Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48502 * 109.47281 * 269.99939 * 3 2 1 5 5 H 1.48503 * 109.47201 * 29.99861 * 3 2 1 6 6 H 1.48500 * 109.47189 * 149.99930 * 3 2 1 7 7 C 1.38802 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00170 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47124 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99808 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.46919 * 120.63255 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 N 1.46900 * 109.42051 * 178.67519 * 16 15 14 18 18 C 1.46907 * 110.99928 * 275.13331 * 17 16 15 19 19 C 1.53000 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46771 * 179.97438 * 19 18 17 21 21 C 1.35351 * 126.91165 * 274.67967 * 20 19 18 22 22 N 1.33770 * 106.49450 * 179.91138 * 21 20 19 23 23 N 1.28630 * 108.89032 * 0.36949 * 22 21 20 24 24 N 1.28726 * 110.17623 * 359.76602 * 23 22 21 25 25 H 0.96994 * 125.87231 * 180.02562 * 24 23 22 26 26 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 27 27 C 1.46933 * 120.62741 * 0.02562 * 13 11 10 28 28 H 0.96996 * 119.99581 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46598 * 59.99628 * 10 9 7 30 30 H 1.09001 * 109.47042 * 299.99889 * 10 9 7 31 31 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 32 32 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 33 33 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 34 34 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 35 35 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 36 36 H 1.00902 * 110.99806 * 39.07772 * 17 16 15 37 37 H 1.09005 * 109.46585 * 299.99650 * 18 17 16 38 38 H 1.08994 * 109.47323 * 59.99764 * 18 17 16 39 39 H 1.09003 * 109.46848 * 299.99712 * 19 18 17 40 40 H 1.09004 * 109.47207 * 59.99877 * 19 18 17 41 41 H 1.08001 * 126.75105 * 0.04019 * 21 20 19 42 42 H 1.08994 * 109.50232 * 301.42239 * 26 16 15 43 43 H 1.09007 * 109.52628 * 181.33900 * 26 16 15 44 44 H 1.08994 * 109.58580 * 353.38021 * 27 13 11 45 45 H 1.09006 * 109.57831 * 113.65514 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3439 -7.7247 0.0019 15 6 2.9815 -8.4840 -1.1659 16 6 4.5073 -8.3646 -1.0703 17 7 5.1259 -9.1174 -2.1697 18 6 5.2745 -10.5360 -1.8182 19 6 5.9202 -11.2857 -2.9852 20 6 6.0732 -12.7408 -2.6243 21 6 7.0962 -13.3057 -1.9415 22 7 6.8170 -14.6108 -1.8501 23 7 5.6993 -14.8401 -2.4441 24 7 5.2185 -13.7464 -2.9231 25 1 4.3863 -13.6581 -3.4134 26 6 4.9144 -6.8927 -1.1679 27 6 4.2958 -6.1174 0.0003 28 1 -0.4849 0.8400 -0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1244 -3.7315 -0.8895 31 1 2.6101 -8.2089 0.9415 32 1 1.2600 -7.7211 -0.1129 33 1 2.6917 -9.5337 -1.1189 34 1 2.6417 -8.0542 -2.1081 35 1 4.8437 -8.7720 -0.1169 36 1 4.5987 -9.0097 -3.0232 37 1 5.9054 -10.6270 -0.9339 38 1 4.2937 -10.9635 -1.6104 39 1 5.2890 -11.1946 -3.8692 40 1 6.9011 -10.8582 -3.1935 41 1 7.9658 -12.8017 -1.5462 42 1 4.5566 -6.4779 -2.1102 43 1 6.0005 -6.8114 -1.1237 44 1 4.5001 -5.0533 -0.1181 45 1 4.7204 -6.4686 0.9408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577710340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = 53.109800 kcal Electronic energy + Delta-G solvation = -25883.567627 eV Core-core repulsion = 22064.006477 eV Total energy + Delta-G solvation = -3819.561150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.79600 -40.10179 -38.18300 -36.14225 -34.14004 -33.47587 -32.45283 -31.73342 -31.20520 -29.14101 -28.15922 -25.53005 -24.67920 -23.48602 -23.35730 -23.13363 -22.02336 -21.10653 -19.20736 -18.71190 -17.75062 -16.86180 -16.70201 -16.07228 -15.67179 -15.66288 -15.33501 -15.10509 -14.82575 -14.72667 -14.34812 -14.13313 -14.05692 -13.79702 -13.13071 -12.99663 -12.87449 -12.70275 -12.40043 -12.25006 -12.10761 -11.98183 -11.68593 -11.48598 -11.36993 -11.12147 -11.08473 -11.08165 -11.03054 -10.84063 -10.77460 -9.82960 -9.68509 -9.41201 -9.08987 -8.92076 -8.58604 -8.25407 -6.53060 -6.23992 -3.94884 1.02101 2.06240 2.20835 2.88758 2.99744 3.20479 3.23983 3.28486 3.47249 3.56362 3.99922 4.17689 4.19442 4.33140 4.38889 4.47085 4.56919 4.70289 4.74125 4.85602 4.90839 4.94007 4.99450 5.06496 5.11283 5.22557 5.26634 5.33565 5.42079 5.43989 5.53120 5.60787 5.63519 5.67315 5.76763 5.84064 5.88149 5.97442 6.08234 6.29258 6.49137 6.59478 6.84556 7.50348 7.57308 7.94796 8.32757 8.51298 9.21352 10.83430 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.033514 B = 0.001660 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.278519 B =16864.324545 C =17350.422210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.518 6.518 13 N -0.621 5.621 14 C 0.117 3.883 15 C -0.163 4.163 16 C 0.090 3.910 17 N -0.683 5.683 18 C 0.063 3.937 19 C -0.047 4.047 20 C -0.006 4.006 21 C -0.044 4.044 22 N -0.266 5.266 23 N -0.082 5.082 24 N -0.390 5.390 25 H 0.447 0.553 26 C -0.121 4.121 27 C 0.108 3.892 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.343 0.657 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.192 0.808 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.074 -23.200 -5.882 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.392 6.392 13 N -0.357 5.357 14 C -0.007 4.007 15 C -0.202 4.202 16 C -0.020 4.020 17 N -0.313 5.313 18 C -0.068 4.068 19 C -0.087 4.087 20 C -0.141 4.141 21 C -0.202 4.202 22 N -0.133 5.133 23 N -0.063 5.063 24 N -0.111 5.111 25 H 0.293 0.707 26 C -0.160 4.160 27 C -0.016 4.016 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.161 0.839 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.209 0.791 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.696 -24.790 -5.443 28.379 hybrid contribution 0.682 2.114 -0.551 2.288 sum 13.378 -22.677 -5.994 27.003 Atomic orbital electron populations 1.70017 1.05964 1.27466 1.46816 1.24991 0.95023 0.99029 0.94508 0.86170 0.79426 0.81560 0.78357 1.20266 1.20744 1.19671 1.22858 0.94890 0.91602 1.59015 0.90914 1.85410 1.05028 0.96400 1.96707 1.23553 1.06473 0.95347 1.04724 1.20355 0.86190 0.86253 0.74861 1.90688 1.15254 1.85249 1.48048 1.48119 1.06453 1.05611 1.75547 1.21380 1.00731 0.81419 0.97131 1.22697 0.96887 1.00335 1.00331 1.21638 0.91359 0.94520 0.94460 1.60577 1.55678 1.08859 1.06167 1.21966 0.99142 0.87891 0.97755 1.20137 1.04475 0.85496 0.98611 1.22261 0.93408 0.93495 1.04931 1.23487 1.01423 0.91119 1.04132 1.75130 1.06767 1.15704 1.15660 1.78333 1.07239 1.08552 1.12142 1.45174 1.20401 1.05921 1.39602 0.70739 1.21901 1.01358 0.93590 0.99164 1.21756 0.79847 1.01780 0.98257 0.92176 0.89240 0.89222 0.91940 0.88890 0.91329 0.91063 0.90176 0.83906 0.90096 0.95115 0.90347 0.87546 0.79097 0.91182 0.89852 0.88888 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -2.97 4.50 36.00 0.16 -2.81 16 11 C 0.54 9.87 7.72 -10.99 -0.08 9.78 16 12 O -0.52 -11.61 15.27 5.56 0.08 -11.53 16 13 N -0.62 -8.20 2.97 -172.74 -0.51 -8.72 16 14 C 0.12 1.29 6.42 -3.71 -0.02 1.26 16 15 C -0.16 -1.28 5.36 -26.45 -0.14 -1.42 16 16 C 0.09 0.60 2.43 -67.52 -0.16 0.44 16 17 N -0.68 -3.51 6.25 -106.51 -0.67 -4.17 16 18 C 0.06 0.25 5.46 -3.82 -0.02 0.23 16 19 C -0.05 -0.13 6.04 -27.88 -0.17 -0.30 16 20 C -0.01 -0.03 6.56 -82.09 -0.54 -0.57 16 21 C -0.04 -0.30 11.99 -17.74 -0.21 -0.51 16 22 N -0.27 -2.64 12.41 30.24 0.38 -2.27 16 23 N -0.08 -0.75 13.38 60.35 0.81 0.06 16 24 N -0.39 -2.06 6.98 33.54 0.23 -1.82 16 25 H 0.45 0.80 8.96 -190.40 -1.71 -0.90 16 26 C -0.12 -0.95 5.69 -26.59 -0.15 -1.10 16 27 C 0.11 1.06 6.34 -3.68 -0.02 1.03 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.64 7.94 -51.92 -0.41 1.23 16 30 H 0.09 1.63 7.69 -51.92 -0.40 1.23 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 33 H 0.07 0.45 7.43 -51.93 -0.39 0.06 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.54 7.80 -51.93 -0.40 0.13 16 36 H 0.34 1.61 8.48 -39.29 -0.33 1.27 16 37 H 0.08 0.37 8.06 -51.93 -0.42 -0.04 16 38 H 0.03 0.13 7.42 -51.93 -0.39 -0.25 16 39 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -36.54 383.33 -9.62 -46.15 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -8.04 Total: -3.80 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.17 Total: -6.72 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.97 Total: -42.09 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.54 -9.62 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.265 kcal (2) G-P(sol) polarization free energy of solvation -36.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds