Wall clock time and date at job start Sat Apr 11 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86800 * 119.99615 * 2 1 4 4 H 1.48495 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47233 * 299.99539 * 3 2 1 6 6 H 1.48496 * 109.47345 * 59.99751 * 3 2 1 7 7 C 1.38796 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99827 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00015 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47099 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00064 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00060 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00451 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47531 * 173.29287 * 14 13 11 16 16 H 1.09003 * 110.41899 * 54.33745 * 15 14 13 17 17 C 1.54902 * 110.37418 * 176.64992 * 15 14 13 18 18 C 1.55146 * 101.68630 * 155.88303 * 17 15 14 19 19 C 1.54365 * 102.99859 * 324.39304 * 18 17 15 20 20 N 1.47452 * 107.24972 * 22.23230 * 19 18 17 21 21 C 1.46898 * 110.99909 * 123.28599 * 20 19 18 22 22 C 1.53002 * 109.46888 * 74.19975 * 21 20 19 23 23 N 1.46499 * 109.47038 * 180.02562 * 22 21 20 24 24 C 1.34428 * 126.82876 * 124.99402 * 23 22 21 25 25 N 1.30834 * 108.08009 * 179.97438 * 24 23 22 26 26 C 1.33241 * 109.82659 * 0.02562 * 25 24 23 27 27 N 1.30712 * 108.94939 * 359.75003 * 26 25 24 28 28 H 0.96998 * 119.99811 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46892 * 60.00231 * 10 9 7 30 30 H 1.08994 * 109.46985 * 300.00086 * 10 9 7 31 31 H 0.97006 * 119.99924 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.47124 * 53.29219 * 14 13 11 33 33 H 1.08997 * 109.46632 * 293.29461 * 14 13 11 34 34 H 1.08994 * 110.99237 * 273.98823 * 17 15 14 35 35 H 1.08997 * 110.98839 * 37.77711 * 17 15 14 36 36 H 1.08998 * 110.70580 * 82.74828 * 18 17 15 37 37 H 1.09005 * 110.70553 * 205.98299 * 18 17 15 38 38 H 1.08998 * 109.85873 * 262.83767 * 19 18 17 39 39 H 1.09004 * 109.90629 * 141.65419 * 19 18 17 40 40 H 1.09000 * 109.46782 * 194.19290 * 21 20 19 41 41 H 1.09001 * 109.47474 * 314.19664 * 21 20 19 42 42 H 1.09000 * 109.46849 * 299.99274 * 22 21 20 43 43 H 1.08988 * 109.47575 * 59.99515 * 22 21 20 44 44 H 1.07998 * 125.95879 * 359.93298 * 24 23 22 45 45 H 1.08007 * 125.52251 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3430 0.0018 14 6 2.3307 -7.7150 0.0019 15 6 3.4936 -8.6950 -0.1658 16 1 4.2546 -8.5157 0.5937 17 6 2.9840 -10.1556 -0.0844 18 6 4.0836 -10.9164 -0.8712 19 6 4.4691 -9.9174 -1.9831 20 7 4.0779 -8.5737 -1.5185 21 6 5.2297 -7.6620 -1.5147 22 6 5.5722 -7.2670 -2.9526 23 7 6.7213 -6.3583 -2.9488 24 6 7.8744 -6.5145 -3.6219 25 7 8.6423 -5.4893 -3.3553 26 6 8.0169 -4.6616 -2.5192 27 7 6.8350 -5.1481 -2.2451 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8906 30 1 3.1246 -3.7313 -0.8894 31 1 3.8012 -6.1834 0.0022 32 1 1.6284 -7.8401 -0.8223 33 1 1.8223 -7.9125 0.9455 34 1 2.9379 -10.4959 0.9500 35 1 2.0140 -10.2583 -0.5709 36 1 4.9393 -11.1283 -0.2303 37 1 3.6846 -11.8358 -1.2998 38 1 3.9358 -10.1619 -2.9017 39 1 5.5448 -9.9513 -2.1559 40 1 4.9837 -6.7683 -0.9412 41 1 6.0863 -8.1606 -1.0609 42 1 5.8183 -8.1607 -3.5261 43 1 4.7158 -6.7685 -3.4063 44 1 8.1237 -7.3422 -4.2692 45 1 8.4194 -3.7362 -2.1341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691064670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:03 Heat of formation + Delta-G solvation = 39.733452 kcal Electronic energy + Delta-G solvation = -26892.939092 eV Core-core repulsion = 23072.797900 eV Total energy + Delta-G solvation = -3820.141192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.97727 -40.99906 -39.94714 -36.04059 -35.61152 -34.59907 -32.92630 -32.15931 -31.94836 -30.00786 -28.90737 -27.70180 -26.06683 -24.52875 -22.93505 -22.69873 -21.88648 -21.44917 -21.23428 -19.81091 -18.32932 -17.92801 -17.59718 -17.09367 -16.90270 -16.83772 -16.44891 -16.17571 -15.82195 -15.76234 -15.32199 -14.98871 -14.84921 -14.73398 -14.48027 -14.35816 -13.82930 -13.58886 -13.39275 -13.18000 -13.07189 -12.98065 -12.91563 -12.65600 -12.43909 -12.26002 -12.04557 -11.96086 -11.71651 -11.52790 -11.17155 -11.00732 -10.94822 -10.80738 -10.65186 -10.30633 -10.10944 -9.42667 -8.68211 -8.36290 -6.14225 0.71371 1.25201 1.36866 1.39627 1.44760 1.57009 1.59803 2.01672 2.23996 2.28159 2.79481 2.97590 3.29172 3.42509 3.53040 3.63036 3.70675 3.82516 3.92269 4.01998 4.12527 4.15059 4.19607 4.22360 4.25223 4.32182 4.46672 4.57762 4.58407 4.64585 4.78920 4.80497 4.86561 5.02445 5.05337 5.16890 5.28435 5.36555 5.40501 5.43590 5.45691 5.86829 5.91136 6.01972 6.18711 6.41996 7.05015 7.13052 7.20446 8.73277 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.003260 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.607300 B = 8588.007451 C =11411.735683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.079 0.921 9 S -0.144 6.144 10 C -0.127 4.127 11 C 0.534 3.466 12 O -0.563 6.563 13 N -0.710 5.710 14 C 0.135 3.865 15 C 0.070 3.930 16 H 0.069 0.931 17 C -0.119 4.119 18 C -0.134 4.134 19 C 0.036 3.964 20 N -0.533 5.533 21 C 0.048 3.952 22 C 0.135 3.865 23 N -0.381 5.381 24 C 0.261 3.739 25 N -0.579 5.579 26 C 0.189 3.811 27 N -0.352 5.352 28 H 0.272 0.728 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.405 0.595 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.140 0.860 43 H 0.083 0.917 44 H 0.264 0.736 45 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.079 -26.016 -5.296 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.695 4.695 8 H 0.097 0.903 9 S 0.084 5.916 10 C -0.278 4.278 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.365 5.365 14 C 0.011 3.989 15 C -0.038 4.038 16 H 0.087 0.913 17 C -0.157 4.157 18 C -0.172 4.172 19 C -0.090 4.090 20 N -0.258 5.258 21 C -0.082 4.082 22 C 0.014 3.986 23 N -0.172 5.172 24 C -0.034 4.034 25 N -0.307 5.307 26 C -0.114 4.114 27 N -0.180 5.180 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.243 0.757 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.158 0.842 43 H 0.101 0.899 44 H 0.279 0.721 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 15.318 -25.733 -5.295 30.412 hybrid contribution 2.291 1.236 0.504 2.652 sum 17.610 -24.497 -4.792 30.548 Atomic orbital electron populations 1.70186 1.07886 1.28569 1.48013 1.26114 0.95994 1.03227 0.93687 0.84918 0.78537 0.76350 0.78230 1.18264 1.19785 1.19645 1.23214 0.95219 0.92131 1.58885 0.90330 1.85470 1.10185 0.98990 1.97002 1.23328 1.03524 0.94946 1.06039 1.19979 0.86251 0.86573 0.75181 1.90678 1.17158 1.86073 1.50271 1.45945 1.09705 1.05567 1.75310 1.21457 0.96654 0.79223 1.01561 1.22734 0.95229 0.95875 0.90002 0.91281 1.22679 0.99736 0.91187 1.02138 1.22762 0.98400 0.98960 0.97111 1.23047 1.00681 0.86156 0.99161 1.63316 1.28042 1.10677 1.23748 1.22435 0.92682 0.97020 0.96038 1.21877 0.85812 0.92282 0.98661 1.50639 1.15347 1.16488 1.34773 1.26953 0.81915 0.99050 0.95527 1.70555 1.34141 1.05620 1.20334 1.26443 0.88827 1.00932 0.95165 1.78077 1.21589 0.97658 1.20683 0.91928 0.87852 0.88276 0.75671 0.92005 0.91497 0.89217 0.90371 0.90719 0.89098 0.89436 0.90859 0.91834 0.92931 0.84229 0.89909 0.72096 0.75370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.02 13.22 21.65 0.29 -56.74 16 2 C 0.01 0.85 5.49 84.86 0.47 1.32 16 3 Si 1.00 44.98 29.55 68.60 2.03 47.01 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -32.46 9.50 67.95 0.65 -31.81 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.14 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.13 -5.48 6.16 71.24 0.44 -5.04 16 11 C 0.53 21.14 7.85 87.66 0.69 21.83 16 12 O -0.56 -27.18 15.84 -3.03 -0.05 -27.23 16 13 N -0.71 -19.74 5.37 -463.07 -2.49 -22.23 16 14 C 0.13 3.08 5.37 86.38 0.46 3.54 16 15 C 0.07 1.01 2.58 45.38 0.12 1.12 16 16 H 0.07 0.93 7.81 -2.39 -0.02 0.92 16 17 C -0.12 -1.19 6.49 31.98 0.21 -0.99 16 18 C -0.13 -0.85 6.95 31.79 0.22 -0.63 16 19 C 0.04 0.26 6.27 86.66 0.54 0.81 16 20 N -0.53 -6.92 4.77 -860.53 -4.10 -11.02 16 21 C 0.05 0.64 4.70 86.30 0.41 1.05 16 22 C 0.14 1.64 6.64 86.38 0.57 2.22 16 23 N -0.38 -6.48 3.69 -352.07 -1.30 -7.78 16 24 C 0.26 3.62 12.63 180.36 2.28 5.89 16 25 N -0.58 -11.96 11.19 -204.00 -2.28 -14.24 16 26 C 0.19 4.18 13.03 180.77 2.36 6.53 16 27 N -0.35 -8.56 12.57 -61.24 -0.77 -9.33 16 28 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 29 H 0.10 4.10 8.14 -2.39 -0.02 4.08 16 30 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 31 H 0.40 9.56 5.77 -92.70 -0.54 9.03 16 32 H 0.06 1.66 8.11 -2.39 -0.02 1.64 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.90 8.06 -2.39 -0.02 0.88 16 36 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.30 7.11 -2.38 -0.02 0.29 16 40 H 0.06 1.19 5.19 -2.39 -0.01 1.17 16 41 H 0.05 0.62 7.82 -2.39 -0.02 0.61 16 42 H 0.14 0.55 7.40 -2.39 -0.02 0.53 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.26 0.60 8.06 -2.91 -0.02 0.58 16 45 H 0.23 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -85.81 386.40 0.03 -85.78 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.47 Total: 19.39 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 9.40 Total: 5.85 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -10.66 Total: -121.33 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -85.81 0.03 -85.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691064670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.513 kcal (2) G-P(sol) polarization free energy of solvation -85.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds