Wall clock time and date at job start Sat Apr 11 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86804 * 119.99642 * 2 1 4 4 H 1.48499 * 109.46989 * 239.99921 * 3 2 1 5 5 H 1.48497 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46803 * 120.00164 * 3 2 1 7 7 C 1.38789 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00562 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.81009 * 99.99732 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46682 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00191 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99900 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00191 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47293 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.84791 * 314.66879 * 15 14 13 17 17 C 1.53781 * 113.61570 * 85.86417 * 15 14 13 18 18 C 1.54046 * 86.98297 * 89.16158 * 17 15 14 19 19 H 1.08997 * 113.69386 * 270.87157 * 18 17 15 20 20 N 1.46907 * 113.61617 * 139.97687 * 18 17 15 21 21 C 1.46904 * 110.99645 * 107.50649 * 20 18 17 22 22 C 1.52999 * 109.46802 * 179.97438 * 21 20 18 23 23 N 1.46505 * 109.47108 * 179.97438 * 22 21 20 24 24 C 1.34430 * 126.82029 * 124.70702 * 23 22 21 25 25 N 1.30835 * 108.07755 * 179.89461 * 24 23 22 26 26 C 1.33244 * 109.82365 * 0.38838 * 25 24 23 27 27 N 1.30711 * 108.95097 * 359.75421 * 26 25 24 28 28 C 1.53780 * 113.61448 * 183.47562 * 15 14 13 29 29 H 0.97005 * 119.99998 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47245 * 60.00238 * 10 9 7 31 31 H 1.09000 * 109.47051 * 299.99833 * 10 9 7 32 32 H 0.97002 * 120.00256 * 0.02562 * 13 11 10 33 33 H 1.09004 * 109.47049 * 60.00361 * 14 13 11 34 34 H 1.09000 * 109.47198 * 300.00034 * 14 13 11 35 35 H 1.09001 * 113.61158 * 203.66754 * 17 15 14 36 36 H 1.08998 * 113.61196 * 334.56775 * 17 15 14 37 37 H 1.00899 * 111.00039 * 231.45263 * 20 18 17 38 38 H 1.09000 * 109.47365 * 299.99860 * 21 20 18 39 39 H 1.09001 * 109.47440 * 59.99807 * 21 20 18 40 40 H 1.09001 * 109.47419 * 299.99646 * 22 21 20 41 41 H 1.09001 * 109.47214 * 59.99750 * 22 21 20 42 42 H 1.07995 * 125.96195 * 0.04404 * 24 23 22 43 43 H 1.08001 * 125.52373 * 179.79587 * 26 25 24 44 44 H 1.08998 * 113.61351 * 25.42709 * 28 15 14 45 45 H 1.08994 * 113.61622 * 156.24946 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8442 -6.3430 -0.0018 14 6 2.3305 -7.7150 -0.0019 15 6 3.5026 -8.6985 -0.0020 16 1 4.2807 -8.4295 -0.7164 17 6 4.0399 -9.0167 1.4033 18 6 3.0101 -10.1614 1.4491 19 1 2.0400 -9.8622 1.8460 20 7 3.5243 -11.3913 2.0666 21 6 2.9341 -11.5996 3.3956 22 6 3.4920 -12.8872 4.0051 23 7 2.9039 -13.0947 5.3308 24 6 2.2428 -14.1848 5.7573 25 7 1.8794 -13.9799 6.9973 26 6 2.2814 -12.7725 7.3924 27 7 2.9135 -12.1919 6.4066 28 6 3.0705 -10.1718 -0.0875 29 1 -0.4850 0.8401 0.0004 30 1 3.1245 -3.7313 0.8894 31 1 3.1246 -3.7313 -0.8905 32 1 3.8010 -6.1834 -0.0015 33 1 1.7215 -7.8749 -0.8916 34 1 1.7223 -7.8753 0.8884 35 1 5.0746 -9.3597 1.4078 36 1 3.8512 -8.2282 2.1318 37 1 3.3638 -12.1895 1.4706 38 1 3.1815 -10.7555 4.0394 39 1 1.8511 -11.6811 3.3035 40 1 3.2442 -13.7312 3.3613 41 1 4.5751 -12.8062 4.0971 42 1 2.0480 -15.0753 5.1782 43 1 2.1128 -12.3435 8.3691 44 1 2.0995 -10.3152 -0.5616 45 1 3.8399 -10.8298 -0.4911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688924407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:00 Heat of formation + Delta-G solvation = 47.753006 kcal Electronic energy + Delta-G solvation = -25043.494456 eV Core-core repulsion = 21223.701019 eV Total energy + Delta-G solvation = -3819.793438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.99227 -41.02912 -40.00383 -37.04370 -35.45049 -34.59248 -33.94113 -32.19426 -31.32521 -29.47934 -27.80294 -27.24090 -26.61215 -24.51689 -23.41807 -22.87899 -22.23242 -21.78643 -20.14663 -19.51779 -18.36119 -17.76285 -17.53427 -17.28519 -16.88746 -16.80187 -16.42619 -16.20070 -15.99652 -15.76666 -15.49730 -15.08150 -14.86995 -14.71709 -14.57767 -14.39439 -13.73649 -13.60692 -13.41380 -13.18075 -13.17699 -13.15116 -12.87179 -12.70386 -12.55047 -12.24080 -11.90070 -11.72851 -11.43915 -11.24268 -11.13646 -11.02590 -10.95432 -10.82862 -10.62403 -10.29551 -10.13029 -9.52867 -8.68250 -8.35270 -6.13981 0.68233 1.26023 1.38252 1.43581 1.46231 1.56106 1.58993 1.99457 2.25201 2.28845 2.98765 3.09344 3.30707 3.50413 3.52299 3.56504 3.69408 3.72824 3.80095 3.99313 4.01925 4.07818 4.17907 4.27578 4.30510 4.33057 4.44904 4.49505 4.69505 4.70676 4.76819 4.86157 4.93187 5.00820 5.11868 5.21945 5.25630 5.33541 5.40650 5.44037 5.47519 5.90475 5.95897 6.18764 6.43183 6.49712 7.05743 7.10644 7.22786 8.73720 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.001564 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.280757 B =17898.129555 C =18978.254996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.137 3.863 15 C -0.116 4.116 16 H 0.105 0.895 17 C -0.119 4.119 18 C 0.056 3.944 19 H 0.057 0.943 20 N -0.666 5.666 21 C 0.056 3.944 22 C 0.133 3.867 23 N -0.382 5.382 24 C 0.261 3.739 25 N -0.582 5.582 26 C 0.189 3.811 27 N -0.356 5.356 28 C -0.116 4.116 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.417 0.583 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.357 0.643 38 H 0.056 0.944 39 H 0.027 0.973 40 H 0.143 0.857 41 H 0.099 0.901 42 H 0.264 0.736 43 H 0.234 0.766 44 H 0.073 0.927 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.192 -32.626 3.751 35.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.448 6.448 13 N -0.364 5.364 14 C 0.014 3.986 15 C -0.135 4.135 16 H 0.124 0.876 17 C -0.157 4.157 18 C -0.054 4.054 19 H 0.075 0.925 20 N -0.298 5.298 21 C -0.075 4.075 22 C 0.012 3.988 23 N -0.174 5.174 24 C -0.035 4.035 25 N -0.310 5.310 26 C -0.114 4.114 27 N -0.184 5.184 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.254 0.746 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.177 0.823 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.161 0.839 41 H 0.117 0.883 42 H 0.279 0.721 43 H 0.250 0.750 44 H 0.091 0.909 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.808 -32.104 4.153 34.458 hybrid contribution 0.717 1.272 -0.081 1.463 sum 12.525 -30.832 4.072 33.527 Atomic orbital electron populations 1.70183 1.07997 1.28685 1.47912 1.26139 0.95972 1.03351 0.93674 0.84995 0.77798 0.75626 0.79516 1.18542 1.20376 1.18717 1.23183 0.95381 0.91983 1.59050 0.89844 1.85582 1.10671 0.99315 1.97069 1.23374 1.03523 0.94334 1.06835 1.20093 0.86229 0.86792 0.75124 1.90688 1.17535 1.86180 1.50382 1.45726 1.10317 1.05077 1.75276 1.21198 0.96372 0.79837 1.01220 1.22318 0.97082 0.94745 0.99387 0.87648 1.23146 1.00280 0.96961 0.95355 1.23102 0.96317 0.91078 0.94906 0.92527 1.60486 1.60429 1.05820 1.03099 1.22030 0.96146 0.97606 0.91684 1.21949 0.99444 1.00046 0.77382 1.50665 1.42225 1.12346 1.12119 1.26982 0.90617 0.93958 0.91932 1.70560 1.28688 1.19054 1.12714 1.26500 0.94789 0.89777 1.00294 1.78027 1.26119 1.17376 0.96865 1.23159 1.03121 0.95047 0.94107 0.91985 0.87306 0.87024 0.74608 0.92045 0.93240 0.87971 0.93244 0.82253 0.92508 0.95432 0.83895 0.88261 0.72074 0.75018 0.90856 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 2 C 0.01 0.77 5.49 84.85 0.47 1.23 16 3 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.55 -31.54 9.50 67.95 0.65 -30.89 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 10 C -0.13 -5.16 6.16 71.24 0.44 -4.73 16 11 C 0.53 19.82 7.85 87.66 0.69 20.51 16 12 O -0.57 -26.86 15.86 -3.04 -0.05 -26.91 16 13 N -0.71 -17.70 5.56 -463.05 -2.57 -20.27 16 14 C 0.14 2.94 5.35 86.38 0.46 3.40 16 15 C -0.12 -1.47 3.93 -10.27 -0.04 -1.51 16 16 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 17 C -0.12 -1.60 7.44 31.21 0.23 -1.37 16 18 C 0.06 0.67 3.80 45.53 0.17 0.85 16 19 H 0.06 0.93 7.42 -2.39 -0.02 0.91 16 20 N -0.67 -5.56 6.56 -488.36 -3.20 -8.77 16 21 C 0.06 0.61 5.74 86.30 0.50 1.11 16 22 C 0.13 0.81 6.81 86.38 0.59 1.40 16 23 N -0.38 -4.81 3.69 -352.05 -1.30 -6.11 16 24 C 0.26 2.66 12.63 180.36 2.28 4.94 16 25 N -0.58 -9.94 11.19 -204.00 -2.28 -12.22 16 26 C 0.19 3.30 13.03 180.76 2.36 5.66 16 27 N -0.36 -6.96 12.57 -61.24 -0.77 -7.73 16 28 C -0.12 -1.04 7.24 31.12 0.23 -0.82 16 29 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 30 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 31 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 32 H 0.42 7.46 8.47 -92.71 -0.79 6.68 16 33 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.05 1.24 7.37 -2.39 -0.02 1.22 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 37 H 0.36 1.17 8.54 -89.69 -0.77 0.40 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.03 0.35 8.13 -2.39 -0.02 0.33 16 40 H 0.14 -0.35 8.09 -2.39 -0.02 -0.37 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.26 -0.28 8.06 -2.91 -0.02 -0.30 16 43 H 0.23 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 45 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -87.28 396.67 -0.56 -87.84 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -0.54 Total: 14.53 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 9.01 Total: -0.21 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -9.84 Total: -111.23 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.05 Total: -26.91 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -87.28 -0.56 -87.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688924407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.591 kcal (2) G-P(sol) polarization free energy of solvation -87.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds