Wall clock time and date at job start Sat Apr 11 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86800 * 119.99615 * 2 1 4 4 H 1.48495 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47233 * 299.99539 * 3 2 1 6 6 H 1.48496 * 109.47345 * 59.99751 * 3 2 1 7 7 C 1.38796 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99827 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00015 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47099 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00064 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00060 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00451 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47531 * 173.29287 * 14 13 11 16 16 H 1.09003 * 110.41899 * 54.33745 * 15 14 13 17 17 C 1.54902 * 110.37418 * 176.64992 * 15 14 13 18 18 C 1.55146 * 101.68630 * 155.88303 * 17 15 14 19 19 C 1.54365 * 102.99859 * 324.39304 * 18 17 15 20 20 N 1.47452 * 107.24972 * 22.23230 * 19 18 17 21 21 C 1.46898 * 110.99909 * 123.28599 * 20 19 18 22 22 C 1.53002 * 109.46888 * 74.19975 * 21 20 19 23 23 N 1.46499 * 109.47038 * 180.02562 * 22 21 20 24 24 C 1.34428 * 126.82876 * 124.99402 * 23 22 21 25 25 N 1.30834 * 108.08009 * 179.97438 * 24 23 22 26 26 C 1.33241 * 109.82659 * 0.02562 * 25 24 23 27 27 N 1.30712 * 108.94939 * 359.75003 * 26 25 24 28 28 H 0.96998 * 119.99811 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46892 * 60.00231 * 10 9 7 30 30 H 1.08994 * 109.46985 * 300.00086 * 10 9 7 31 31 H 0.97006 * 119.99924 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.47124 * 53.29219 * 14 13 11 33 33 H 1.08997 * 109.46632 * 293.29461 * 14 13 11 34 34 H 1.08994 * 110.99237 * 273.98823 * 17 15 14 35 35 H 1.08997 * 110.98839 * 37.77711 * 17 15 14 36 36 H 1.08998 * 110.70580 * 82.74828 * 18 17 15 37 37 H 1.09005 * 110.70553 * 205.98299 * 18 17 15 38 38 H 1.08998 * 109.85873 * 262.83767 * 19 18 17 39 39 H 1.09004 * 109.90629 * 141.65419 * 19 18 17 40 40 H 1.09000 * 109.46782 * 194.19290 * 21 20 19 41 41 H 1.09001 * 109.47474 * 314.19664 * 21 20 19 42 42 H 1.09000 * 109.46849 * 299.99274 * 22 21 20 43 43 H 1.08988 * 109.47575 * 59.99515 * 22 21 20 44 44 H 1.07998 * 125.95879 * 359.93298 * 24 23 22 45 45 H 1.08007 * 125.52251 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3430 0.0018 14 6 2.3307 -7.7150 0.0019 15 6 3.4936 -8.6950 -0.1658 16 1 4.2546 -8.5157 0.5937 17 6 2.9840 -10.1556 -0.0844 18 6 4.0836 -10.9164 -0.8712 19 6 4.4691 -9.9174 -1.9831 20 7 4.0779 -8.5737 -1.5185 21 6 5.2297 -7.6620 -1.5147 22 6 5.5722 -7.2670 -2.9526 23 7 6.7213 -6.3583 -2.9488 24 6 7.8744 -6.5145 -3.6219 25 7 8.6423 -5.4893 -3.3553 26 6 8.0169 -4.6616 -2.5192 27 7 6.8350 -5.1481 -2.2451 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8906 30 1 3.1246 -3.7313 -0.8894 31 1 3.8012 -6.1834 0.0022 32 1 1.6284 -7.8401 -0.8223 33 1 1.8223 -7.9125 0.9455 34 1 2.9379 -10.4959 0.9500 35 1 2.0140 -10.2583 -0.5709 36 1 4.9393 -11.1283 -0.2303 37 1 3.6846 -11.8358 -1.2998 38 1 3.9358 -10.1619 -2.9017 39 1 5.5448 -9.9513 -2.1559 40 1 4.9837 -6.7683 -0.9412 41 1 6.0863 -8.1606 -1.0609 42 1 5.8183 -8.1607 -3.5261 43 1 4.7158 -6.7685 -3.4063 44 1 8.1237 -7.3422 -4.2692 45 1 8.4194 -3.7362 -2.1341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691064670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:04 Heat of formation + Delta-G solvation = 66.004580 kcal Electronic energy + Delta-G solvation = -26891.799890 eV Core-core repulsion = 23072.797900 eV Total energy + Delta-G solvation = -3819.001990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.26753 -40.10397 -38.70941 -35.34807 -34.41723 -32.37660 -32.32093 -31.41240 -30.77116 -28.74101 -28.32457 -25.55871 -25.14523 -23.79806 -22.28860 -22.00040 -21.12520 -20.69487 -20.08817 -17.83180 -17.69052 -16.91690 -16.49593 -16.05738 -15.79660 -15.39647 -15.21619 -15.08358 -14.75702 -14.69246 -14.28644 -14.15636 -13.91834 -13.64689 -13.16444 -13.07780 -12.81696 -12.59200 -12.55311 -12.25129 -11.89173 -11.72781 -11.63450 -11.52959 -11.33636 -11.07661 -11.03061 -10.96041 -10.70556 -10.24582 -10.03350 -9.94562 -9.75208 -9.32269 -9.02814 -8.88311 -8.78926 -8.17085 -6.43880 -6.16903 -3.86488 1.39862 1.97948 2.76050 3.08554 3.18720 3.25185 3.31676 3.36464 3.38745 3.75001 3.98027 4.06596 4.16662 4.25397 4.28665 4.38458 4.54398 4.65350 4.71642 4.75391 4.82419 4.92396 5.02927 5.13557 5.18324 5.25221 5.29420 5.34652 5.41606 5.42340 5.51772 5.63511 5.70163 5.77558 5.95579 5.97903 5.99779 6.20185 6.23950 6.41797 6.48256 6.56754 6.70768 7.65476 7.75143 7.85039 8.41111 8.69172 9.28794 10.90621 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.003260 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.607300 B = 8588.007451 C =11411.735683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.736 5.736 14 C 0.136 3.864 15 C 0.063 3.937 16 H 0.063 0.937 17 C -0.120 4.120 18 C -0.141 4.141 19 C 0.037 3.963 20 N -0.520 5.520 21 C 0.041 3.959 22 C 0.134 3.866 23 N -0.379 5.379 24 C 0.250 3.750 25 N -0.548 5.548 26 C 0.198 3.802 27 N -0.308 5.308 28 H 0.267 0.733 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.393 0.607 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.216 0.784 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.417 -24.254 -4.678 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.681 4.681 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.012 3.988 15 C -0.045 4.045 16 H 0.081 0.919 17 C -0.159 4.159 18 C -0.179 4.179 19 C -0.090 4.090 20 N -0.245 5.245 21 C -0.089 4.089 22 C 0.012 3.988 23 N -0.170 5.170 24 C -0.047 4.047 25 N -0.275 5.275 26 C -0.105 4.105 27 N -0.136 5.136 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.229 0.771 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.233 0.767 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 12.617 -23.918 -4.675 27.443 hybrid contribution 3.090 0.846 0.349 3.223 sum 15.707 -23.072 -4.326 28.244 Atomic orbital electron populations 1.70036 1.05926 1.27244 1.47198 1.24987 0.95017 0.98991 0.94625 0.86129 0.79667 0.81944 0.77847 1.19579 1.20598 1.20607 1.22917 0.94968 0.91659 1.58517 0.90892 1.85348 1.05057 0.96337 1.96696 1.23513 1.06407 0.95435 1.04876 1.20278 0.86483 0.86274 0.75051 1.90694 1.15336 1.85629 1.47665 1.46134 1.09678 1.05576 1.77878 1.21268 0.95120 0.80191 1.02237 1.22839 0.96502 0.95878 0.89284 0.91942 1.22670 0.99494 0.92539 1.01190 1.22775 0.98797 0.98889 0.97481 1.22969 0.99480 0.87612 0.98967 1.63384 1.27771 1.09154 1.24160 1.22559 0.92407 0.97954 0.95940 1.21743 0.86813 0.91601 0.98652 1.50557 1.14488 1.17058 1.34922 1.26044 0.83097 0.98987 0.96577 1.70547 1.32975 1.04518 1.19510 1.26083 0.88929 1.00314 0.95163 1.78165 1.20730 0.95822 1.18853 0.92314 0.89468 0.89217 0.77144 0.90295 0.91458 0.90204 0.89734 0.91460 0.90298 0.89868 0.92640 0.89261 0.93842 0.88191 0.87957 0.76735 0.76615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.64 13.22 55.49 0.73 -25.90 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.55 9.50 30.94 0.29 -15.26 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.22 6.16 36.00 0.22 -3.00 16 11 C 0.53 10.34 7.85 -10.99 -0.09 10.25 16 12 O -0.52 -12.07 15.84 5.56 0.09 -11.98 16 13 N -0.74 -10.29 5.37 -60.30 -0.32 -10.62 16 14 C 0.14 1.58 5.37 -4.04 -0.02 1.56 16 15 C 0.06 0.51 2.58 -66.19 -0.17 0.34 16 16 H 0.06 0.49 7.81 -51.93 -0.41 0.09 16 17 C -0.12 -0.74 6.49 -24.59 -0.16 -0.89 16 18 C -0.14 -0.68 6.95 -24.88 -0.17 -0.85 16 19 C 0.04 0.20 6.27 -2.81 -0.02 0.18 16 20 N -0.52 -3.92 4.77 -223.34 -1.07 -4.99 16 21 C 0.04 0.32 4.70 -3.82 -0.02 0.30 16 22 C 0.13 0.96 6.64 -4.04 -0.03 0.94 16 23 N -0.38 -3.55 3.69 -62.63 -0.23 -3.78 16 24 C 0.25 2.05 12.63 -90.65 -1.14 0.91 16 25 N -0.55 -6.04 11.19 -15.83 -0.18 -6.22 16 26 C 0.20 2.23 13.03 -91.81 -1.20 1.03 16 27 N -0.31 -3.82 12.57 29.29 0.37 -3.45 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 30 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 31 H 0.39 4.76 5.77 -40.82 -0.24 4.52 16 32 H 0.08 1.05 8.11 -51.93 -0.42 0.62 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.24 7.11 -51.93 -0.37 -0.13 16 40 H 0.09 0.88 5.19 -51.93 -0.27 0.61 16 41 H 0.04 0.32 7.82 -51.93 -0.41 -0.09 16 42 H 0.10 0.40 7.40 -51.93 -0.38 0.01 16 43 H 0.10 0.89 8.14 -51.94 -0.42 0.47 16 44 H 0.22 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.22 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -37.87 386.40 -11.30 -49.16 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.68 Total: 1.47 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.60 Total: -2.48 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.70 Total: -54.96 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.87 -11.30 -49.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691064670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.168 kcal (2) G-P(sol) polarization free energy of solvation -37.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds