Wall clock time and date at job start Sat Apr 11 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00603 * 2 1 4 4 C 1.50690 * 109.47322 * 180.02562 * 3 2 1 5 5 N 1.28651 * 124.71913 * 90.28601 * 4 3 2 6 6 C 1.33558 * 115.76789 * 180.15086 * 5 4 3 7 7 C 1.47271 * 123.14128 * 179.82884 * 6 5 4 8 8 O 1.21634 * 119.99879 * 179.71143 * 7 6 5 9 9 N 1.34776 * 119.99716 * 359.70757 * 7 6 5 10 10 C 1.46508 * 119.99573 * 174.90330 * 9 7 6 11 11 C 1.52998 * 110.01409 * 65.17378 * 10 9 7 12 12 N 1.46496 * 109.47537 * 55.17686 * 11 10 9 13 13 C 1.36931 * 120.00385 * 174.90623 * 12 11 10 14 14 H 1.08002 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.38808 * 120.00184 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00244 * 359.71954 * 15 13 12 17 17 Si 1.86808 * 120.00026 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46933 * 89.99913 * 17 15 13 19 19 H 1.48504 * 109.46968 * 209.99746 * 17 15 13 20 20 H 1.48500 * 109.47122 * 329.99963 * 17 15 13 21 21 C 1.54260 * 110.07059 * 186.59087 * 10 9 7 22 22 C 1.54890 * 104.19760 * 95.69872 * 21 10 9 23 23 C 1.54888 * 102.74773 * 37.94100 * 22 21 10 24 24 C 1.53874 * 110.03210 * 303.78295 * 10 9 7 25 25 C 1.35200 * 113.71866 * 359.56670 * 6 5 4 26 26 S 1.70772 * 124.72501 * 269.98010 * 4 3 2 27 27 H 1.09000 * 109.47019 * 59.99350 * 1 2 3 28 28 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46663 * 299.99844 * 1 2 3 30 30 H 1.09002 * 109.46490 * 60.00203 * 3 2 1 31 31 H 1.08997 * 109.46867 * 300.01010 * 3 2 1 32 32 H 0.96993 * 120.00337 * 354.90867 * 9 7 6 33 33 H 1.09006 * 109.47162 * 295.16986 * 11 10 9 34 34 H 1.08999 * 109.46710 * 175.17635 * 11 10 9 35 35 H 0.96998 * 119.99722 * 354.90198 * 12 11 10 36 36 H 0.96998 * 120.00593 * 179.97438 * 16 15 13 37 37 H 1.09005 * 110.48394 * 214.37631 * 21 10 9 38 38 H 1.09004 * 110.48840 * 337.01790 * 21 10 9 39 39 H 1.09004 * 110.75515 * 279.62881 * 22 21 10 40 40 H 1.09002 * 110.75659 * 156.25302 * 22 21 10 41 41 H 1.08998 * 110.48761 * 203.38175 * 23 22 21 42 42 H 1.08996 * 110.48995 * 80.74008 * 23 22 21 43 43 H 1.08997 * 110.03482 * 359.94783 * 24 10 9 44 44 H 1.08996 * 110.03163 * 121.38226 * 24 10 9 45 45 H 1.07998 * 125.59116 * 180.23102 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 7 4.2430 1.1339 -1.0584 6 6 5.5579 1.0254 -0.8512 7 6 6.5417 0.9488 -1.9444 8 8 7.7275 0.8561 -1.6901 9 7 6.1279 0.9815 -3.2267 10 6 7.1106 1.0181 -4.3127 11 6 7.9183 -0.2812 -4.3321 12 7 7.0047 -1.4228 -4.4230 13 6 7.5043 -2.6903 -4.5605 14 1 8.5719 -2.8484 -4.6024 15 6 6.6387 -3.7721 -4.6461 16 7 5.3378 -3.5801 -4.5895 17 14 7.3202 -5.5011 -4.8344 18 1 7.5356 -6.0973 -3.4915 19 1 6.3548 -6.3334 -5.5965 20 1 8.6120 -5.4472 -5.5650 21 6 6.3971 1.2171 -5.6658 22 6 6.4703 2.7444 -5.9129 23 6 7.8782 3.1096 -5.3804 24 6 8.0523 2.2214 -4.1311 25 6 5.9020 0.9980 0.4560 26 16 4.4829 1.1097 1.4025 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 5.1797 0.9808 -3.4305 33 1 8.5056 -0.3577 -3.4170 34 1 8.5862 -0.2809 -5.1934 35 1 6.0459 -1.2809 -4.3857 36 1 4.7328 -4.3359 -4.6497 37 1 6.9197 0.6773 -6.4556 38 1 5.3592 0.8903 -5.6015 39 1 5.6967 3.2646 -5.3480 40 1 6.3898 2.9679 -6.9767 41 1 7.9211 4.1641 -5.1077 42 1 8.6399 2.8757 -6.1240 43 1 7.7777 2.7787 -3.2356 44 1 9.0847 1.8797 -4.0569 45 1 6.9085 0.9187 0.8395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568011677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:56 Heat of formation + Delta-G solvation = -50.919827 kcal Electronic energy + Delta-G solvation = -27815.710923 eV Core-core repulsion = 23959.345959 eV Total energy + Delta-G solvation = -3856.364964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82272 -40.56592 -38.92352 -38.42966 -36.19171 -34.54756 -33.07805 -32.57526 -29.89146 -29.62254 -29.17675 -27.05748 -26.50207 -25.69798 -24.02004 -22.72048 -21.72626 -20.98338 -20.48908 -19.66032 -19.14770 -17.73372 -17.59742 -17.25865 -16.86863 -16.60301 -16.47254 -16.34821 -15.95178 -15.63057 -15.41632 -15.03867 -14.91286 -14.77824 -14.49636 -14.08473 -13.67829 -13.58721 -13.23046 -13.15032 -13.02328 -12.84006 -12.70688 -12.34841 -12.29263 -12.19776 -12.00329 -11.93599 -11.80965 -11.74402 -11.41738 -11.18830 -10.98619 -10.83411 -10.76395 -10.66421 -10.13545 -9.85693 -8.98449 -7.96287 -5.24220 -0.60394 0.18708 0.50665 0.82840 1.41711 1.44583 1.53015 2.15182 2.34213 2.53487 2.69377 3.21004 3.35961 3.49449 3.69117 3.74870 3.89213 4.05594 4.15882 4.17652 4.19268 4.37959 4.41865 4.49429 4.53167 4.53620 4.61503 4.66070 4.75880 4.79306 4.86198 4.90048 4.91178 5.07391 5.07862 5.17448 5.23525 5.32494 5.44057 5.47906 5.67450 6.11768 6.24555 6.29355 6.61776 7.19308 7.31667 8.06899 8.33982 9.26813 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007683 B = 0.004273 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3643.733386 B = 6550.584225 C = 8433.172659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.140 3.860 4 C -0.006 4.006 5 N -0.448 5.448 6 C -0.015 4.015 7 C 0.590 3.410 8 O -0.562 6.562 9 N -0.687 5.687 10 C 0.168 3.832 11 C 0.148 3.852 12 N -0.732 5.732 13 C -0.247 4.247 14 H 0.067 0.933 15 C -0.072 4.072 16 N -0.966 5.966 17 Si 0.972 3.028 18 H -0.291 1.291 19 H -0.289 1.289 20 H -0.269 1.269 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.238 4.238 26 S 0.325 5.675 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.407 0.593 33 H 0.010 0.990 34 H 0.029 0.971 35 H 0.374 0.626 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.617 18.736 10.471 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C 0.060 3.940 4 C -0.284 4.284 5 N -0.166 5.166 6 C -0.151 4.151 7 C 0.374 3.626 8 O -0.442 6.442 9 N -0.337 5.337 10 C 0.083 3.917 11 C 0.020 3.980 12 N -0.375 5.375 13 C -0.379 4.379 14 H 0.085 0.915 15 C -0.264 4.264 16 N -0.616 5.616 17 Si 0.801 3.199 18 H -0.219 1.219 19 H -0.216 1.216 20 H -0.194 1.194 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.381 4.381 26 S 0.582 5.418 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.243 0.757 33 H 0.028 0.972 34 H 0.047 0.953 35 H 0.207 0.793 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.009 18.447 11.131 22.985 hybrid contribution 0.246 -1.460 -0.943 1.755 sum -7.763 16.987 10.188 21.274 Atomic orbital electron populations 1.22990 0.78142 1.03991 1.01778 1.87953 1.22447 1.27445 1.95803 1.21009 0.82478 0.85906 1.04572 1.27211 1.02302 1.06167 0.92754 1.66835 1.02932 1.13764 1.33063 1.20378 0.90307 1.10415 0.94008 1.17329 0.86750 0.75807 0.82666 1.90741 1.17452 1.51619 1.84344 1.45863 1.10525 1.72718 1.04551 1.21326 0.89080 0.94473 0.86864 1.21212 0.92632 0.86748 0.97376 1.42324 1.05037 1.01858 1.88266 1.19595 0.92076 0.85441 1.40762 0.91459 1.25513 0.95634 1.01605 1.03646 1.69822 1.01977 1.30676 1.59151 0.85158 0.77453 0.79984 0.77283 1.21882 1.21567 1.19402 1.22537 1.00075 0.98415 0.94282 1.22492 0.97282 0.93045 1.02133 1.22372 0.97495 0.99473 0.95897 1.22341 0.98636 0.94651 0.99349 1.26967 1.08246 1.05796 0.97075 1.82188 0.91179 1.60534 1.07877 0.92880 0.89188 0.91179 0.86934 0.89480 0.75696 0.97221 0.95268 0.79315 0.94058 0.90807 0.91814 0.90891 0.89335 0.89732 0.90576 0.92231 0.91990 0.78771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.74 10.69 -148.98 -1.59 -11.33 16 3 C 0.14 2.55 6.51 71.23 0.46 3.01 16 4 C -0.01 -0.14 6.97 88.57 0.62 0.48 16 5 N -0.45 -14.50 10.13 -180.84 -1.83 -16.34 16 6 C -0.02 -0.54 6.70 40.56 0.27 -0.27 16 7 C 0.59 23.92 6.84 86.62 0.59 24.51 16 8 O -0.56 -25.36 13.98 -4.14 -0.06 -25.42 16 9 N -0.69 -26.22 4.49 -422.99 -1.90 -28.12 16 10 C 0.17 6.22 0.57 4.32 0.00 6.22 16 11 C 0.15 6.94 4.64 86.38 0.40 7.34 16 12 N -0.73 -40.80 5.27 -343.46 -1.81 -42.62 16 13 C -0.25 -15.01 9.99 84.03 0.84 -14.17 16 14 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 15 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 16 N -0.97 -62.01 13.06 21.65 0.28 -61.73 16 17 Si 0.97 49.00 29.55 68.60 2.03 51.03 16 18 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 19 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 C -0.12 -3.69 5.74 31.67 0.18 -3.50 16 22 C -0.11 -2.60 6.91 31.88 0.22 -2.38 16 23 C -0.11 -2.66 6.83 31.67 0.22 -2.44 16 24 C -0.11 -3.48 5.22 31.32 0.16 -3.32 16 25 C -0.24 -6.72 10.62 67.12 0.71 -6.01 16 26 S 0.32 6.32 22.92 -56.49 -1.29 5.03 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.41 15.05 7.76 -92.71 -0.72 14.33 16 33 H 0.01 0.52 6.55 -2.38 -0.02 0.50 16 34 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 35 H 0.37 21.80 7.19 -92.71 -0.67 21.14 16 36 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.07 2.54 7.79 -2.38 -0.02 2.52 16 38 H 0.06 2.14 7.70 -2.38 -0.02 2.12 16 39 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.95 6.99 -2.39 -0.02 1.93 16 44 H 0.06 2.06 7.67 -2.39 -0.02 2.04 16 45 H 0.20 5.11 8.03 -2.91 -0.02 5.08 16 Total: -1.00 -80.57 382.60 -0.15 -80.72 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.36 Total: 41.58 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.40 Total: 7.20 kcal Atomic # 7 Polarization: -143.54 SS G_CDS: -5.26 Total: -148.80 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.65 Total: -36.75 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -1.29 Total: 5.03 kcal Total: -80.57 -0.15 -80.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568011677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.796 kcal (2) G-P(sol) polarization free energy of solvation -80.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds