Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48502 * 109.47281 * 269.99939 * 3 2 1 5 5 H 1.48503 * 109.47201 * 29.99861 * 3 2 1 6 6 H 1.48500 * 109.47189 * 149.99930 * 3 2 1 7 7 C 1.38802 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00170 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47124 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99808 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.46919 * 120.63255 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 N 1.46900 * 109.42051 * 178.67519 * 16 15 14 18 18 C 1.46907 * 110.99928 * 275.13331 * 17 16 15 19 19 C 1.53000 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46771 * 179.97438 * 19 18 17 21 21 C 1.35351 * 126.91165 * 274.67967 * 20 19 18 22 22 N 1.33770 * 106.49450 * 179.91138 * 21 20 19 23 23 N 1.28630 * 108.89032 * 0.36949 * 22 21 20 24 24 N 1.28726 * 110.17623 * 359.76602 * 23 22 21 25 25 H 0.96994 * 125.87231 * 180.02562 * 24 23 22 26 26 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 27 27 C 1.46933 * 120.62741 * 0.02562 * 13 11 10 28 28 H 0.96996 * 119.99581 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46598 * 59.99628 * 10 9 7 30 30 H 1.09001 * 109.47042 * 299.99889 * 10 9 7 31 31 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 32 32 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 33 33 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 34 34 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 35 35 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 36 36 H 1.00902 * 110.99806 * 39.07772 * 17 16 15 37 37 H 1.09005 * 109.46585 * 299.99650 * 18 17 16 38 38 H 1.08994 * 109.47323 * 59.99764 * 18 17 16 39 39 H 1.09003 * 109.46848 * 299.99712 * 19 18 17 40 40 H 1.09004 * 109.47207 * 59.99877 * 19 18 17 41 41 H 1.08001 * 126.75105 * 0.04019 * 21 20 19 42 42 H 1.08994 * 109.50232 * 301.42239 * 26 16 15 43 43 H 1.09007 * 109.52628 * 181.33900 * 26 16 15 44 44 H 1.08994 * 109.58580 * 353.38021 * 27 13 11 45 45 H 1.09006 * 109.57831 * 113.65514 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3439 -7.7247 0.0019 15 6 2.9815 -8.4840 -1.1659 16 6 4.5073 -8.3646 -1.0703 17 7 5.1259 -9.1174 -2.1697 18 6 5.2745 -10.5360 -1.8182 19 6 5.9202 -11.2857 -2.9852 20 6 6.0732 -12.7408 -2.6243 21 6 7.0962 -13.3057 -1.9415 22 7 6.8170 -14.6108 -1.8501 23 7 5.6993 -14.8401 -2.4441 24 7 5.2185 -13.7464 -2.9231 25 1 4.3863 -13.6581 -3.4134 26 6 4.9144 -6.8927 -1.1679 27 6 4.2958 -6.1174 0.0003 28 1 -0.4849 0.8400 -0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1244 -3.7315 -0.8895 31 1 2.6101 -8.2089 0.9415 32 1 1.2600 -7.7211 -0.1129 33 1 2.6917 -9.5337 -1.1189 34 1 2.6417 -8.0542 -2.1081 35 1 4.8437 -8.7720 -0.1169 36 1 4.5987 -9.0097 -3.0232 37 1 5.9054 -10.6270 -0.9339 38 1 4.2937 -10.9635 -1.6104 39 1 5.2890 -11.1946 -3.8692 40 1 6.9011 -10.8582 -3.1935 41 1 7.9658 -12.8017 -1.5462 42 1 4.5566 -6.4779 -2.1102 43 1 6.0005 -6.8114 -1.1237 44 1 4.5001 -5.0533 -0.1181 45 1 4.7204 -6.4686 0.9408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577710340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = 25.201448 kcal Electronic energy + Delta-G solvation = -25884.777824 eV Core-core repulsion = 22064.006477 eV Total energy + Delta-G solvation = -3820.771347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.27858 -41.19990 -39.08617 -36.90297 -34.76006 -34.58023 -34.03100 -32.63877 -31.91358 -30.34651 -28.81186 -27.65934 -25.40332 -24.18462 -24.02383 -23.63767 -22.40853 -21.91863 -20.40292 -19.53553 -19.15048 -18.20192 -17.19146 -16.95339 -16.86373 -16.72482 -16.32141 -16.23755 -15.86700 -15.49791 -15.20341 -15.07377 -14.78546 -14.68698 -14.46879 -14.30834 -13.79718 -13.46114 -13.36180 -13.16143 -13.09775 -12.88619 -12.71255 -12.68665 -12.59837 -12.29948 -12.18317 -11.88738 -11.72829 -11.67058 -11.60657 -11.47949 -11.13819 -10.86965 -10.26058 -10.14434 -9.72661 -9.31810 -8.67387 -8.34242 -6.12786 0.57786 1.26269 1.43236 1.46765 1.54509 1.56766 1.57406 1.88579 2.11250 2.27953 3.00089 3.04551 3.26201 3.61060 3.65182 3.81311 3.86880 3.89197 4.04103 4.08815 4.19830 4.21175 4.26100 4.31478 4.36239 4.44280 4.48898 4.51747 4.66179 4.71050 4.76081 4.83007 4.90501 5.03388 5.09741 5.11891 5.17478 5.23578 5.34246 5.42252 5.59787 5.98890 6.05794 6.20138 6.28405 6.47443 7.07065 7.14217 7.43743 8.74989 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.033514 B = 0.001660 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.278519 B =16864.324545 C =17350.422210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.123 4.123 11 C 0.532 3.468 12 O -0.570 6.570 13 N -0.606 5.606 14 C 0.111 3.889 15 C -0.151 4.151 16 C 0.097 3.903 17 N -0.680 5.680 18 C 0.065 3.935 19 C -0.038 4.038 20 C 0.011 3.989 21 C -0.058 4.058 22 N -0.307 5.307 23 N -0.119 5.119 24 N -0.377 5.377 25 H 0.461 0.539 26 C -0.114 4.114 27 C 0.099 3.901 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.347 0.653 37 H 0.079 0.921 38 H 0.030 0.970 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.213 0.787 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.012 -23.255 -6.348 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.274 4.274 11 C 0.319 3.681 12 O -0.449 6.449 13 N -0.340 5.340 14 C -0.012 4.012 15 C -0.191 4.191 16 C -0.013 4.013 17 N -0.310 5.310 18 C -0.064 4.064 19 C -0.077 4.077 20 C -0.125 4.125 21 C -0.216 4.216 22 N -0.173 5.173 23 N -0.098 5.098 24 N -0.100 5.100 25 H 0.309 0.691 26 C -0.153 4.153 27 C -0.024 4.024 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.166 0.834 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.229 0.771 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.106 0.894 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.676 -24.912 -5.926 30.024 hybrid contribution -0.173 2.025 -0.414 2.074 sum 15.502 -22.887 -6.341 28.361 Atomic orbital electron populations 1.70187 1.08012 1.28590 1.48021 1.26130 0.95948 1.03320 0.93709 0.84953 0.78240 0.75973 0.78818 1.19271 1.20403 1.18070 1.23199 0.95359 0.91873 1.58875 0.89807 1.85601 1.10760 0.99377 1.97031 1.23367 1.03307 0.94376 1.06344 1.20147 0.85987 0.86774 0.75145 1.90670 1.17401 1.85834 1.50998 1.48130 1.07486 1.05344 1.73060 1.21589 0.99480 0.80400 0.99690 1.22627 0.97775 1.00651 0.98058 1.21529 0.90121 0.94104 0.95523 1.60535 1.55257 1.09387 1.05782 1.21944 0.99195 0.87210 0.98101 1.20140 1.05311 0.83563 0.98724 1.22536 0.92390 0.94164 1.03405 1.23982 1.02725 0.90370 1.04520 1.75077 1.07578 1.17676 1.16938 1.78268 1.07772 1.10053 1.13729 1.45215 1.20765 1.05330 1.38701 0.69071 1.21839 1.02083 0.93926 0.97418 1.22086 0.77486 1.02240 1.00545 0.92022 0.87472 0.87417 0.89864 0.91728 0.89444 0.92285 0.89286 0.83390 0.90295 0.95139 0.88587 0.86644 0.77072 0.92374 0.88086 0.89354 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.70 13.22 21.65 0.29 -55.42 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.55 -30.81 9.50 67.96 0.65 -30.17 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.12 -4.83 4.50 71.24 0.32 -4.51 16 11 C 0.53 19.71 7.72 87.66 0.68 20.38 16 12 O -0.57 -26.59 15.27 -3.03 -0.05 -26.64 16 13 N -0.61 -15.20 2.97 -818.81 -2.43 -17.64 16 14 C 0.11 2.29 6.42 86.36 0.55 2.85 16 15 C -0.15 -2.01 5.36 30.78 0.16 -1.85 16 16 C 0.10 0.96 2.43 45.04 0.11 1.06 16 17 N -0.68 -4.40 6.25 -490.89 -3.07 -7.47 16 18 C 0.07 0.28 5.46 86.30 0.47 0.75 16 19 C -0.04 -0.07 6.04 29.85 0.18 0.11 16 20 C 0.01 0.08 6.56 41.35 0.27 0.35 16 21 C -0.06 -0.68 11.99 83.73 1.00 0.32 16 22 N -0.31 -5.99 12.41 -58.26 -0.72 -6.71 16 23 N -0.12 -2.11 13.38 37.02 0.50 -1.61 16 24 N -0.38 -3.38 6.98 -47.79 -0.33 -3.71 16 25 H 0.46 0.81 8.96 -219.96 -1.97 -1.17 16 26 C -0.11 -1.41 5.69 30.69 0.17 -1.23 16 27 C 0.10 1.66 6.34 86.38 0.55 2.21 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.11 3.81 7.94 -2.39 -0.02 3.79 16 30 H 0.11 3.82 7.69 -2.39 -0.02 3.80 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.74 7.00 -2.39 -0.02 1.72 16 33 H 0.09 0.88 7.43 -2.39 -0.02 0.86 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 0.80 7.80 -2.39 -0.02 0.78 16 36 H 0.35 1.99 8.48 -89.69 -0.76 1.23 16 37 H 0.08 0.43 8.06 -2.38 -0.02 0.41 16 38 H 0.03 0.15 7.42 -2.39 -0.02 0.13 16 39 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.21 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 0.97 8.14 -2.38 -0.02 0.96 16 44 H 0.09 1.59 5.93 -2.39 -0.01 1.58 16 45 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -83.71 383.33 -1.08 -84.79 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -1.71 Total: 7.63 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.59 Total: -8.49 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -5.78 Total: -92.56 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -83.71 -1.08 -84.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.990 kcal (2) G-P(sol) polarization free energy of solvation -83.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds