Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00199 * 2 1 4 4 C 1.50704 * 109.47043 * 184.91768 * 3 2 1 5 5 N 1.30940 * 122.89854 * 271.80443 * 4 3 2 6 6 C 1.29433 * 117.35836 * 180.35026 * 5 4 3 7 7 S 1.70947 * 110.39289 * 359.70694 * 6 5 4 8 8 C 1.35655 * 122.90553 * 91.61289 * 4 3 2 9 9 C 1.46683 * 126.13163 * 359.95995 * 8 4 3 10 10 O 1.21683 * 120.00111 * 4.37064 * 9 8 4 11 11 N 1.34777 * 119.99813 * 184.36500 * 9 8 4 12 12 C 1.46501 * 119.99795 * 185.26739 * 11 9 8 13 13 C 1.53002 * 110.02092 * 62.85950 * 12 11 9 14 14 N 1.46495 * 109.46808 * 53.21548 * 13 12 11 15 15 C 1.36944 * 119.99592 * 174.91059 * 14 13 12 16 16 H 1.07989 * 120.00175 * 5.05204 * 15 14 13 17 17 C 1.38815 * 119.99602 * 185.05639 * 15 14 13 18 18 N 1.31619 * 120.00268 * 354.62866 * 17 15 14 19 19 Si 1.86798 * 119.99663 * 174.90165 * 17 15 14 20 20 H 1.48499 * 109.47155 * 59.99960 * 19 17 15 21 21 H 1.48509 * 109.46978 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47467 * 299.99925 * 19 17 15 23 23 C 1.54266 * 110.03049 * 184.25271 * 12 11 9 24 24 C 1.54963 * 104.16038 * 95.75331 * 23 12 11 25 25 C 1.54888 * 102.77899 * 37.88804 * 24 23 12 26 26 C 1.53879 * 110.03052 * 301.46753 * 12 11 9 27 27 H 1.09001 * 109.47289 * 304.95109 * 1 2 3 28 28 H 1.09004 * 109.47237 * 64.95666 * 1 2 3 29 29 H 1.09005 * 109.47331 * 184.95429 * 1 2 3 30 30 H 1.08994 * 109.47203 * 64.91012 * 3 2 1 31 31 H 1.09003 * 109.46384 * 304.91071 * 3 2 1 32 32 H 1.07999 * 124.80167 * 179.72672 * 6 5 4 33 33 H 0.96992 * 120.00538 * 5.26402 * 11 9 8 34 34 H 1.09006 * 109.46761 * 293.21965 * 13 12 11 35 35 H 1.08995 * 109.47431 * 173.22211 * 13 12 11 36 36 H 0.97003 * 120.00353 * 354.90823 * 14 13 12 37 37 H 0.96994 * 120.00201 * 185.00688 * 18 17 15 38 38 H 1.09006 * 110.48481 * 214.39533 * 23 12 11 39 39 H 1.08993 * 110.48903 * 337.04327 * 23 12 11 40 40 H 1.08998 * 110.72175 * 279.57332 * 24 23 12 41 41 H 1.09002 * 110.76672 * 156.21828 * 24 23 12 42 42 H 1.09007 * 110.48813 * 203.40781 * 25 24 23 43 43 H 1.08998 * 110.49041 * 80.76340 * 25 24 23 44 44 H 1.08999 * 110.03411 * 359.95428 * 26 12 11 45 45 H 1.09004 * 110.03340 * 121.38505 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5078 1.1885 -0.1218 5 7 4.2978 1.0605 0.9146 6 6 5.5690 0.9758 0.6865 7 16 5.8793 1.0508 -0.9929 8 6 4.1535 1.2030 -1.3147 9 6 3.5278 1.3290 -2.6354 10 8 2.3284 1.5133 -2.7254 11 7 4.2815 1.2409 -3.7493 12 6 3.6784 1.4812 -5.0626 13 6 3.1704 2.9217 -5.1501 14 7 4.2532 3.8435 -4.7983 15 6 4.0638 5.1955 -4.9067 16 1 3.0924 5.5850 -5.1728 17 6 5.1206 6.0651 -4.6748 18 7 6.2752 5.5989 -4.2484 19 14 4.9017 7.8981 -4.9607 20 1 3.8172 8.4097 -4.0848 21 1 6.1691 8.6036 -4.6421 22 1 4.5448 8.1383 -6.3820 23 6 4.7135 1.2174 -6.1756 24 6 4.4329 -0.2415 -6.6163 25 6 2.8881 -0.3294 -6.5463 26 6 2.5183 0.4979 -5.2978 27 1 -0.3634 0.5887 0.8423 28 1 -0.3634 0.4350 -0.9311 29 1 -0.3634 -1.0239 0.0888 30 1 1.7599 1.8146 0.9306 31 1 1.6207 1.8765 -0.8428 32 1 6.3265 0.8721 1.4493 33 1 5.2231 1.0184 -3.6815 34 1 2.3392 3.0565 -4.4578 35 1 2.8339 3.1273 -6.1662 36 1 5.1044 3.4963 -4.4885 37 1 6.9903 6.2120 -4.0170 38 1 4.5610 1.9034 -7.0088 39 1 5.7266 1.3103 -5.7843 40 1 4.8917 -0.9483 -5.9250 41 1 4.7836 -0.4120 -7.6342 42 1 2.5699 -1.3649 -6.4256 43 1 2.4402 0.1067 -7.4392 44 1 2.4046 -0.1585 -4.4351 45 1 1.5934 1.0470 -5.4742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665952386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = -44.001677 kcal Electronic energy + Delta-G solvation = -28466.995692 eV Core-core repulsion = 24610.930722 eV Total energy + Delta-G solvation = -3856.064971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.75255 -40.81678 -38.73699 -38.50852 -36.17504 -34.65817 -33.10342 -32.36954 -30.08671 -29.69986 -28.77004 -27.13106 -26.26578 -25.59107 -24.07555 -23.26655 -21.75303 -20.56877 -20.46879 -19.56538 -19.10700 -17.98293 -17.57603 -17.32249 -16.65505 -16.56518 -16.38908 -16.20610 -15.86815 -15.80155 -15.46102 -15.02527 -15.01896 -14.87406 -14.53129 -14.08402 -13.94672 -13.64212 -13.29546 -13.21305 -12.79428 -12.70299 -12.52521 -12.39608 -12.25689 -12.19078 -11.98899 -11.92713 -11.77912 -11.74501 -11.39971 -11.20392 -10.92425 -10.84036 -10.62500 -10.49394 -10.09601 -9.97488 -8.95775 -7.93541 -5.21431 -0.84115 0.12730 0.51422 1.29523 1.45276 1.47137 1.53294 1.96896 2.13093 2.55093 2.83228 3.30384 3.35775 3.49431 3.70027 3.74892 3.87522 3.94165 4.07020 4.17310 4.34870 4.39678 4.45861 4.51268 4.52658 4.56851 4.60578 4.68573 4.79481 4.80772 4.83800 4.92145 4.93804 5.07627 5.10961 5.18801 5.25545 5.34922 5.48040 5.50873 5.64312 6.08273 6.27760 6.39642 6.53358 7.12227 7.35298 8.08452 8.37538 9.27910 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.004702 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.156579 B = 5952.934012 C = 7230.742117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.130 3.870 4 C 0.121 3.879 5 N -0.490 5.490 6 C 0.039 3.961 7 S 0.229 5.771 8 C -0.300 4.300 9 C 0.598 3.402 10 O -0.543 6.543 11 N -0.697 5.697 12 C 0.173 3.827 13 C 0.149 3.851 14 N -0.729 5.729 15 C -0.248 4.248 16 H 0.063 0.937 17 C -0.064 4.064 18 N -0.959 5.959 19 Si 0.966 3.034 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.279 1.279 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.252 0.748 33 H 0.402 0.598 34 H 0.007 0.993 35 H 0.030 0.970 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -16.659 4.337 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.320 6.320 3 C 0.051 3.949 4 C -0.019 4.019 5 N -0.204 5.204 6 C -0.256 4.256 7 S 0.485 5.515 8 C -0.425 4.425 9 C 0.384 3.616 10 O -0.423 6.423 11 N -0.348 5.348 12 C 0.087 3.913 13 C 0.021 3.979 14 N -0.373 5.373 15 C -0.380 4.380 16 H 0.081 0.919 17 C -0.257 4.257 18 N -0.610 5.610 19 Si 0.795 3.205 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.149 4.149 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.268 0.732 33 H 0.238 0.762 34 H 0.025 0.975 35 H 0.048 0.952 36 H 0.209 0.791 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.671 -16.594 4.101 17.174 hybrid contribution -0.497 1.672 0.464 1.805 sum -2.168 -14.922 4.565 15.754 Atomic orbital electron populations 1.22911 0.78948 1.04018 1.00670 1.87816 1.21828 1.26742 1.95624 1.20977 0.85748 0.86039 1.02098 1.20332 0.97379 0.98056 0.86105 1.66051 1.03880 1.17245 1.33259 1.29470 0.96092 0.99622 1.00383 1.83817 1.00983 1.62175 1.04500 1.25721 0.99300 1.18680 0.98760 1.16769 0.86189 0.76007 0.82675 1.90703 1.14912 1.50095 1.86545 1.45880 1.12868 1.70629 1.05443 1.21286 0.94568 0.93631 0.81810 1.21176 0.90986 0.88807 0.96911 1.42261 1.13427 1.01787 1.79776 1.19483 0.94903 0.84484 1.39083 0.91857 1.25394 0.95544 1.01748 1.02975 1.69748 1.04680 1.34542 1.51995 0.85338 0.76276 0.80825 0.78050 1.21273 1.21684 1.20472 1.22574 0.97541 0.98544 0.96676 1.22518 0.95720 0.94447 1.02393 1.22383 0.96215 1.00118 0.96779 1.22334 0.96690 0.96874 0.99043 0.92589 0.94237 0.87709 0.91132 0.90466 0.73238 0.76242 0.97502 0.95196 0.79057 0.93924 0.90745 0.91096 0.90628 0.89440 0.90068 0.90802 0.92118 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -12.81 10.69 -148.98 -1.59 -14.40 16 3 C 0.13 4.31 5.85 71.24 0.42 4.72 16 4 C 0.12 4.06 6.42 42.09 0.27 4.33 16 5 N -0.49 -14.49 10.50 -190.41 -2.00 -16.49 16 6 C 0.04 0.84 12.22 130.60 1.60 2.43 16 7 S 0.23 5.48 22.39 -56.49 -1.26 4.21 16 8 C -0.30 -10.00 6.47 23.88 0.15 -9.84 16 9 C 0.60 22.14 6.93 86.45 0.60 22.73 16 10 O -0.54 -22.63 11.44 -4.29 -0.05 -22.67 16 11 N -0.70 -23.00 4.39 -423.55 -1.86 -24.86 16 12 C 0.17 5.73 0.58 4.33 0.00 5.73 16 13 C 0.15 6.43 4.60 86.38 0.40 6.83 16 14 N -0.73 -37.28 5.29 -343.46 -1.82 -39.10 16 15 C -0.25 -14.15 9.98 84.03 0.84 -13.31 16 16 H 0.06 3.59 7.83 -2.92 -0.02 3.57 16 17 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 18 N -0.96 -57.05 13.06 21.65 0.28 -56.77 16 19 Si 0.97 46.56 29.56 68.60 2.03 48.59 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 C -0.12 -3.24 5.83 31.69 0.18 -3.06 16 24 C -0.11 -2.32 6.91 31.91 0.22 -2.10 16 25 C -0.12 -2.52 6.83 31.67 0.22 -2.31 16 26 C -0.11 -3.23 5.16 31.32 0.16 -3.07 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.86 5.82 -2.39 -0.01 2.85 16 32 H 0.25 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.40 11.60 7.45 -92.71 -0.69 10.91 16 34 H 0.01 0.35 6.79 -2.38 -0.02 0.33 16 35 H 0.03 1.29 7.99 -2.39 -0.02 1.27 16 36 H 0.38 19.68 7.18 -92.71 -0.67 19.02 16 37 H 0.25 14.55 8.32 -92.71 -0.77 13.78 16 38 H 0.07 2.30 7.75 -2.38 -0.02 2.28 16 39 H 0.07 2.00 7.71 -2.39 -0.02 1.98 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.90 6.93 -2.39 -0.02 1.89 16 45 H 0.06 1.88 7.67 -2.38 -0.02 1.86 16 Total: -1.00 -73.87 377.57 0.17 -73.70 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: -0.33 Total: 35.92 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.77 Total: 11.87 kcal Atomic # 7 Polarization: -131.82 SS G_CDS: -5.39 Total: -137.22 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -1.64 Total: -37.07 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -1.26 Total: 4.21 kcal Total: -73.87 0.17 -73.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665952386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.695 kcal (2) G-P(sol) polarization free energy of solvation -73.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds