Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35964 * 117.00062 * 2 1 4 4 C 1.37559 * 120.82737 * 180.25892 * 3 2 1 5 5 C 1.38043 * 114.25306 * 180.23149 * 4 3 2 6 6 C 1.47116 * 127.76120 * 179.86278 * 5 4 3 7 7 O 1.21626 * 119.99827 * 359.70741 * 6 5 4 8 8 N 1.34775 * 119.99578 * 179.70091 * 6 5 4 9 9 C 1.46506 * 119.99693 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46660 * 35.00912 * 9 8 6 11 11 C 1.52997 * 109.47289 * 275.00198 * 9 8 6 12 12 C 1.53000 * 109.47060 * 300.00274 * 11 9 8 13 13 C 1.53002 * 109.47233 * 299.99657 * 12 11 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 11 15 15 C 1.52999 * 109.46684 * 155.00124 * 9 8 6 16 16 H 1.09002 * 109.46716 * 180.02562 * 15 9 8 17 17 C 1.53002 * 109.47628 * 300.00177 * 15 9 8 18 18 N 1.46502 * 109.47304 * 185.00235 * 17 15 9 19 19 C 1.36938 * 119.99817 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99834 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99517 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99891 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00307 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47298 * 89.99943 * 23 21 19 25 25 H 1.48504 * 109.46869 * 209.99889 * 23 21 19 26 26 H 1.48502 * 109.47220 * 330.00106 * 23 21 19 27 27 S 1.77233 * 104.47522 * 359.60272 * 5 4 3 28 28 N 1.30359 * 120.82131 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46585 * 299.99761 * 1 2 3 30 30 H 1.08995 * 109.46812 * 60.00260 * 1 2 3 31 31 H 1.09000 * 109.46733 * 180.02562 * 1 2 3 32 32 H 1.08001 * 122.87613 * 0.07721 * 4 3 2 33 33 H 0.97000 * 120.00190 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 36 36 H 1.08992 * 109.47399 * 59.99823 * 12 11 9 37 37 H 1.09004 * 109.46724 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.47662 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47075 * 300.00932 * 13 12 11 40 40 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 41 41 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 42 42 H 1.09001 * 109.46463 * 305.00112 * 17 15 9 43 43 H 1.08993 * 109.46613 * 65.00049 * 17 15 9 44 44 H 0.97006 * 119.99954 * 0.02562 * 18 17 15 45 45 H 0.96993 * 120.00579 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4188 1.3033 -0.0053 5 6 3.9006 2.5969 0.0005 6 6 5.3050 3.0352 -0.0001 7 8 6.1993 2.2109 -0.0009 8 7 5.6004 4.3502 0.0001 9 6 6.9989 4.7867 0.0001 10 1 7.5964 4.0915 -0.5897 11 6 7.5233 4.8184 1.4370 12 6 6.6844 5.7942 2.2647 13 6 6.7817 7.1942 1.6554 14 6 6.2572 7.1626 0.2184 15 6 7.0960 6.1867 -0.6093 16 1 8.1366 6.5113 -0.6097 17 6 6.5716 6.1551 -2.0463 18 7 6.7745 7.4655 -2.6692 19 6 6.3796 7.6770 -3.9632 20 1 5.9189 6.8777 -4.5247 21 6 6.5714 8.9188 -4.5531 22 7 6.1923 9.1220 -5.7971 23 14 7.3687 10.3011 -3.5821 24 1 8.8402 10.2580 -3.7768 25 1 6.8445 11.6066 -4.0578 26 1 7.0553 10.1376 -2.1398 27 16 2.4471 3.6110 0.0010 28 7 1.3521 2.3148 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0643 0.4374 -0.0109 33 1 4.8871 5.0075 0.0010 34 1 8.5640 5.1427 1.4369 35 1 7.4541 3.8209 1.8711 36 1 5.6440 5.4694 2.2647 37 1 7.0584 5.8170 3.2883 38 1 6.1845 7.8895 2.2452 39 1 7.8222 7.5190 1.6552 40 1 5.2167 6.8378 0.2185 41 1 6.3269 8.1599 -0.2159 42 1 7.1107 5.3960 -2.6131 43 1 5.5081 5.9167 -2.0396 44 1 7.1886 8.1834 -2.1649 45 1 6.3266 9.9896 -6.2095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569166532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -22.806049 kcal Electronic energy + Delta-G solvation = -27375.890421 eV Core-core repulsion = 23520.744562 eV Total energy + Delta-G solvation = -3855.145859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.68311 -40.28159 -38.41751 -36.68447 -34.89417 -33.90992 -32.03221 -31.71762 -30.16843 -29.88310 -28.31906 -25.78414 -25.02714 -22.96809 -22.39788 -21.97711 -20.79154 -20.26752 -19.34804 -18.86252 -18.05594 -17.65454 -16.57798 -16.56777 -16.00117 -15.55351 -15.15982 -14.94944 -14.63865 -14.49069 -14.19170 -14.00087 -13.69147 -13.63787 -13.47868 -13.00708 -12.82737 -12.42872 -12.34364 -12.21160 -11.90433 -11.69793 -11.66384 -11.45001 -11.14965 -11.13488 -11.04046 -10.84581 -10.55546 -10.35239 -10.26487 -10.10232 -10.04381 -10.00258 -9.59704 -9.15779 -8.91253 -8.70171 -7.25442 -5.78367 -3.14233 -0.15629 0.85938 1.22858 1.92410 2.54492 2.84774 3.08219 3.33894 3.37000 3.43204 4.26744 4.55462 4.56801 4.67574 4.72227 4.75576 4.79924 4.89871 4.93008 5.04021 5.15476 5.19797 5.36422 5.42419 5.43283 5.49851 5.52778 5.57796 5.64236 5.73766 5.76297 5.89973 5.98650 6.03653 6.09512 6.17306 6.29223 6.34348 6.43544 6.64107 6.66840 6.69121 7.22519 7.87908 7.97705 8.40393 9.19310 9.91332 10.10900 11.40116 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.003130 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.512279 B = 8943.975943 C =10289.039652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.304 3.696 4 C -0.129 4.129 5 C -0.180 4.180 6 C 0.595 3.405 7 O -0.516 6.516 8 N -0.704 5.704 9 C 0.156 3.844 10 H 0.096 0.904 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.122 4.122 14 C -0.115 4.115 15 C -0.107 4.107 16 H 0.089 0.911 17 C 0.163 3.837 18 N -0.754 5.754 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 S 0.295 5.705 28 N -0.509 5.509 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.401 0.599 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.028 0.972 43 H 0.026 0.974 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 -13.885 19.129 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.201 6.201 3 C 0.091 3.909 4 C -0.167 4.167 5 C -0.312 4.312 6 C 0.378 3.622 7 O -0.393 6.393 8 N -0.356 5.356 9 C 0.052 3.948 10 H 0.114 0.886 11 C -0.168 4.168 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.127 4.127 16 H 0.108 0.892 17 C 0.035 3.965 18 N -0.400 5.400 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 S 0.445 5.555 28 N -0.351 5.351 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.196 0.804 33 H 0.238 0.762 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.046 0.954 43 H 0.043 0.957 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.335 -13.167 18.886 24.164 hybrid contribution 0.798 0.034 0.448 0.916 sum -6.537 -13.133 19.335 24.270 Atomic orbital electron populations 1.23002 0.76576 1.03699 1.02680 1.86314 1.23100 1.22441 1.88203 1.19909 0.89806 0.85321 0.95872 1.20748 0.92331 0.98587 1.05026 1.26054 0.99507 0.97795 1.07851 1.16619 0.85201 0.83159 0.77223 1.90844 1.46597 1.52555 1.49282 1.45982 1.09951 1.05890 1.73765 1.21067 0.80782 0.96296 0.96665 0.88612 1.21927 0.99993 0.99975 0.94902 1.21509 1.00205 0.95144 0.98650 1.21594 1.01567 0.96538 0.96213 1.21587 0.98797 1.00549 0.94320 1.21716 1.01635 0.93088 0.96218 0.89240 1.20641 0.97683 0.88863 0.89293 1.42698 1.74909 1.09129 1.13221 1.19049 1.33128 0.97922 0.87267 0.89289 1.24675 1.01097 0.97371 0.96001 1.69699 1.52777 1.23473 1.12240 0.86553 0.79543 0.82856 0.79554 1.21107 1.21777 1.20317 1.85134 0.89892 1.11803 1.68692 1.76448 1.26739 1.01087 1.30845 0.92091 0.91956 0.87924 0.80450 0.76206 0.90615 0.91393 0.92225 0.92159 0.92047 0.91821 0.92344 0.90632 0.95369 0.95659 0.80604 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.43 101.05 1.05 1.31 16 2 O -0.29 -2.98 10.51 -19.63 -0.21 -3.19 16 3 C 0.30 3.41 7.36 -18.42 -0.14 3.28 16 4 C -0.13 -1.42 10.09 -39.90 -0.40 -1.82 16 5 C -0.18 -2.06 6.74 -36.05 -0.24 -2.30 16 6 C 0.59 7.58 7.77 -12.66 -0.10 7.48 16 7 O -0.52 -7.93 16.61 5.25 0.09 -7.84 16 8 N -0.70 -8.16 3.61 -54.98 -0.20 -8.36 16 9 C 0.16 1.86 2.23 -67.93 -0.15 1.71 16 10 H 0.10 1.27 7.58 -51.93 -0.39 0.87 16 11 C -0.13 -1.31 5.60 -26.73 -0.15 -1.46 16 12 C -0.12 -1.09 5.77 -26.73 -0.15 -1.24 16 13 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 14 C -0.11 -1.43 4.90 -26.73 -0.13 -1.56 16 15 C -0.11 -1.45 2.02 -90.62 -0.18 -1.63 16 16 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 17 C 0.16 2.94 5.42 -4.04 -0.02 2.91 16 18 N -0.75 -17.08 5.13 -59.91 -0.31 -17.38 16 19 C -0.24 -6.78 10.47 -15.06 -0.16 -6.94 16 20 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 22 N -0.93 -29.17 13.97 55.49 0.78 -28.39 16 23 Si 0.88 21.64 27.74 -169.99 -4.71 16.93 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 27 S 0.30 3.14 23.27 -107.50 -2.50 0.64 16 28 N -0.51 -5.96 11.03 29.18 0.32 -5.64 16 29 H 0.06 0.43 8.12 -51.93 -0.42 0.00 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.18 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.40 4.28 6.03 -40.82 -0.25 4.04 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.55 7.60 -51.93 -0.39 0.16 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.68 6.51 -51.93 -0.34 0.35 16 41 H 0.08 1.11 7.18 -51.93 -0.37 0.74 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.03 0.46 7.61 -51.93 -0.40 0.07 16 44 H 0.36 7.90 4.71 -40.82 -0.19 7.71 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -32.89 375.86 -8.68 -41.57 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.57 Total: 7.63 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.03 Total: -1.62 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.59 Total: -59.77 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.12 Total: -11.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.50 Total: 0.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.89 -8.68 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569166532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.764 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds