Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35964 * 117.00062 * 2 1 4 4 C 1.37559 * 120.82737 * 180.25892 * 3 2 1 5 5 C 1.38043 * 114.25306 * 180.23149 * 4 3 2 6 6 C 1.47116 * 127.76120 * 179.86278 * 5 4 3 7 7 O 1.21626 * 119.99827 * 359.70741 * 6 5 4 8 8 N 1.34775 * 119.99578 * 179.70091 * 6 5 4 9 9 C 1.46506 * 119.99693 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46660 * 35.00912 * 9 8 6 11 11 C 1.52997 * 109.47289 * 275.00198 * 9 8 6 12 12 C 1.53000 * 109.47060 * 300.00274 * 11 9 8 13 13 C 1.53002 * 109.47233 * 299.99657 * 12 11 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 11 15 15 C 1.52999 * 109.46684 * 155.00124 * 9 8 6 16 16 H 1.09002 * 109.46716 * 180.02562 * 15 9 8 17 17 C 1.53002 * 109.47628 * 300.00177 * 15 9 8 18 18 N 1.46502 * 109.47304 * 185.00235 * 17 15 9 19 19 C 1.36938 * 119.99817 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99834 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99517 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99891 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00307 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47298 * 89.99943 * 23 21 19 25 25 H 1.48504 * 109.46869 * 209.99889 * 23 21 19 26 26 H 1.48502 * 109.47220 * 330.00106 * 23 21 19 27 27 S 1.77233 * 104.47522 * 359.60272 * 5 4 3 28 28 N 1.30359 * 120.82131 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46585 * 299.99761 * 1 2 3 30 30 H 1.08995 * 109.46812 * 60.00260 * 1 2 3 31 31 H 1.09000 * 109.46733 * 180.02562 * 1 2 3 32 32 H 1.08001 * 122.87613 * 0.07721 * 4 3 2 33 33 H 0.97000 * 120.00190 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 36 36 H 1.08992 * 109.47399 * 59.99823 * 12 11 9 37 37 H 1.09004 * 109.46724 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.47662 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47075 * 300.00932 * 13 12 11 40 40 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 41 41 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 42 42 H 1.09001 * 109.46463 * 305.00112 * 17 15 9 43 43 H 1.08993 * 109.46613 * 65.00049 * 17 15 9 44 44 H 0.97006 * 119.99954 * 0.02562 * 18 17 15 45 45 H 0.96993 * 120.00579 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4188 1.3033 -0.0053 5 6 3.9006 2.5969 0.0005 6 6 5.3050 3.0352 -0.0001 7 8 6.1993 2.2109 -0.0009 8 7 5.6004 4.3502 0.0001 9 6 6.9989 4.7867 0.0001 10 1 7.5964 4.0915 -0.5897 11 6 7.5233 4.8184 1.4370 12 6 6.6844 5.7942 2.2647 13 6 6.7817 7.1942 1.6554 14 6 6.2572 7.1626 0.2184 15 6 7.0960 6.1867 -0.6093 16 1 8.1366 6.5113 -0.6097 17 6 6.5716 6.1551 -2.0463 18 7 6.7745 7.4655 -2.6692 19 6 6.3796 7.6770 -3.9632 20 1 5.9189 6.8777 -4.5247 21 6 6.5714 8.9188 -4.5531 22 7 6.1923 9.1220 -5.7971 23 14 7.3687 10.3011 -3.5821 24 1 8.8402 10.2580 -3.7768 25 1 6.8445 11.6066 -4.0578 26 1 7.0553 10.1376 -2.1398 27 16 2.4471 3.6110 0.0010 28 7 1.3521 2.3148 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0643 0.4374 -0.0109 33 1 4.8871 5.0075 0.0010 34 1 8.5640 5.1427 1.4369 35 1 7.4541 3.8209 1.8711 36 1 5.6440 5.4694 2.2647 37 1 7.0584 5.8170 3.2883 38 1 6.1845 7.8895 2.2452 39 1 7.8222 7.5190 1.6552 40 1 5.2167 6.8378 0.2185 41 1 6.3269 8.1599 -0.2159 42 1 7.1107 5.3960 -2.6131 43 1 5.5081 5.9167 -2.0396 44 1 7.1886 8.1834 -2.1649 45 1 6.3266 9.9896 -6.2095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569166532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -46.314854 kcal Electronic energy + Delta-G solvation = -27376.909839 eV Core-core repulsion = 23520.744562 eV Total energy + Delta-G solvation = -3856.165277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64274 -41.14950 -39.45745 -37.51769 -36.60334 -34.88018 -33.85334 -32.63952 -31.61900 -30.89393 -29.00564 -27.20168 -26.00834 -24.39100 -23.56592 -22.88337 -22.07864 -21.23330 -20.33417 -19.78422 -19.63978 -18.82732 -17.50908 -17.34730 -17.01652 -16.68647 -16.44344 -16.09131 -15.83957 -15.57484 -15.46832 -15.12127 -14.85888 -14.62427 -14.52786 -14.39312 -14.16773 -13.80945 -13.17775 -13.09634 -13.03075 -12.90604 -12.73575 -12.57637 -12.52435 -12.16293 -12.13973 -12.01573 -11.89223 -11.83493 -11.45446 -11.34363 -11.23476 -11.04183 -10.94435 -10.87809 -10.14963 -9.52972 -9.28172 -8.01421 -5.35241 -1.06033 -0.01289 0.36817 1.03835 1.38695 1.43494 1.50754 1.66287 1.86783 2.25317 2.50015 3.29979 3.35745 3.45844 3.73300 3.77368 3.82384 3.96016 4.06665 4.22963 4.28304 4.30908 4.33734 4.45355 4.47434 4.52910 4.57132 4.66230 4.70445 4.72399 4.90236 4.95097 5.01579 5.08275 5.16095 5.27023 5.30344 5.30693 5.40219 5.48964 5.58261 5.76490 5.90354 6.22027 6.24957 6.88926 7.09552 7.84599 8.05430 9.20356 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.003130 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.512279 B = 8943.975943 C =10289.039652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.301 3.699 4 C -0.128 4.128 5 C -0.190 4.190 6 C 0.598 3.402 7 O -0.546 6.546 8 N -0.698 5.698 9 C 0.159 3.841 10 H 0.081 0.919 11 C -0.123 4.123 12 C -0.113 4.113 13 C -0.115 4.115 14 C -0.115 4.115 15 C -0.094 4.094 16 H 0.096 0.904 17 C 0.160 3.840 18 N -0.752 5.752 19 C -0.234 4.234 20 H 0.051 0.949 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.957 3.043 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.243 1.243 27 S 0.315 5.685 28 N -0.523 5.523 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.132 0.868 32 H 0.186 0.814 33 H 0.407 0.593 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.014 0.986 43 H 0.025 0.975 44 H 0.368 0.632 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 -13.551 22.084 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.208 6.208 3 C 0.088 3.912 4 C -0.166 4.166 5 C -0.322 4.322 6 C 0.382 3.618 7 O -0.425 6.425 8 N -0.350 5.350 9 C 0.055 3.945 10 H 0.099 0.901 11 C -0.161 4.161 12 C -0.151 4.151 13 C -0.152 4.152 14 C -0.153 4.153 15 C -0.113 4.113 16 H 0.114 0.886 17 C 0.034 3.966 18 N -0.398 5.398 19 C -0.365 4.365 20 H 0.069 0.931 21 C -0.257 4.257 22 N -0.637 5.637 23 Si 0.783 3.217 24 H -0.206 1.206 25 H -0.225 1.225 26 H -0.167 1.167 27 S 0.464 5.536 28 N -0.366 5.366 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.203 0.797 33 H 0.244 0.756 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.203 0.797 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.082 -12.854 21.895 26.359 hybrid contribution 0.620 -0.203 -0.543 0.848 sum -6.462 -13.057 21.352 25.849 Atomic orbital electron populations 1.23250 0.75036 1.05641 1.02500 1.86318 1.24648 1.21863 1.87951 1.19983 0.89915 0.85635 0.95636 1.20891 0.92525 0.98783 1.04386 1.25924 0.99187 0.98354 1.08720 1.16715 0.85405 0.83098 0.76609 1.90827 1.47544 1.53259 1.50825 1.45955 1.10116 1.05757 1.73163 1.21010 0.80802 0.94756 0.97909 0.90090 1.21878 1.00808 1.00218 0.93207 1.21493 1.00150 0.94207 0.99227 1.21546 1.02007 0.97299 0.94341 1.21584 0.99081 0.98868 0.95728 1.21577 1.01964 0.94588 0.93198 0.88582 1.20782 0.97654 0.86296 0.91918 1.42640 1.74590 1.11049 1.11559 1.19002 1.31672 0.96816 0.89049 0.93114 1.25551 1.02512 1.00462 0.97144 1.69897 1.55058 1.24151 1.14573 0.85388 0.78245 0.78320 0.79705 1.20569 1.22484 1.16702 1.85007 0.89044 1.11144 1.68360 1.76408 1.27333 1.01547 1.31299 0.91960 0.92393 0.84996 0.79673 0.75571 0.89414 0.91833 0.92139 0.90444 0.90798 0.91216 0.91820 0.92473 0.96844 0.95722 0.79747 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.43 113.37 1.18 1.57 16 2 O -0.30 -5.80 10.51 -93.14 -0.98 -6.78 16 3 C 0.30 6.53 7.36 84.75 0.62 7.15 16 4 C -0.13 -2.74 10.09 22.06 0.22 -2.52 16 5 C -0.19 -4.23 6.74 24.56 0.17 -4.07 16 6 C 0.60 14.91 7.77 86.57 0.67 15.58 16 7 O -0.55 -16.65 16.61 -4.11 -0.07 -16.72 16 8 N -0.70 -15.48 3.61 -446.11 -1.61 -17.09 16 9 C 0.16 3.58 2.23 44.99 0.10 3.68 16 10 H 0.08 2.10 7.58 -2.39 -0.02 2.08 16 11 C -0.12 -2.18 5.60 30.59 0.17 -2.01 16 12 C -0.11 -1.71 5.77 30.60 0.18 -1.53 16 13 C -0.11 -1.89 5.92 30.59 0.18 -1.70 16 14 C -0.11 -2.57 4.90 30.60 0.15 -2.42 16 15 C -0.09 -2.38 2.02 -10.79 -0.02 -2.40 16 16 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 17 C 0.16 5.72 5.42 86.38 0.47 6.19 16 18 N -0.75 -33.62 5.13 -343.45 -1.76 -35.38 16 19 C -0.23 -13.27 10.47 84.03 0.88 -12.39 16 20 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 21 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 22 N -0.99 -63.28 13.97 21.65 0.30 -62.98 16 23 Si 0.96 44.30 27.74 68.60 1.90 46.21 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.24 -9.77 6.52 99.48 0.65 -9.13 16 27 S 0.31 6.41 23.27 -56.49 -1.31 5.10 16 28 N -0.52 -11.81 11.03 -175.23 -1.93 -13.74 16 29 H 0.06 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 33 H 0.41 8.14 6.03 -92.71 -0.56 7.59 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 0.92 7.60 -2.39 -0.02 0.90 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.34 6.51 -2.39 -0.02 1.33 16 41 H 0.06 1.52 7.18 -2.39 -0.02 1.50 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.02 0.90 7.61 -2.39 -0.02 0.88 16 44 H 0.37 15.37 4.71 -92.70 -0.44 14.93 16 45 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -72.20 375.86 -0.06 -72.25 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.03 Total: 27.35 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.44 Total: 1.79 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -5.00 Total: -129.19 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.05 Total: -23.50 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.21 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -1.31 Total: 5.10 kcal Total: -72.20 -0.06 -72.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569166532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.939 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds