Wall clock time and date at job start Sat Apr 11 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86802 * 120.00211 * 2 1 4 4 H 1.48505 * 109.47021 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46859 * 299.99661 * 3 2 1 6 6 H 1.48494 * 109.47105 * 59.99557 * 3 2 1 7 7 C 1.38992 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99896 * 180.02562 * 7 2 1 9 9 N 1.37320 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.36494 * 126.06574 * 180.32211 * 9 7 2 11 11 C 1.35678 * 107.50643 * 180.12217 * 10 9 7 12 12 N 1.40595 * 126.08602 * 179.84242 * 11 10 9 13 13 C 1.34779 * 120.00588 * 179.71519 * 12 11 10 14 14 O 1.21302 * 119.99613 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99940 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.47556 * 320.00134 * 15 13 12 17 17 N 1.46905 * 109.46910 * 200.00173 * 15 13 12 18 18 C 1.52998 * 109.47049 * 80.00455 * 15 13 12 19 19 C 1.50698 * 109.47017 * 184.99831 * 18 15 13 20 20 C 1.34245 * 126.50131 * 264.68520 * 19 18 15 21 21 N 1.36826 * 109.92803 * 179.83230 * 20 19 18 22 22 H 0.97004 * 125.06353 * 180.18192 * 21 20 19 23 23 C 1.37686 * 109.87496 * 0.44923 * 21 20 19 24 24 C 1.39129 * 133.50833 * 179.71492 * 23 21 20 25 25 C 1.37745 * 119.77884 * 180.02562 * 24 23 21 26 26 C 1.38828 * 120.66950 * 359.97438 * 25 24 23 27 27 C 1.36634 * 120.52619 * 0.02562 * 26 25 24 28 28 C 1.39623 * 119.75962 * 0.02562 * 27 26 25 29 29 C 1.40650 * 107.83609 * 359.58021 * 11 10 9 30 30 N 1.30902 * 108.38963 * 0.26356 * 29 11 10 31 31 H 0.97005 * 119.99875 * 0.02562 * 1 2 3 32 32 H 1.07998 * 126.25103 * 359.96811 * 10 9 7 33 33 H 0.97003 * 119.99668 * 359.71688 * 12 11 10 34 34 H 1.00901 * 110.99869 * 300.00472 * 17 15 13 35 35 H 1.00896 * 110.99543 * 63.95595 * 17 15 13 36 36 H 1.09001 * 109.47115 * 304.99584 * 18 15 13 37 37 H 1.09003 * 109.47470 * 64.99668 * 18 15 13 38 38 H 1.08001 * 125.03059 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.10679 * 0.04254 * 24 23 21 40 40 H 1.08004 * 119.66316 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.73575 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.11612 * 180.02562 * 27 26 25 43 43 H 1.08006 * 125.80918 * 180.22364 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3463 0.0006 5 1 1.8883 2.3963 -1.2125 6 1 1.8882 2.3964 1.2124 7 6 2.0079 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8748 -3.6405 0.0072 11 6 0.8576 -4.5384 0.0019 12 7 0.9887 -5.9382 0.0027 13 6 -0.1105 -6.7181 0.0027 14 8 -1.2130 -6.2123 0.0014 15 6 0.0302 -8.2185 0.0030 16 1 0.8481 -8.5070 -0.6573 17 7 -1.2198 -8.8277 -0.4708 18 6 0.3269 -8.7026 1.4238 19 6 0.5888 -10.1865 1.4044 20 6 -0.3047 -11.1584 1.6479 21 7 0.2957 -12.3827 1.5356 22 1 -0.1488 -13.2353 1.6643 23 6 1.6262 -12.2243 1.2187 24 6 2.6712 -13.1161 0.9990 25 6 3.9256 -12.6375 0.6912 26 6 4.1593 -11.2723 0.5970 27 6 3.1475 -10.3788 0.8089 28 6 1.8684 -10.8420 1.1231 29 6 -0.3514 -3.8198 0.0014 30 7 -0.0717 -2.5410 0.0006 31 1 -0.4850 0.8401 -0.0004 32 1 2.9299 -3.8710 0.0130 33 1 1.8704 -6.3427 0.0034 34 1 -1.9938 -8.5751 0.1252 35 1 -1.4044 -8.5745 -1.4299 36 1 1.2048 -8.1837 1.8085 37 1 -0.5291 -8.4931 2.0652 38 1 -1.3440 -10.9976 1.8937 39 1 2.4993 -14.1800 1.0692 40 1 4.7355 -13.3315 0.5206 41 1 5.1489 -10.9136 0.3552 42 1 3.3366 -9.3181 0.7335 43 1 -1.3422 -4.2498 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580056389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:02 Heat of formation + Delta-G solvation = 104.908250 kcal Electronic energy + Delta-G solvation = -27694.643584 eV Core-core repulsion = 23741.884633 eV Total energy + Delta-G solvation = -3952.758952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36898 -39.98254 -38.81384 -37.03632 -35.24132 -34.22562 -33.12422 -32.21528 -30.23815 -29.98017 -29.32550 -28.22595 -27.14475 -25.04584 -23.54383 -22.92686 -21.86649 -20.96973 -20.02997 -19.47691 -19.39214 -17.92947 -17.56522 -16.58400 -16.50621 -16.01798 -15.58516 -15.45033 -15.21995 -14.55333 -14.44284 -14.22469 -14.18659 -13.95499 -13.69989 -13.49962 -13.13768 -12.91753 -12.76886 -12.39157 -12.10154 -11.82745 -11.68698 -11.63769 -11.42144 -11.30861 -11.25518 -10.95153 -10.84470 -10.50839 -10.16052 -9.74197 -9.59434 -9.16683 -8.82543 -8.55038 -8.30785 -8.05409 -7.70283 -6.68886 -6.55499 -4.22267 1.03215 1.52614 2.56583 2.84723 3.01091 3.04546 3.05352 3.11256 3.64653 3.68600 3.81770 3.90749 4.42839 4.52055 4.60218 4.72086 4.76897 4.89301 4.97843 5.02570 5.12986 5.19931 5.25436 5.33168 5.36031 5.50247 5.64169 5.78333 5.82433 5.91448 6.08377 6.25239 6.37456 6.46286 6.50732 6.61824 6.71729 6.89363 6.95506 7.05368 7.08434 7.14615 7.25098 7.41239 7.43842 7.86702 8.18239 8.30077 8.63324 8.85553 9.38748 9.67854 10.40628 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.002167 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.326343 B =12920.171001 C =14010.466491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.045 3.955 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.143 5.143 10 C -0.084 4.084 11 C -0.061 4.061 12 N -0.620 5.620 13 C 0.463 3.537 14 O -0.543 6.543 15 C 0.087 3.913 16 H 0.098 0.902 17 N -0.815 5.815 18 C -0.031 4.031 19 C -0.150 4.150 20 C 0.069 3.931 21 N -0.598 5.598 22 H 0.413 0.587 23 C 0.094 3.906 24 C -0.133 4.133 25 C -0.103 4.103 26 C -0.150 4.150 27 C -0.070 4.070 28 C -0.099 4.099 29 C -0.034 4.034 30 N -0.261 5.261 31 H 0.274 0.726 32 H 0.145 0.855 33 H 0.397 0.603 34 H 0.346 0.654 35 H 0.343 0.657 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.168 0.832 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -23.812 2.436 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.235 4.235 11 C -0.167 4.167 12 N -0.262 5.262 13 C 0.248 3.752 14 O -0.421 6.421 15 C -0.029 4.029 16 H 0.115 0.885 17 N -0.343 5.343 18 C -0.070 4.070 19 C -0.156 4.156 20 C -0.057 4.057 21 N -0.200 5.200 22 H 0.249 0.751 23 C -0.013 4.013 24 C -0.154 4.154 25 C -0.123 4.123 26 C -0.169 4.169 27 C -0.089 4.089 28 C -0.104 4.104 29 C -0.209 4.209 30 N -0.092 5.092 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.229 0.771 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.185 0.815 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.635 -22.910 2.590 23.341 hybrid contribution 0.731 0.231 -0.140 0.779 sum 4.366 -22.679 2.449 23.225 Atomic orbital electron populations 1.70230 1.06131 1.27839 1.35512 1.25649 0.95710 1.00285 0.95516 0.85765 0.79642 0.80283 0.78466 1.18677 1.19926 1.19922 1.19913 0.91664 0.80549 1.53361 0.86587 1.44554 1.04025 1.03319 1.39181 1.21286 0.96868 0.85421 1.19939 1.17329 0.94218 0.81594 1.23566 1.42676 1.08429 1.04525 1.70569 1.21853 0.84715 0.90410 0.78261 1.90587 1.25951 1.75053 1.50538 1.21456 0.95492 0.87587 0.98378 0.88450 1.59168 1.04704 1.62599 1.07832 1.19822 1.02325 0.90571 0.94258 1.19880 0.91466 0.94195 1.10109 1.21544 0.98113 0.82874 1.03140 1.41718 1.07627 1.08215 1.62475 0.75071 1.18236 0.84891 0.95055 1.03131 1.19989 0.91619 0.97816 1.05989 1.20764 0.95741 0.95646 1.00107 1.20620 0.99124 0.93102 1.04046 1.20315 0.90945 0.99684 0.97950 1.19112 0.93920 0.91916 1.05435 1.24078 0.97993 0.90756 1.08092 1.78247 0.90165 1.15111 1.25686 0.91542 0.83728 0.77057 0.84007 0.84468 0.90333 0.90595 0.81516 0.86654 0.86104 0.86191 0.86068 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.67 11.81 55.50 0.66 -21.01 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.93 19.01 29.55 -169.99 -5.02 13.99 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.32 -8.57 10.25 -14.81 -0.15 -8.73 16 8 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 9 N -0.14 -3.95 3.74 -11.41 -0.04 -3.99 16 10 C -0.08 -1.99 11.49 -16.39 -0.19 -2.17 16 11 C -0.06 -1.41 6.90 -83.84 -0.58 -1.98 16 12 N -0.62 -10.74 5.47 -10.00 -0.05 -10.80 16 13 C 0.46 7.68 7.04 -10.99 -0.08 7.60 16 14 O -0.54 -11.08 13.40 5.54 0.07 -11.01 16 15 C 0.09 1.05 3.14 -68.86 -0.22 0.83 16 16 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 17 N -0.81 -9.19 8.70 -5.65 -0.05 -9.24 16 18 C -0.03 -0.34 5.38 -27.89 -0.15 -0.49 16 19 C -0.15 -1.60 5.30 -102.71 -0.54 -2.14 16 20 C 0.07 0.62 11.73 -16.73 -0.20 0.43 16 21 N -0.60 -4.94 6.07 -10.65 -0.06 -5.00 16 22 H 0.41 2.15 8.96 -40.82 -0.37 1.79 16 23 C 0.09 0.96 7.28 -83.99 -0.61 0.35 16 24 C -0.13 -1.20 10.08 -39.43 -0.40 -1.59 16 25 C -0.10 -0.89 10.01 -39.54 -0.40 -1.29 16 26 C -0.15 -1.38 9.97 -39.94 -0.40 -1.78 16 27 C -0.07 -0.73 10.05 -39.64 -0.40 -1.13 16 28 C -0.10 -1.11 6.35 -105.14 -0.67 -1.78 16 29 C -0.03 -0.89 10.85 -17.04 -0.18 -1.08 16 30 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 33 H 0.40 5.34 8.83 -40.82 -0.36 4.98 16 34 H 0.35 3.98 8.58 -39.29 -0.34 3.65 16 35 H 0.34 3.92 9.06 -39.29 -0.36 3.56 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 40 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.17 4.54 5.92 -52.48 -0.31 4.23 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -34.93 372.04 -8.91 -43.84 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -5.08 Total: 18.80 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -5.25 Total: -13.86 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.76 Total: -57.36 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.93 -8.91 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580056389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.750 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds