78383 0.93744 0.89526 0.90906 0.91819 0.91642 0.92108 0.91544 0.91590 0.90827 0.79199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.68 10.69 -35.23 -0.38 -5.05 16 3 C 0.14 1.44 6.51 36.00 0.23 1.68 16 4 C 0.01 0.19 6.97 -13.62 -0.09 0.09 16 5 N -0.42 -6.67 10.13 -8.51 -0.09 -6.76 16 6 C 0.02 0.33 6.70 -84.53 -0.57 -0.23 16 7 C 0.60 11.55 6.84 -12.59 -0.09 11.46 16 8 O -0.53 -11.29 13.98 5.25 0.07 -11.21 16 9 N -0.69 -12.56 4.49 -47.68 -0.21 -12.78 16 10 C 0.17 3.00 0.57 -130.70 -0.07 2.93 16 11 C 0.15 3.26 4.64 -4.04 -0.02 3.24 16 12 N -0.73 -19.47 5.27 -59.91 -0.32 -19.78 16 13 C -0.23 -6.87 9.99 -15.06 -0.15 -7.02 16 14 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 15 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 16 N -0.93 -29.38 13.06 55.49 0.72 -28.66 16 17 Si 0.90 23.55 29.55 -169.99 -5.02 18.52 16 18 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 19 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 20 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 21 C -0.12 -1.86 5.74 -25.07 -0.14 -2.00 16 22 C -0.12 -1.57 6.91 -24.74 -0.17 -1.74 16 23 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 24 C -0.12 -1.82 5.22 -25.61 -0.13 -1.95 16 25 C -0.22 -3.14 10.62 29.65 0.31 -2.82 16 26 S 0.22 2.37 22.92 -107.50 -2.46 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.41 7.12 7.76 -40.82 -0.32 6.80 16 33 H 0.04 0.92 6.55 -51.93 -0.34 0.58 16 34 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.38 10.67 7.19 -40.82 -0.29 10.37 16 36 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.09 1.47 7.79 -51.93 -0.40 1.07 16 38 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.06 6.99 -51.93 -0.36 0.70 16 44 H 0.07 1.19 7.67 -51.93 -0.40 0.79 16 45 H 0.19 2.46 8.03 -52.49 -0.42 2.04 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -35.91 382.60 -8.67 -44.58 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.71 Total: 12.75 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.05 Total: 2.71 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: 0.11 Total: -67.97 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.30 Total: -16.27 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.52 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.46 Total: -0.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.91 -8.67 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568011677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.591 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds