Wall clock time and date at job start Sat Apr 11 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86802 * 120.00211 * 2 1 4 4 H 1.48505 * 109.47021 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46859 * 299.99661 * 3 2 1 6 6 H 1.48494 * 109.47105 * 59.99557 * 3 2 1 7 7 C 1.38992 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99896 * 180.02562 * 7 2 1 9 9 N 1.37320 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.36494 * 126.06574 * 180.32211 * 9 7 2 11 11 C 1.35678 * 107.50643 * 180.12217 * 10 9 7 12 12 N 1.40595 * 126.08602 * 179.84242 * 11 10 9 13 13 C 1.34779 * 120.00588 * 179.71519 * 12 11 10 14 14 O 1.21302 * 119.99613 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99940 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.47556 * 320.00134 * 15 13 12 17 17 N 1.46905 * 109.46910 * 200.00173 * 15 13 12 18 18 C 1.52998 * 109.47049 * 80.00455 * 15 13 12 19 19 C 1.50698 * 109.47017 * 184.99831 * 18 15 13 20 20 C 1.34245 * 126.50131 * 264.68520 * 19 18 15 21 21 N 1.36826 * 109.92803 * 179.83230 * 20 19 18 22 22 H 0.97004 * 125.06353 * 180.18192 * 21 20 19 23 23 C 1.37686 * 109.87496 * 0.44923 * 21 20 19 24 24 C 1.39129 * 133.50833 * 179.71492 * 23 21 20 25 25 C 1.37745 * 119.77884 * 180.02562 * 24 23 21 26 26 C 1.38828 * 120.66950 * 359.97438 * 25 24 23 27 27 C 1.36634 * 120.52619 * 0.02562 * 26 25 24 28 28 C 1.39623 * 119.75962 * 0.02562 * 27 26 25 29 29 C 1.40650 * 107.83609 * 359.58021 * 11 10 9 30 30 N 1.30902 * 108.38963 * 0.26356 * 29 11 10 31 31 H 0.97005 * 119.99875 * 0.02562 * 1 2 3 32 32 H 1.07998 * 126.25103 * 359.96811 * 10 9 7 33 33 H 0.97003 * 119.99668 * 359.71688 * 12 11 10 34 34 H 1.00901 * 110.99869 * 300.00472 * 17 15 13 35 35 H 1.00896 * 110.99543 * 63.95595 * 17 15 13 36 36 H 1.09001 * 109.47115 * 304.99584 * 18 15 13 37 37 H 1.09003 * 109.47470 * 64.99668 * 18 15 13 38 38 H 1.08001 * 125.03059 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.10679 * 0.04254 * 24 23 21 40 40 H 1.08004 * 119.66316 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.73575 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.11612 * 180.02562 * 27 26 25 43 43 H 1.08006 * 125.80918 * 180.22364 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3463 0.0006 5 1 1.8883 2.3963 -1.2125 6 1 1.8882 2.3964 1.2124 7 6 2.0079 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8748 -3.6405 0.0072 11 6 0.8576 -4.5384 0.0019 12 7 0.9887 -5.9382 0.0027 13 6 -0.1105 -6.7181 0.0027 14 8 -1.2130 -6.2123 0.0014 15 6 0.0302 -8.2185 0.0030 16 1 0.8481 -8.5070 -0.6573 17 7 -1.2198 -8.8277 -0.4708 18 6 0.3269 -8.7026 1.4238 19 6 0.5888 -10.1865 1.4044 20 6 -0.3047 -11.1584 1.6479 21 7 0.2957 -12.3827 1.5356 22 1 -0.1488 -13.2353 1.6643 23 6 1.6262 -12.2243 1.2187 24 6 2.6712 -13.1161 0.9990 25 6 3.9256 -12.6375 0.6912 26 6 4.1593 -11.2723 0.5970 27 6 3.1475 -10.3788 0.8089 28 6 1.8684 -10.8420 1.1231 29 6 -0.3514 -3.8198 0.0014 30 7 -0.0717 -2.5410 0.0006 31 1 -0.4850 0.8401 -0.0004 32 1 2.9299 -3.8710 0.0130 33 1 1.8704 -6.3427 0.0034 34 1 -1.9938 -8.5751 0.1252 35 1 -1.4044 -8.5745 -1.4299 36 1 1.2048 -8.1837 1.8085 37 1 -0.5291 -8.4931 2.0652 38 1 -1.3440 -10.9976 1.8937 39 1 2.4993 -14.1800 1.0692 40 1 4.7355 -13.3315 0.5206 41 1 5.1489 -10.9136 0.3552 42 1 3.3366 -9.3181 0.7335 43 1 -1.3422 -4.2498 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580056389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:01 Heat of formation + Delta-G solvation = 79.973343 kcal Electronic energy + Delta-G solvation = -27695.724843 eV Core-core repulsion = 23741.884633 eV Total energy + Delta-G solvation = -3953.840210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07670 -41.69589 -40.40825 -37.70752 -36.33725 -35.86553 -34.92971 -32.99792 -32.22743 -30.73624 -30.02634 -29.82771 -28.25495 -26.84048 -24.78421 -23.60184 -22.83384 -22.54181 -21.54672 -21.11251 -20.24559 -19.34226 -18.61673 -17.97393 -17.42046 -17.31127 -17.00504 -16.68227 -16.23531 -15.88248 -15.75336 -15.31744 -15.21156 -14.95123 -14.92509 -14.78621 -14.64561 -14.42044 -13.55811 -13.50570 -13.33408 -13.22631 -12.95256 -12.86436 -12.83106 -12.58198 -12.39031 -12.08157 -12.03049 -11.83843 -11.58112 -11.02713 -11.01294 -10.80694 -10.38069 -10.09802 -9.70074 -9.00123 -8.51769 -8.47065 -8.39912 -6.23780 0.35090 0.83117 1.20482 1.39891 1.49753 1.58939 1.82839 1.94125 2.08003 2.35503 2.41984 2.54377 2.93585 3.09129 3.11757 3.56525 3.89042 3.96941 4.04546 4.21474 4.28170 4.32772 4.42649 4.46912 4.57671 4.60617 4.62069 4.78935 4.93255 5.00634 5.01790 5.09312 5.11181 5.16633 5.30362 5.37358 5.50142 5.70098 5.83073 5.92521 5.96664 5.99745 6.07528 6.32625 6.38678 6.46727 6.74475 6.78082 6.84991 7.39859 7.47865 7.69282 8.52659 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.002167 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.326343 B =12920.171001 C =14010.466491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.353 4.353 8 H 0.141 0.859 9 N -0.169 5.169 10 C -0.083 4.083 11 C -0.044 4.044 12 N -0.613 5.613 13 C 0.465 3.535 14 O -0.581 6.581 15 C 0.107 3.893 16 H 0.111 0.889 17 N -0.805 5.805 18 C -0.023 4.023 19 C -0.173 4.173 20 C 0.076 3.924 21 N -0.589 5.589 22 H 0.427 0.573 23 C 0.075 3.925 24 C -0.138 4.138 25 C -0.110 4.110 26 C -0.156 4.156 27 C -0.091 4.091 28 C -0.122 4.122 29 C -0.060 4.060 30 N -0.311 5.311 31 H 0.276 0.724 32 H 0.187 0.813 33 H 0.418 0.582 34 H 0.347 0.653 35 H 0.344 0.656 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.188 0.812 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 -25.700 2.497 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.163 1.163 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.158 0.842 9 N 0.062 4.938 10 C -0.233 4.233 11 C -0.151 4.151 12 N -0.258 5.258 13 C 0.251 3.749 14 O -0.461 6.461 15 C -0.010 4.010 16 H 0.129 0.871 17 N -0.333 5.333 18 C -0.062 4.062 19 C -0.179 4.179 20 C -0.051 4.051 21 N -0.192 5.192 22 H 0.266 0.734 23 C -0.032 4.032 24 C -0.159 4.159 25 C -0.129 4.129 26 C -0.175 4.175 27 C -0.109 4.109 28 C -0.127 4.127 29 C -0.236 4.236 30 N -0.143 5.143 31 H 0.085 0.915 32 H 0.204 0.796 33 H 0.255 0.745 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.205 0.795 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.902 -24.890 2.651 25.717 hybrid contribution 0.012 0.577 -0.155 0.598 sum 5.914 -24.312 2.496 25.145 Atomic orbital electron populations 1.70409 1.08438 1.28980 1.37584 1.26893 0.96492 1.04376 0.94200 0.84533 0.79081 0.74395 0.78173 1.16278 1.19809 1.19795 1.20644 0.92931 0.80894 1.53920 0.84195 1.44841 1.03599 1.04824 1.40549 1.22032 0.98869 0.84282 1.18096 1.17408 0.92650 0.84156 1.20850 1.42686 1.10141 1.02223 1.70767 1.22902 0.83705 0.92208 0.76103 1.90577 1.27553 1.76186 1.51737 1.21455 0.96239 0.83594 0.99706 0.87079 1.59200 1.04521 1.61670 1.07874 1.19714 1.02192 0.91241 0.93031 1.19831 0.91975 0.93946 1.12183 1.21887 0.98768 0.82861 1.01589 1.41729 1.07127 1.08742 1.61612 0.73406 1.18510 0.85832 0.95119 1.03755 1.20313 0.91434 0.98852 1.05293 1.21116 0.96414 0.95926 0.99490 1.20915 0.99656 0.93463 1.03430 1.20534 0.91175 1.00410 0.98827 1.19377 0.94409 0.92701 1.06184 1.24137 0.98999 0.90926 1.09501 1.78138 0.92079 1.16667 1.27447 0.91455 0.79604 0.74517 0.83986 0.84411 0.90254 0.90948 0.79524 0.84575 0.83820 0.84618 0.85442 0.81683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.20 11.81 21.66 0.26 -47.94 16 2 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 3 Si 1.02 38.90 29.55 68.60 2.03 40.93 16 4 H -0.24 -8.17 7.11 99.48 0.71 -7.46 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 6 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.35 -18.81 10.25 84.01 0.86 -17.95 16 8 H 0.14 6.47 7.83 -2.92 -0.02 6.45 16 9 N -0.17 -9.45 3.74 -190.02 -0.71 -10.16 16 10 C -0.08 -3.83 11.49 83.37 0.96 -2.87 16 11 C -0.04 -2.02 6.90 37.73 0.26 -1.76 16 12 N -0.61 -20.56 5.47 -303.93 -1.66 -22.22 16 13 C 0.46 15.10 7.04 87.66 0.62 15.71 16 14 O -0.58 -23.98 13.40 -3.10 -0.04 -24.02 16 15 C 0.11 2.41 3.14 44.17 0.14 2.55 16 16 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 17 N -0.81 -17.10 8.70 -171.80 -1.49 -18.60 16 18 C -0.02 -0.47 5.38 29.85 0.16 -0.31 16 19 C -0.17 -3.41 5.30 -18.62 -0.10 -3.51 16 20 C 0.08 1.22 11.73 83.00 0.97 2.19 16 21 N -0.59 -8.49 6.07 -187.61 -1.14 -9.63 16 22 H 0.43 3.46 8.96 -92.70 -0.83 2.63 16 23 C 0.08 1.41 7.28 39.03 0.28 1.69 16 24 C -0.14 -2.18 10.08 22.37 0.23 -1.95 16 25 C -0.11 -1.66 10.01 22.29 0.22 -1.44 16 26 C -0.16 -2.59 9.97 22.04 0.22 -2.37 16 27 C -0.09 -1.76 10.05 22.23 0.22 -1.53 16 28 C -0.12 -2.57 6.35 -20.20 -0.13 -2.70 16 29 C -0.06 -3.31 10.85 85.42 0.93 -2.38 16 30 N -0.31 -18.95 10.40 -56.46 -0.59 -19.54 16 31 H 0.28 14.75 8.31 -92.70 -0.77 13.98 16 32 H 0.19 6.79 8.06 -2.91 -0.02 6.77 16 33 H 0.42 10.34 8.83 -92.71 -0.82 9.52 16 34 H 0.35 7.63 8.58 -89.69 -0.77 6.86 16 35 H 0.34 7.44 9.06 -89.70 -0.81 6.63 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.17 9.14 5.92 -2.91 -0.02 9.12 16 Total: -1.00 -79.17 372.04 0.84 -78.33 By element: Atomic # 1 Polarization: 51.59 SS G_CDS: -2.12 Total: 49.47 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 6.31 Total: -16.61 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -5.34 Total: -128.10 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.02 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -79.17 0.84 -78.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580056389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.302 kcal (2) G-P(sol) polarization free energy of solvation -79.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds