Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35960 * 117.00646 * 2 1 4 4 C 1.37568 * 120.83144 * 180.26811 * 3 2 1 5 5 C 1.38034 * 114.25119 * 180.24332 * 4 3 2 6 6 C 1.47121 * 127.75766 * 179.79999 * 5 4 3 7 7 O 1.21629 * 120.00014 * 359.71671 * 6 5 4 8 8 N 1.34779 * 119.99741 * 179.70628 * 6 5 4 9 9 C 1.46500 * 119.99793 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47092 * 325.00176 * 9 8 6 11 11 C 1.53005 * 109.47094 * 84.99912 * 9 8 6 12 12 C 1.52999 * 109.47159 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47317 * 300.00546 * 12 11 9 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 11 15 15 C 1.52997 * 109.47007 * 205.00228 * 9 8 6 16 16 H 1.09002 * 109.46695 * 299.99637 * 15 9 8 17 17 C 1.52997 * 109.47232 * 59.99903 * 15 9 8 18 18 N 1.46501 * 109.46866 * 184.99942 * 17 15 9 19 19 C 1.36935 * 119.99654 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00358 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00100 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99683 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00126 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46737 * 59.99932 * 23 21 19 25 25 H 1.48495 * 109.46855 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47262 * 300.00004 * 23 21 19 27 27 S 1.77226 * 104.48058 * 359.54575 * 5 4 3 28 28 N 1.30365 * 120.82215 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46582 * 59.99454 * 1 2 3 30 30 H 1.08996 * 109.47495 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46741 * 300.00407 * 1 2 3 32 32 H 1.08000 * 122.87241 * 0.08335 * 4 3 2 33 33 H 0.97004 * 119.99983 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.47360 * 300.00194 * 11 9 8 35 35 H 1.09002 * 109.46935 * 60.00169 * 11 9 8 36 36 H 1.08996 * 109.46929 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.46716 * 60.00455 * 12 11 9 38 38 H 1.09002 * 109.47153 * 299.99641 * 13 12 11 39 39 H 1.09001 * 109.46832 * 179.97438 * 13 12 11 40 40 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 41 41 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 42 42 H 1.09002 * 109.47223 * 304.99821 * 17 15 9 43 43 H 1.09001 * 109.46547 * 65.00156 * 17 15 9 44 44 H 0.96998 * 120.00018 * 0.02562 * 18 17 15 45 45 H 0.96996 * 119.99982 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2113 0.0000 4 6 3.4190 1.3031 -0.0055 5 6 3.9008 2.5966 0.0006 6 6 5.3052 3.0349 0.0012 7 8 6.1995 2.2105 0.0011 8 7 5.6007 4.3499 0.0016 9 6 6.9992 4.7863 0.0016 10 1 7.5969 4.0907 0.5907 11 6 7.5234 4.8187 -1.4355 12 6 8.9837 5.2751 -1.4355 13 6 9.0807 6.6748 -0.8256 14 6 8.5566 6.6423 0.6115 15 6 7.0966 6.1859 0.6118 16 1 6.4990 6.8815 0.0225 17 6 6.5725 6.1535 2.0488 18 7 6.5540 7.5137 2.5926 19 6 6.1202 7.7334 3.8727 20 1 5.7913 6.9040 4.4813 21 6 6.1022 9.0222 4.3880 22 7 6.5026 10.0331 3.6462 23 14 5.5098 9.3220 6.1340 24 1 6.3669 8.5679 7.0838 25 1 5.5888 10.7726 6.4413 26 1 4.1035 8.8636 6.2651 27 16 2.4474 3.6108 -0.0001 28 7 1.3523 2.3148 -0.0005 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.0644 0.4372 -0.0114 33 1 4.8874 5.0073 0.0019 34 1 7.4540 3.8215 -1.8702 35 1 6.9257 5.5143 -2.0246 36 1 9.3572 5.2977 -2.4592 37 1 9.5816 4.5798 -0.8463 38 1 8.4828 7.3701 -1.4148 39 1 10.1211 6.9997 -0.8252 40 1 9.1544 5.9471 1.2007 41 1 8.6252 7.6397 1.0459 42 1 5.5620 5.7449 2.0578 43 1 7.2233 5.5271 2.6588 44 1 6.8491 8.2587 2.0459 45 1 6.4897 10.9337 4.0060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569166533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -29.960624 kcal Electronic energy + Delta-G solvation = -27023.136925 eV Core-core repulsion = 23167.680820 eV Total energy + Delta-G solvation = -3855.456105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.57439 -40.10604 -38.32542 -36.67342 -34.64971 -34.31684 -31.94654 -31.68546 -29.75118 -29.41427 -28.25940 -25.57065 -24.91175 -23.10086 -22.58336 -21.27270 -20.70742 -20.41665 -19.64774 -18.76091 -17.98417 -17.26381 -16.54905 -16.46680 -16.20358 -15.25894 -15.07448 -14.83612 -14.66771 -14.31346 -14.02256 -13.81347 -13.70236 -13.62143 -13.29274 -13.05820 -12.76826 -12.48764 -12.37095 -11.89104 -11.72126 -11.57376 -11.44012 -11.18278 -11.10371 -10.90103 -10.89573 -10.73986 -10.53368 -10.30204 -10.19416 -10.07152 -10.00160 -9.97246 -9.66957 -9.07825 -8.86776 -8.67713 -6.93332 -5.77921 -3.06284 -0.13188 0.88716 1.25552 1.94368 2.56659 2.87385 3.10272 3.43683 3.48307 3.49056 4.29113 4.54420 4.64230 4.77639 4.80916 4.86331 4.90666 4.93879 5.02537 5.19521 5.21185 5.30977 5.39529 5.51308 5.56255 5.59036 5.62474 5.69513 5.77983 5.84502 6.03826 6.09155 6.14967 6.20857 6.25258 6.33292 6.39837 6.53144 6.65579 6.68567 6.74224 6.86060 7.27821 7.69086 7.91473 8.41180 9.52606 10.09600 10.44578 11.44813 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009015 B = 0.003301 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.097865 B = 8480.761719 C =11039.040682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.304 3.696 4 C -0.130 4.130 5 C -0.180 4.180 6 C 0.595 3.405 7 O -0.517 6.517 8 N -0.707 5.707 9 C 0.154 3.846 10 H 0.093 0.907 11 C -0.127 4.127 12 C -0.114 4.114 13 C -0.122 4.122 14 C -0.107 4.107 15 C -0.101 4.101 16 H 0.077 0.923 17 C 0.157 3.843 18 N -0.730 5.730 19 C -0.239 4.239 20 H 0.068 0.932 21 C -0.012 4.012 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 S 0.300 5.700 28 N -0.511 5.511 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.178 0.822 33 H 0.403 0.597 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -15.978 -13.550 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.090 3.910 4 C -0.168 4.168 5 C -0.312 4.312 6 C 0.378 3.622 7 O -0.394 6.394 8 N -0.357 5.357 9 C 0.050 3.950 10 H 0.111 0.889 11 C -0.166 4.166 12 C -0.152 4.152 13 C -0.160 4.160 14 C -0.145 4.145 15 C -0.120 4.120 16 H 0.095 0.905 17 C 0.030 3.970 18 N -0.374 5.374 19 C -0.371 4.371 20 H 0.086 0.914 21 C -0.208 4.208 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 S 0.450 5.550 28 N -0.353 5.353 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.195 0.805 33 H 0.238 0.762 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.146 -15.240 -13.373 21.186 hybrid contribution -0.025 -0.596 0.890 1.072 sum -6.171 -15.835 -12.482 21.087 Atomic orbital electron populations 1.22995 0.76611 1.03661 1.02673 1.86308 1.23071 1.22487 1.88237 1.19907 0.89796 0.85307 0.95950 1.20739 0.92317 0.98573 1.05189 1.26067 0.99557 0.97814 1.07785 1.16625 0.85190 0.83163 0.77242 1.90842 1.46623 1.52550 1.49355 1.45978 1.10058 1.05953 1.73711 1.21150 0.80226 0.96805 0.96786 0.88865 1.21914 0.96803 1.01657 0.96224 1.21482 0.95718 0.97299 1.00744 1.21608 1.01049 0.96502 0.96807 1.21487 0.94099 1.03013 0.95859 1.21613 0.98166 0.94199 0.98069 0.90486 1.20678 0.96989 0.89102 0.90270 1.42337 1.78771 1.02329 1.13991 1.19169 1.35379 0.92574 0.89944 0.91354 1.24714 1.02217 0.95647 0.98261 1.69639 1.53554 0.98754 1.36277 0.86286 0.78584 0.76789 0.84653 1.21291 1.21696 1.21281 1.85189 0.89781 1.11574 1.68491 1.76439 1.26860 1.01144 1.30840 0.92088 0.87951 0.91992 0.80489 0.76224 0.91620 0.91673 0.92032 0.91795 0.91952 0.91999 0.91926 0.90073 0.96465 0.96258 0.78178 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.43 101.05 1.05 1.32 16 2 O -0.30 -3.04 10.51 -19.62 -0.21 -3.24 16 3 C 0.30 3.47 7.36 -18.42 -0.14 3.34 16 4 C -0.13 -1.47 10.09 -39.90 -0.40 -1.87 16 5 C -0.18 -2.13 6.74 -36.05 -0.24 -2.37 16 6 C 0.59 7.91 7.77 -12.66 -0.10 7.82 16 7 O -0.52 -8.22 16.61 5.25 0.09 -8.14 16 8 N -0.71 -8.75 4.30 -54.98 -0.24 -8.99 16 9 C 0.15 2.00 1.90 -67.93 -0.13 1.87 16 10 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 11 C -0.13 -1.43 5.50 -26.73 -0.15 -1.58 16 12 C -0.11 -1.21 5.92 -26.73 -0.16 -1.37 16 13 C -0.12 -1.42 5.92 -26.73 -0.16 -1.57 16 14 C -0.11 -1.53 5.08 -26.75 -0.14 -1.67 16 15 C -0.10 -1.49 1.80 -90.64 -0.16 -1.65 16 16 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 17 C 0.16 3.01 5.57 -4.04 -0.02 2.98 16 18 N -0.73 -17.66 5.33 -59.91 -0.32 -17.98 16 19 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 S 0.30 3.31 23.27 -107.50 -2.50 0.81 16 28 N -0.51 -6.12 11.03 29.19 0.32 -5.79 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 32 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.40 4.55 7.75 -40.82 -0.32 4.23 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.37 7.18 -51.93 -0.37 1.00 16 42 H 0.02 0.33 7.30 -51.93 -0.38 -0.05 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.38 9.69 6.85 -40.82 -0.28 9.41 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -31.70 383.08 -9.15 -40.85 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.78 Total: 8.34 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -0.99 Total: -1.94 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.49 Total: -59.67 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.12 Total: -11.38 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.50 Total: 0.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.70 -9.15 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569166533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.885 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds