Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00199 * 2 1 4 4 C 1.50704 * 109.47043 * 184.91768 * 3 2 1 5 5 N 1.30940 * 122.89854 * 271.80443 * 4 3 2 6 6 C 1.29433 * 117.35836 * 180.35026 * 5 4 3 7 7 S 1.70947 * 110.39289 * 359.70694 * 6 5 4 8 8 C 1.35655 * 122.90553 * 91.61289 * 4 3 2 9 9 C 1.46683 * 126.13163 * 359.95995 * 8 4 3 10 10 O 1.21683 * 120.00111 * 4.37064 * 9 8 4 11 11 N 1.34777 * 119.99813 * 184.36500 * 9 8 4 12 12 C 1.46501 * 119.99795 * 185.26739 * 11 9 8 13 13 C 1.53002 * 110.02092 * 62.85950 * 12 11 9 14 14 N 1.46495 * 109.46808 * 53.21548 * 13 12 11 15 15 C 1.36944 * 119.99592 * 174.91059 * 14 13 12 16 16 H 1.07989 * 120.00175 * 5.05204 * 15 14 13 17 17 C 1.38815 * 119.99602 * 185.05639 * 15 14 13 18 18 N 1.31619 * 120.00268 * 354.62866 * 17 15 14 19 19 Si 1.86798 * 119.99663 * 174.90165 * 17 15 14 20 20 H 1.48499 * 109.47155 * 59.99960 * 19 17 15 21 21 H 1.48509 * 109.46978 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47467 * 299.99925 * 19 17 15 23 23 C 1.54266 * 110.03049 * 184.25271 * 12 11 9 24 24 C 1.54963 * 104.16038 * 95.75331 * 23 12 11 25 25 C 1.54888 * 102.77899 * 37.88804 * 24 23 12 26 26 C 1.53879 * 110.03052 * 301.46753 * 12 11 9 27 27 H 1.09001 * 109.47289 * 304.95109 * 1 2 3 28 28 H 1.09004 * 109.47237 * 64.95666 * 1 2 3 29 29 H 1.09005 * 109.47331 * 184.95429 * 1 2 3 30 30 H 1.08994 * 109.47203 * 64.91012 * 3 2 1 31 31 H 1.09003 * 109.46384 * 304.91071 * 3 2 1 32 32 H 1.07999 * 124.80167 * 179.72672 * 6 5 4 33 33 H 0.96992 * 120.00538 * 5.26402 * 11 9 8 34 34 H 1.09006 * 109.46761 * 293.21965 * 13 12 11 35 35 H 1.08995 * 109.47431 * 173.22211 * 13 12 11 36 36 H 0.97003 * 120.00353 * 354.90823 * 14 13 12 37 37 H 0.96994 * 120.00201 * 185.00688 * 18 17 15 38 38 H 1.09006 * 110.48481 * 214.39533 * 23 12 11 39 39 H 1.08993 * 110.48903 * 337.04327 * 23 12 11 40 40 H 1.08998 * 110.72175 * 279.57332 * 24 23 12 41 41 H 1.09002 * 110.76672 * 156.21828 * 24 23 12 42 42 H 1.09007 * 110.48813 * 203.40781 * 25 24 23 43 43 H 1.08998 * 110.49041 * 80.76340 * 25 24 23 44 44 H 1.08999 * 110.03411 * 359.95428 * 26 12 11 45 45 H 1.09004 * 110.03340 * 121.38505 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5078 1.1885 -0.1218 5 7 4.2978 1.0605 0.9146 6 6 5.5690 0.9758 0.6865 7 16 5.8793 1.0508 -0.9929 8 6 4.1535 1.2030 -1.3147 9 6 3.5278 1.3290 -2.6354 10 8 2.3284 1.5133 -2.7254 11 7 4.2815 1.2409 -3.7493 12 6 3.6784 1.4812 -5.0626 13 6 3.1704 2.9217 -5.1501 14 7 4.2532 3.8435 -4.7983 15 6 4.0638 5.1955 -4.9067 16 1 3.0924 5.5850 -5.1728 17 6 5.1206 6.0651 -4.6748 18 7 6.2752 5.5989 -4.2484 19 14 4.9017 7.8981 -4.9607 20 1 3.8172 8.4097 -4.0848 21 1 6.1691 8.6036 -4.6421 22 1 4.5448 8.1383 -6.3820 23 6 4.7135 1.2174 -6.1756 24 6 4.4329 -0.2415 -6.6163 25 6 2.8881 -0.3294 -6.5463 26 6 2.5183 0.4979 -5.2978 27 1 -0.3634 0.5887 0.8423 28 1 -0.3634 0.4350 -0.9311 29 1 -0.3634 -1.0239 0.0888 30 1 1.7599 1.8146 0.9306 31 1 1.6207 1.8765 -0.8428 32 1 6.3265 0.8721 1.4493 33 1 5.2231 1.0184 -3.6815 34 1 2.3392 3.0565 -4.4578 35 1 2.8339 3.1273 -6.1662 36 1 5.1044 3.4963 -4.4885 37 1 6.9903 6.2120 -4.0170 38 1 4.5610 1.9034 -7.0088 39 1 5.7266 1.3103 -5.7843 40 1 4.8917 -0.9483 -5.9250 41 1 4.7836 -0.4120 -7.6342 42 1 2.5699 -1.3649 -6.4256 43 1 2.4402 0.1067 -7.4392 44 1 2.4046 -0.1585 -4.4351 45 1 1.5934 1.0470 -5.4742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665952386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = -19.785531 kcal Electronic energy + Delta-G solvation = -28465.945602 eV Core-core repulsion = 24610.930722 eV Total energy + Delta-G solvation = -3855.014880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49366 -39.60731 -37.49605 -37.32535 -34.32976 -33.26346 -31.45505 -30.89971 -28.73551 -28.51861 -27.46469 -26.05753 -24.51012 -24.48654 -22.31535 -21.97194 -20.66928 -19.28426 -19.20605 -18.37012 -17.09696 -16.78536 -16.42001 -15.95572 -15.49739 -15.22710 -15.08615 -14.79103 -14.65783 -14.45211 -14.02032 -13.79477 -13.60340 -13.19204 -12.97747 -12.90267 -12.71596 -12.25586 -11.93076 -11.60347 -11.48402 -11.30985 -11.13029 -10.96111 -10.90169 -10.81682 -10.70856 -10.47440 -10.40855 -10.07886 -9.94881 -9.74034 -9.70726 -9.47656 -9.27676 -8.97967 -8.80158 -8.63421 -6.86756 -5.74025 -3.01865 0.28181 1.20610 1.58177 2.43239 3.27932 3.41913 3.45122 3.49304 3.50526 3.91557 4.35606 4.58230 4.69148 4.83813 4.96851 4.98208 5.05875 5.17139 5.34323 5.46023 5.52744 5.56172 5.59118 5.64954 5.68860 5.70100 5.73913 5.79653 5.86864 5.96734 6.02882 6.07449 6.19661 6.28702 6.37844 6.49724 6.53952 6.56520 6.85815 7.04671 7.18298 7.56636 7.72869 7.77053 8.44311 8.44945 9.55873 10.13439 10.49637 11.47923 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.004702 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.156579 B = 5952.934012 C = 7230.742117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.383 6.383 3 C 0.127 3.873 4 C 0.130 3.870 5 N -0.464 5.464 6 C 0.021 3.979 7 S 0.187 5.813 8 C -0.258 4.258 9 C 0.605 3.395 10 O -0.514 6.514 11 N -0.703 5.703 12 C 0.170 3.830 13 C 0.146 3.854 14 N -0.726 5.726 15 C -0.234 4.234 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.935 5.935 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.117 4.117 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.205 0.795 33 H 0.394 0.606 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.381 0.619 37 H 0.254 0.746 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -15.531 4.334 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.301 6.301 3 C 0.049 3.951 4 C -0.008 4.008 5 N -0.178 5.178 6 C -0.275 4.275 7 S 0.442 5.558 8 C -0.383 4.383 9 C 0.390 3.610 10 O -0.392 6.392 11 N -0.353 5.353 12 C 0.085 3.915 13 C 0.018 3.982 14 N -0.370 5.370 15 C -0.365 4.365 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.584 5.584 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.155 4.155 24 C -0.163 4.163 25 C -0.162 4.162 26 C -0.155 4.155 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.222 0.778 33 H 0.228 0.772 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.215 0.785 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.769 -15.443 4.120 16.221 hybrid contribution -0.141 1.324 0.395 1.389 sum -2.910 -14.119 4.515 15.106 Atomic orbital electron populations 1.22700 0.80725 1.02303 1.00349 1.87852 1.19796 1.26929 1.95559 1.21093 0.85419 0.85913 1.02704 1.20145 0.96903 0.98229 0.85529 1.65999 1.02734 1.15412 1.33632 1.28617 0.96249 1.03054 0.99545 1.84029 1.04227 1.63126 1.04401 1.25746 0.96684 1.16349 0.99505 1.16451 0.86300 0.76494 0.81774 1.90728 1.13675 1.48824 1.85923 1.45933 1.12536 1.71085 1.05787 1.21327 0.93116 0.96192 0.80900 1.21147 0.92625 0.86414 0.98055 1.42205 1.12811 1.02132 1.79880 1.19185 0.94982 0.82840 1.39509 0.91408 1.24688 0.95654 0.97825 1.02689 1.69621 1.04200 1.33488 1.51070 0.86304 0.76531 0.85608 0.77994 1.21440 1.21762 1.21323 1.22609 0.98420 0.96443 0.98062 1.22552 0.96043 0.96784 1.00939 1.22392 0.95887 0.99628 0.98322 1.22422 0.98026 0.97321 0.97774 0.94229 0.93467 0.89905 0.92028 0.88284 0.77824 0.77202 0.94829 0.95201 0.78530 0.93613 0.89422 0.90990 0.91835 0.91572 0.92024 0.91569 0.91115 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -5.99 10.69 -35.23 -0.38 -6.37 16 3 C 0.13 2.03 5.85 36.01 0.21 2.24 16 4 C 0.13 2.17 6.42 -83.89 -0.54 1.63 16 5 N -0.46 -7.09 10.50 -11.53 -0.12 -7.21 16 6 C 0.02 0.25 12.22 51.75 0.63 0.88 16 7 S 0.19 2.36 22.39 -107.50 -2.41 -0.04 16 8 C -0.26 -4.24 6.47 -37.10 -0.24 -4.48 16 9 C 0.61 10.81 6.93 -12.85 -0.09 10.72 16 10 O -0.51 -10.11 11.44 5.20 0.06 -10.05 16 11 N -0.70 -11.40 4.39 -47.86 -0.21 -11.61 16 12 C 0.17 2.78 0.58 -130.70 -0.08 2.71 16 13 C 0.15 3.04 4.60 -4.04 -0.02 3.02 16 14 N -0.73 -18.11 5.29 -59.91 -0.32 -18.42 16 15 C -0.23 -6.57 9.98 -15.06 -0.15 -6.72 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 19 Si 0.90 22.57 29.56 -169.99 -5.02 17.55 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.12 -1.70 5.83 -25.03 -0.15 -1.84 16 24 C -0.13 -1.45 6.91 -24.70 -0.17 -1.62 16 25 C -0.12 -1.47 6.83 -25.07 -0.17 -1.64 16 26 C -0.12 -1.70 5.16 -25.61 -0.13 -1.83 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.71 5.82 -51.93 -0.30 1.40 16 32 H 0.21 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.39 5.70 7.45 -40.82 -0.30 5.40 16 34 H 0.03 0.78 6.79 -51.93 -0.35 0.42 16 35 H 0.03 0.62 7.99 -51.93 -0.42 0.21 16 36 H 0.38 9.76 7.18 -40.82 -0.29 9.47 16 37 H 0.25 7.34 8.32 -40.82 -0.34 7.00 16 38 H 0.09 1.37 7.75 -51.93 -0.40 0.97 16 39 H 0.07 1.04 7.71 -51.93 -0.40 0.64 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.10 6.93 -51.93 -0.36 0.74 16 45 H 0.07 1.12 7.67 -51.93 -0.40 0.72 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -33.54 377.57 -8.43 -41.97 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.58 Total: 11.31 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 0.13 Total: 4.14 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: 0.08 Total: -64.19 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.32 Total: -16.42 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.41 Total: -0.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.54 -8.43 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665952386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.186 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds