Wall clock time and date at job start Sat Apr 11 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86804 * 119.99642 * 2 1 4 4 H 1.48499 * 109.46989 * 239.99921 * 3 2 1 5 5 H 1.48497 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46803 * 120.00164 * 3 2 1 7 7 C 1.38789 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00562 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.81009 * 99.99732 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46682 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00191 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99900 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00191 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47293 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.84791 * 314.66879 * 15 14 13 17 17 C 1.53781 * 113.61570 * 85.86417 * 15 14 13 18 18 C 1.54046 * 86.98297 * 89.16158 * 17 15 14 19 19 H 1.08997 * 113.69386 * 270.87157 * 18 17 15 20 20 N 1.46907 * 113.61617 * 139.97687 * 18 17 15 21 21 C 1.46904 * 110.99645 * 107.50649 * 20 18 17 22 22 C 1.52999 * 109.46802 * 179.97438 * 21 20 18 23 23 N 1.46505 * 109.47108 * 179.97438 * 22 21 20 24 24 C 1.34430 * 126.82029 * 124.70702 * 23 22 21 25 25 N 1.30835 * 108.07755 * 179.89461 * 24 23 22 26 26 C 1.33244 * 109.82365 * 0.38838 * 25 24 23 27 27 N 1.30711 * 108.95097 * 359.75421 * 26 25 24 28 28 C 1.53780 * 113.61448 * 183.47562 * 15 14 13 29 29 H 0.97005 * 119.99998 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47245 * 60.00238 * 10 9 7 31 31 H 1.09000 * 109.47051 * 299.99833 * 10 9 7 32 32 H 0.97002 * 120.00256 * 0.02562 * 13 11 10 33 33 H 1.09004 * 109.47049 * 60.00361 * 14 13 11 34 34 H 1.09000 * 109.47198 * 300.00034 * 14 13 11 35 35 H 1.09001 * 113.61158 * 203.66754 * 17 15 14 36 36 H 1.08998 * 113.61196 * 334.56775 * 17 15 14 37 37 H 1.00899 * 111.00039 * 231.45263 * 20 18 17 38 38 H 1.09000 * 109.47365 * 299.99860 * 21 20 18 39 39 H 1.09001 * 109.47440 * 59.99807 * 21 20 18 40 40 H 1.09001 * 109.47419 * 299.99646 * 22 21 20 41 41 H 1.09001 * 109.47214 * 59.99750 * 22 21 20 42 42 H 1.07995 * 125.96195 * 0.04404 * 24 23 22 43 43 H 1.08001 * 125.52373 * 179.79587 * 26 25 24 44 44 H 1.08998 * 113.61351 * 25.42709 * 28 15 14 45 45 H 1.08994 * 113.61622 * 156.24946 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8442 -6.3430 -0.0018 14 6 2.3305 -7.7150 -0.0019 15 6 3.5026 -8.6985 -0.0020 16 1 4.2807 -8.4295 -0.7164 17 6 4.0399 -9.0167 1.4033 18 6 3.0101 -10.1614 1.4491 19 1 2.0400 -9.8622 1.8460 20 7 3.5243 -11.3913 2.0666 21 6 2.9341 -11.5996 3.3956 22 6 3.4920 -12.8872 4.0051 23 7 2.9039 -13.0947 5.3308 24 6 2.2428 -14.1848 5.7573 25 7 1.8794 -13.9799 6.9973 26 6 2.2814 -12.7725 7.3924 27 7 2.9135 -12.1919 6.4066 28 6 3.0705 -10.1718 -0.0875 29 1 -0.4850 0.8401 0.0004 30 1 3.1245 -3.7313 0.8894 31 1 3.1246 -3.7313 -0.8905 32 1 3.8010 -6.1834 -0.0015 33 1 1.7215 -7.8749 -0.8916 34 1 1.7223 -7.8753 0.8884 35 1 5.0746 -9.3597 1.4078 36 1 3.8512 -8.2282 2.1318 37 1 3.3638 -12.1895 1.4706 38 1 3.1815 -10.7555 4.0394 39 1 1.8511 -11.6811 3.3035 40 1 3.2442 -13.7312 3.3613 41 1 4.5751 -12.8062 4.0971 42 1 2.0480 -15.0753 5.1782 43 1 2.1128 -12.3435 8.3691 44 1 2.0995 -10.3152 -0.5616 45 1 3.8399 -10.8298 -0.4911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688924407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:01 Heat of formation + Delta-G solvation = 74.741768 kcal Electronic energy + Delta-G solvation = -25042.324136 eV Core-core repulsion = 21223.701019 eV Total energy + Delta-G solvation = -3818.623117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47648 -40.15598 -38.80109 -36.48927 -34.38479 -33.25119 -32.42577 -31.63902 -29.93366 -28.80730 -26.48533 -26.06210 -25.43120 -23.93557 -22.80231 -22.39084 -21.73066 -20.37144 -19.20142 -17.90626 -17.74570 -16.90708 -16.59911 -16.27107 -15.81655 -15.63753 -15.29832 -15.24084 -14.92125 -14.79998 -14.58091 -14.28648 -13.93251 -13.61223 -13.31289 -13.08649 -12.88209 -12.67787 -12.62024 -12.57639 -12.10869 -11.84077 -11.65263 -11.21275 -11.04369 -11.03597 -10.85282 -10.76006 -10.62332 -10.44700 -10.24292 -10.12594 -9.82295 -9.40648 -9.07516 -9.05603 -8.86837 -8.23969 -6.49926 -6.21257 -3.92064 1.17696 1.78160 2.54534 3.02572 3.09824 3.23758 3.27685 3.31132 3.54371 3.68863 3.85863 3.92018 4.08359 4.20827 4.25344 4.36107 4.42004 4.47906 4.50963 4.59442 4.72343 4.92465 5.09845 5.13766 5.17056 5.19612 5.31158 5.37904 5.40923 5.55211 5.58200 5.73808 5.76237 5.79936 5.84714 5.90224 5.98062 6.00243 6.14244 6.30639 6.47347 6.61939 6.74988 7.59442 7.63266 7.71237 8.35253 8.61245 9.23863 10.86098 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.001564 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.280757 B =17898.129555 C =18978.254996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.139 3.861 15 C -0.123 4.123 16 H 0.088 0.912 17 C -0.120 4.120 18 C 0.058 3.942 19 H 0.078 0.922 20 N -0.674 5.674 21 C 0.047 3.953 22 C 0.131 3.869 23 N -0.379 5.379 24 C 0.253 3.747 25 N -0.548 5.548 26 C 0.198 3.802 27 N -0.314 5.314 28 C -0.131 4.131 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.399 0.601 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.341 0.659 38 H 0.090 0.910 39 H 0.037 0.963 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.218 0.782 43 H 0.218 0.782 44 H 0.072 0.928 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.460 -30.901 4.847 32.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.392 5.392 14 C 0.014 3.986 15 C -0.143 4.143 16 H 0.106 0.894 17 C -0.159 4.159 18 C -0.051 4.051 19 H 0.096 0.904 20 N -0.305 5.305 21 C -0.083 4.083 22 C 0.009 3.991 23 N -0.170 5.170 24 C -0.044 4.044 25 N -0.275 5.275 26 C -0.105 4.105 27 N -0.142 5.142 28 C -0.170 4.170 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.160 0.840 38 H 0.108 0.892 39 H 0.055 0.945 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.235 0.765 43 H 0.234 0.766 44 H 0.091 0.909 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.009 -30.333 5.266 32.077 hybrid contribution 1.530 0.886 -0.418 1.817 sum 10.539 -29.447 4.848 31.649 Atomic orbital electron populations 1.70011 1.05953 1.27560 1.46780 1.24988 0.95028 0.99017 0.94517 0.86222 0.79236 0.81233 0.78799 1.19934 1.20802 1.19942 1.22832 0.94887 0.91674 1.59074 0.90963 1.85395 1.04970 0.96324 1.96728 1.23530 1.06554 0.95383 1.04931 1.20317 0.86511 0.86320 0.75125 1.90701 1.15419 1.85649 1.47605 1.45962 1.09978 1.05353 1.77869 1.21064 0.94802 0.80473 1.02222 1.22427 0.98302 0.94637 0.98920 0.89373 1.23154 0.99575 0.97157 0.95987 1.23190 0.97457 0.90541 0.93947 0.90447 1.60556 1.60999 1.05686 1.03274 1.22220 0.96635 0.97703 0.91740 1.21760 0.99736 0.99543 0.78081 1.50527 1.42062 1.12505 1.11923 1.26105 0.92549 0.93334 0.92451 1.70560 1.27269 1.18674 1.10991 1.26078 0.95150 0.89617 0.99648 1.78106 1.24805 1.15564 0.95685 1.23189 1.02370 0.96292 0.95121 0.92131 0.89215 0.89213 0.76752 0.91432 0.91720 0.89009 0.91209 0.84046 0.89187 0.94488 0.88167 0.88220 0.76537 0.76593 0.90940 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.36 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.53 9.92 7.85 -10.99 -0.09 9.83 16 12 O -0.52 -11.89 15.86 5.55 0.09 -11.80 16 13 N -0.74 -9.64 5.56 -60.29 -0.33 -9.97 16 14 C 0.14 1.54 5.35 -4.04 -0.02 1.51 16 15 C -0.12 -0.92 3.93 -89.80 -0.35 -1.27 16 16 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 17 C -0.12 -0.90 7.44 -25.78 -0.19 -1.09 16 18 C 0.06 0.39 3.80 -66.76 -0.25 0.13 16 19 H 0.08 0.62 7.42 -51.93 -0.39 0.24 16 20 N -0.67 -3.48 6.56 -105.71 -0.69 -4.17 16 21 C 0.05 0.27 5.74 -3.82 -0.02 0.25 16 22 C 0.13 0.53 6.81 -4.04 -0.03 0.51 16 23 N -0.38 -2.59 3.69 -62.63 -0.23 -2.82 16 24 C 0.25 1.52 12.63 -90.65 -1.14 0.37 16 25 N -0.55 -4.83 11.19 -15.83 -0.18 -5.01 16 26 C 0.20 1.69 13.03 -91.81 -1.20 0.49 16 27 N -0.31 -3.01 12.57 29.29 0.37 -2.64 16 28 C -0.13 -0.77 7.24 -25.92 -0.19 -0.95 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 32 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.79 7.37 -51.93 -0.38 0.41 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.34 1.11 8.54 -39.29 -0.34 0.78 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.24 8.13 -51.93 -0.42 -0.18 16 40 H 0.10 0.08 8.09 -51.93 -0.42 -0.34 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.22 0.28 8.06 -52.49 -0.42 -0.14 16 43 H 0.22 1.16 8.06 -52.49 -0.42 0.73 16 44 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -37.95 396.67 -11.47 -49.42 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.91 Total: 0.11 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -3.06 Total: -6.13 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.34 Total: -50.15 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.95 -11.47 -49.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688924407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.162 kcal (2) G-P(sol) polarization free energy of solvation -37.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds