Wall clock time and date at job start Sat Apr 11 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00154 * 2 1 4 4 H 1.48496 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47251 * 300.00562 * 3 2 1 6 6 H 1.48499 * 109.47275 * 60.00194 * 3 2 1 7 7 C 1.38814 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99807 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99823 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.46992 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47560 * 64.99670 * 11 10 9 13 13 N 1.46501 * 109.47433 * 304.99867 * 11 10 9 14 14 C 1.34773 * 120.00176 * 154.99770 * 13 11 10 15 15 O 1.21713 * 120.00501 * 0.02562 * 14 13 11 16 16 C 1.46564 * 120.00226 * 180.02562 * 14 13 11 17 17 C 1.37929 * 126.23391 * 180.02562 * 16 14 13 18 18 C 1.39746 * 107.11885 * 179.97438 * 17 16 14 19 19 C 1.35656 * 107.89069 * 359.77109 * 18 17 16 20 20 Cl 1.73596 * 125.58022 * 180.22759 * 19 18 17 21 21 N 1.35583 * 108.84704 * 0.37433 * 19 18 17 22 22 H 0.97001 * 125.70043 * 179.89545 * 21 19 18 23 23 C 1.52999 * 109.47220 * 185.00066 * 11 10 9 24 24 C 1.52995 * 109.47211 * 300.00243 * 23 11 10 25 25 C 1.52999 * 109.47211 * 179.97438 * 24 23 11 26 26 C 1.52995 * 109.47542 * 59.99628 * 25 24 23 27 27 C 1.52995 * 109.47170 * 300.00396 * 26 25 24 28 28 C 1.52999 * 109.47327 * 59.99778 * 27 26 25 29 29 H 0.97010 * 119.99860 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99942 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.46797 * 59.99829 * 10 9 7 32 32 H 1.08998 * 109.47217 * 299.99896 * 10 9 7 33 33 H 0.97001 * 119.99944 * 335.00309 * 13 11 10 34 34 H 1.07995 * 126.43806 * 0.02562 * 17 16 14 35 35 H 1.08001 * 126.05436 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.46997 * 60.00134 * 23 11 10 37 37 H 1.09001 * 109.47051 * 299.99858 * 24 23 11 38 38 H 1.09000 * 109.47228 * 59.99601 * 24 23 11 39 39 H 1.09002 * 109.47177 * 299.99127 * 25 24 23 40 40 H 1.09003 * 109.46855 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.47285 * 179.97438 * 26 25 24 42 42 H 1.09007 * 109.47153 * 60.00010 * 26 25 24 43 43 H 1.09001 * 109.47051 * 299.99542 * 27 26 25 44 44 H 1.09000 * 109.47228 * 179.97438 * 27 26 25 45 45 H 1.09003 * 109.46971 * 180.02562 * 28 27 26 46 46 H 1.08995 * 109.47536 * 60.00234 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8196 0.0001 12 1 0.4971 -4.8138 -0.9310 13 7 0.1447 -4.6758 1.1319 14 6 -1.0798 -5.2366 1.0811 15 8 -1.4220 -5.8629 0.0952 16 6 -1.9995 -5.0922 2.2131 17 6 -3.2750 -5.6101 2.2985 18 6 -3.7891 -5.2345 3.5424 19 6 -2.8377 -4.5127 4.1858 20 17 -2.9927 -3.8236 5.7717 21 7 -1.7470 -4.4146 3.3864 22 1 -0.9247 -3.9490 3.6054 23 6 1.8245 -6.1411 0.1258 24 6 2.7844 -6.2914 -1.0560 25 6 3.5456 -7.6126 -0.9300 26 6 2.5519 -8.7758 -0.9289 27 6 1.5920 -8.6255 0.2530 28 6 0.8307 -7.3044 0.1269 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0005 31 1 2.6846 -3.7145 0.8894 32 1 2.6846 -3.7146 -0.8905 33 1 0.4174 -4.1769 1.9177 34 1 -3.7809 -6.1965 1.5458 35 1 -4.7691 -5.4786 3.9253 36 1 2.3911 -6.1470 1.0570 37 1 2.2178 -6.2856 -1.9872 38 1 3.4927 -5.4630 -1.0565 39 1 4.1123 -7.6180 0.0011 40 1 4.2291 -7.7198 -1.7723 41 1 3.0943 -9.7171 -0.8395 42 1 1.9852 -8.7705 -1.8601 43 1 2.1586 -8.6309 1.1841 44 1 0.8837 -9.4540 0.2535 45 1 0.1471 -7.1971 0.9692 46 1 0.2640 -7.2990 -0.8042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698883437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:23 Heat of formation + Delta-G solvation = -28.548673 kcal Electronic energy + Delta-G solvation = -27877.580434 eV Core-core repulsion = 24020.141850 eV Total energy + Delta-G solvation = -3857.438584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.43733 -40.96204 -39.06412 -37.73502 -37.22791 -35.40514 -33.36188 -32.35159 -32.04470 -31.55011 -30.08705 -28.49927 -25.74327 -24.29361 -23.53843 -22.97121 -21.96933 -21.37756 -21.30417 -20.72943 -20.05647 -19.10469 -17.41106 -17.17887 -16.97165 -16.48307 -15.99102 -15.51438 -15.31116 -15.21810 -15.01516 -14.94718 -14.90513 -14.79687 -14.49489 -14.04299 -13.96133 -13.65221 -13.27772 -13.14326 -12.94716 -12.87176 -12.80853 -12.64275 -12.41509 -12.30067 -12.06603 -11.97645 -11.85721 -11.79434 -11.42037 -11.22178 -11.07835 -10.99832 -10.77614 -10.20117 -10.00296 -9.22860 -9.02945 -7.96406 -5.25987 0.26346 0.56212 1.46133 1.47548 1.50790 1.56846 2.05745 2.20637 2.32851 2.53918 3.38371 3.56653 3.72077 3.85411 3.91152 4.07851 4.13756 4.15734 4.24466 4.28108 4.46723 4.50156 4.57618 4.65530 4.69212 4.72683 4.78604 4.79603 4.90346 5.01404 5.05800 5.14564 5.21314 5.27925 5.31235 5.35064 5.38665 5.43942 5.45923 5.50878 5.54965 5.66683 5.69977 6.05923 6.23910 6.48451 7.12120 7.31707 8.04642 8.28329 9.26468 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.005631 B = 0.005219 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4971.356166 B = 5364.131922 C = 9572.992300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.146 3.854 11 C 0.154 3.846 12 H 0.061 0.939 13 N -0.705 5.705 14 C 0.589 3.411 15 O -0.554 6.554 16 C -0.048 4.048 17 C -0.108 4.108 18 C -0.178 4.178 19 C 0.085 3.915 20 Cl -0.004 7.004 21 N -0.525 5.525 22 H 0.427 0.573 23 C -0.081 4.081 24 C -0.114 4.114 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.097 4.097 29 H 0.249 0.751 30 H 0.373 0.627 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.401 0.599 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -17.045 8.384 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.226 1.226 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.385 5.385 10 C 0.020 3.980 11 C 0.049 3.951 12 H 0.079 0.921 13 N -0.355 5.355 14 C 0.377 3.623 15 O -0.433 6.433 16 C -0.162 4.162 17 C -0.135 4.135 18 C -0.203 4.203 19 C -0.058 4.058 20 Cl 0.025 6.975 21 N -0.125 5.125 22 H 0.266 0.734 23 C -0.101 4.101 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.153 4.153 28 C -0.135 4.135 29 H 0.058 0.942 30 H 0.205 0.795 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.236 0.764 34 H 0.179 0.821 35 H 0.196 0.804 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.258 -17.248 7.810 18.936 hybrid contribution 0.237 1.964 0.456 2.030 sum 0.494 -15.284 8.266 17.383 Atomic orbital electron populations 1.69835 1.06628 1.25846 1.59486 1.25509 0.96228 1.00937 1.03712 0.85129 0.78400 0.80084 0.76456 1.18847 1.22561 1.22148 1.19644 0.91559 0.85038 1.41036 0.90278 1.42539 1.05581 1.00943 1.89488 1.21151 0.93453 0.83910 0.99512 1.21182 0.89944 0.95083 0.88844 0.92058 1.45785 1.14570 1.54385 1.20711 1.17053 0.80919 0.78764 0.85520 1.90821 1.76510 1.43082 1.32923 1.20451 0.98953 1.08143 0.88641 1.21484 0.92173 1.01603 0.98198 1.20943 1.00711 1.04000 0.94646 1.21249 0.90519 1.05564 0.88513 1.98407 1.96954 1.83488 1.18699 1.42031 1.15244 1.42127 1.13055 0.73363 1.21438 0.96205 0.92432 1.00009 1.21604 0.97836 0.98693 0.97122 1.21491 0.97530 0.93435 1.02487 1.21532 0.97226 0.98649 0.98053 1.21534 0.98227 0.96531 0.98989 1.21488 0.96637 0.94260 1.01073 0.94194 0.79493 0.94443 0.93979 0.76383 0.82104 0.80427 0.90245 0.92814 0.91345 0.91356 0.91020 0.90765 0.92737 0.91678 0.92127 0.93712 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.19 13.06 21.65 0.28 -57.90 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.24 -12.82 9.99 84.03 0.84 -11.98 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -35.62 5.43 -343.47 -1.87 -37.49 16 10 C 0.15 5.35 5.31 86.38 0.46 5.81 16 11 C 0.15 4.98 2.00 44.99 0.09 5.07 16 12 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 13 N -0.71 -21.91 4.40 -446.61 -1.97 -23.88 16 14 C 0.59 19.43 6.14 86.41 0.53 19.96 16 15 O -0.55 -21.06 14.00 -4.39 -0.06 -21.12 16 16 C -0.05 -1.39 7.06 40.30 0.28 -1.10 16 17 C -0.11 -2.81 10.65 22.56 0.24 -2.57 16 18 C -0.18 -3.91 10.78 22.04 0.24 -3.67 16 19 C 0.08 1.94 7.74 83.52 0.65 2.59 16 20 Cl 0.00 -0.08 29.30 -2.72 -0.08 -0.16 16 21 N -0.52 -12.89 6.00 -174.61 -1.05 -13.94 16 22 H 0.43 9.32 8.19 -92.71 -0.76 8.57 16 23 C -0.08 -2.08 1.96 -10.79 -0.02 -2.10 16 24 C -0.11 -2.68 4.85 30.59 0.15 -2.53 16 25 C -0.11 -2.08 5.92 30.59 0.18 -1.90 16 26 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 27 C -0.12 -2.39 5.92 30.59 0.18 -2.21 16 28 C -0.10 -2.57 3.73 30.60 0.11 -2.45 16 29 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 30 H 0.37 19.66 7.33 -92.71 -0.68 18.98 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.54 6.71 -2.39 -0.02 1.52 16 33 H 0.40 11.62 7.73 -92.71 -0.72 10.90 16 34 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.61 6.54 -2.39 -0.02 1.60 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.04 1.31 5.78 -2.39 -0.01 1.29 16 46 H 0.05 1.48 7.53 -2.39 -0.02 1.46 16 Total: -1.00 -65.14 379.46 0.74 -64.41 By element: Atomic # 1 Polarization: 46.72 SS G_CDS: -1.13 Total: 45.58 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 4.58 Total: -2.59 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -4.60 Total: -133.21 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.12 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.08 Total: -0.16 kcal Total: -65.14 0.74 -64.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698883437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.857 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds