Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35963 * 116.99678 * 2 1 4 4 C 1.37569 * 120.82318 * 180.02562 * 3 2 1 5 5 C 1.38036 * 114.24741 * 179.97438 * 4 3 2 6 6 C 1.47116 * 127.76018 * 179.97438 * 5 4 3 7 7 O 1.21637 * 119.99909 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00197 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47131 * 35.00870 * 9 8 6 11 11 C 1.53007 * 109.46782 * 155.00310 * 9 8 6 12 12 C 1.52996 * 109.46815 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47048 * 299.99875 * 12 11 9 14 14 H 1.09007 * 109.47327 * 300.00144 * 13 12 11 15 15 C 1.53006 * 109.47389 * 180.02562 * 13 12 11 16 16 N 1.46496 * 109.47236 * 175.00259 * 15 13 12 17 17 C 1.36944 * 119.99684 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99831 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99778 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99921 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99841 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47052 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46830 * 119.99865 * 21 19 17 24 24 H 1.48494 * 109.47220 * 239.99857 * 21 19 17 25 25 C 1.52998 * 109.47292 * 60.00174 * 13 12 11 26 26 C 1.52996 * 109.47270 * 300.00068 * 25 13 12 27 27 S 1.77234 * 104.48339 * 0.23927 * 5 4 3 28 28 N 1.30363 * 120.82589 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.46876 * 60.00234 * 1 2 3 30 30 H 1.09001 * 109.46592 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46863 * 299.99745 * 1 2 3 32 32 H 1.07997 * 122.87581 * 0.02562 * 4 3 2 33 33 H 0.96995 * 120.00018 * 0.27737 * 8 6 5 34 34 H 1.08997 * 109.47081 * 300.00199 * 11 9 8 35 35 H 1.08994 * 109.47155 * 60.00052 * 11 9 8 36 36 H 1.08994 * 109.47414 * 59.99968 * 12 11 9 37 37 H 1.09001 * 109.46909 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.46573 * 295.00108 * 15 13 12 39 39 H 1.08999 * 109.46758 * 54.99399 * 15 13 12 40 40 H 0.96993 * 120.00071 * 359.97438 * 16 15 13 41 41 H 0.97005 * 119.99843 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.47283 * 60.00068 * 25 13 12 43 43 H 1.09007 * 109.47213 * 179.97438 * 25 13 12 44 44 H 1.09002 * 109.46968 * 300.00193 * 26 25 13 45 45 H 1.09001 * 109.47247 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9005 2.5969 -0.0010 6 6 5.3048 3.0353 -0.0011 7 8 6.1993 2.2110 -0.0012 8 7 5.6003 4.3503 -0.0022 9 6 6.9988 4.7869 -0.0017 10 1 7.5968 4.0911 -0.5902 11 6 7.0963 6.1863 -0.6125 12 6 8.5569 6.6420 -0.6126 13 6 9.0809 6.6751 0.8244 14 1 8.4832 7.3710 1.4132 15 6 10.5413 7.1313 0.8245 16 7 11.0071 7.2779 2.2057 17 6 12.2920 7.6800 2.4558 18 1 12.9620 7.8888 1.6349 19 6 12.7333 7.8194 3.7646 20 7 11.9165 7.5655 4.7650 21 14 14.4862 8.3673 4.1058 22 1 15.1951 8.5878 2.8198 23 1 14.4668 9.6324 4.8831 24 1 15.1898 7.3178 4.8859 25 6 8.9833 5.2757 1.4353 26 6 7.5228 4.8200 1.4354 27 16 2.4470 3.6110 0.0064 28 7 1.3520 2.3149 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0643 0.4374 -0.0014 33 1 4.8870 5.0076 0.0012 34 1 6.7234 6.1626 -1.6364 35 1 6.4983 6.8821 -0.0241 36 1 9.1545 5.9461 -1.2013 37 1 8.6263 7.6391 -1.0474 38 1 11.1535 6.3898 0.3113 39 1 10.6228 8.0887 0.3099 40 1 10.4052 7.0907 2.9429 41 1 12.2248 7.6632 5.6795 42 1 9.5810 4.5798 0.8466 43 1 9.3570 5.2992 2.4590 44 1 6.9250 5.5159 2.0241 45 1 7.4533 3.8228 1.8701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700097802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -31.117481 kcal Electronic energy + Delta-G solvation = -26136.211477 eV Core-core repulsion = 22280.705207 eV Total energy + Delta-G solvation = -3855.506270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.74352 -40.18561 -38.41113 -36.88170 -35.31752 -33.76537 -32.00600 -31.21058 -30.66560 -29.22100 -28.41547 -25.84582 -24.58854 -22.98080 -22.62655 -21.79913 -20.77992 -20.36180 -19.64987 -18.97736 -18.17253 -17.11769 -16.78402 -16.72576 -16.36050 -15.42729 -15.24150 -14.88058 -14.69613 -14.32613 -14.15460 -13.89813 -13.84545 -13.72185 -13.25078 -13.11821 -12.55724 -12.40684 -12.24041 -12.08290 -11.92211 -11.84331 -11.60938 -11.36113 -11.04883 -11.02463 -10.93103 -10.77876 -10.55694 -10.27745 -10.21464 -10.17803 -10.03748 -9.80962 -9.61304 -9.25615 -8.88798 -8.83621 -6.86927 -5.73440 -3.01195 -0.34342 0.66293 1.03340 1.74880 2.36597 2.67483 2.90019 3.45426 3.51048 3.53293 4.08346 4.43312 4.61264 4.65053 4.65704 4.75478 4.75852 4.78846 5.02102 5.06105 5.22051 5.27323 5.30751 5.47461 5.52932 5.58854 5.60798 5.62417 5.67161 5.89004 5.97656 6.06618 6.20719 6.25541 6.26732 6.32975 6.44538 6.50777 6.57638 6.75519 6.88367 6.99092 7.04779 7.71409 7.73952 8.46095 9.57167 10.16529 10.50914 11.49674 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.001794 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.050759 B =15607.412071 C =15971.907812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.293 6.293 3 C 0.307 3.693 4 C -0.127 4.127 5 C -0.179 4.179 6 C 0.592 3.408 7 O -0.509 6.509 8 N -0.713 5.713 9 C 0.145 3.855 10 H 0.094 0.906 11 C -0.124 4.124 12 C -0.107 4.107 13 C -0.096 4.096 14 H 0.070 0.930 15 C 0.157 3.843 16 N -0.732 5.732 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.107 4.107 26 C -0.128 4.128 27 S 0.285 5.715 28 N -0.509 5.509 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.180 0.820 33 H 0.398 0.602 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.248 -10.772 -13.215 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.199 6.199 3 C 0.093 3.907 4 C -0.165 4.165 5 C -0.311 4.311 6 C 0.375 3.625 7 O -0.385 6.385 8 N -0.364 5.364 9 C 0.042 3.958 10 H 0.112 0.888 11 C -0.162 4.162 12 C -0.145 4.145 13 C -0.115 4.115 14 H 0.089 0.911 15 C 0.029 3.971 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.145 4.145 26 C -0.167 4.167 27 S 0.434 5.566 28 N -0.350 5.350 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.197 0.803 33 H 0.233 0.767 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.774 -9.983 -13.253 30.653 hybrid contribution 1.028 -0.838 0.594 1.453 sum -24.746 -10.821 -12.659 29.828 Atomic orbital electron populations 1.23020 0.76450 1.03852 1.02659 1.86333 1.23200 1.22336 1.88047 1.19928 0.89817 0.85353 0.95572 1.20807 0.92385 0.98719 1.04584 1.26058 0.99392 0.97775 1.07871 1.16656 0.85212 0.83215 0.77387 1.90889 1.46556 1.52467 1.48542 1.46011 1.09994 1.05906 1.74491 1.21244 0.79831 0.96559 0.98143 0.88843 1.21809 0.98801 0.94883 1.00678 1.21469 0.93921 1.01538 0.97604 1.21368 0.97947 0.97038 0.95107 0.91118 1.20682 0.90981 0.96913 0.88509 1.42388 1.12242 1.81830 1.01166 1.19295 0.88817 1.36945 0.91757 0.91199 1.24729 0.98071 1.02743 0.95602 1.69668 1.34713 1.55837 0.98094 0.86125 0.84561 0.77857 0.77725 1.20591 1.21947 1.21918 1.21492 0.94109 0.96077 1.02788 1.21953 0.97730 1.01876 0.95129 1.84948 0.90008 1.12243 1.69399 1.76472 1.26513 1.01006 1.31045 0.92012 0.87802 0.91980 0.80307 0.76721 0.91512 0.91239 0.91620 0.91310 0.96381 0.96499 0.78253 0.93636 0.91999 0.90296 0.91720 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.43 101.05 1.05 1.25 16 2 O -0.29 -2.52 10.51 -19.62 -0.21 -2.73 16 3 C 0.31 2.88 7.36 -18.42 -0.14 2.74 16 4 C -0.13 -1.18 10.09 -39.90 -0.40 -1.59 16 5 C -0.18 -1.67 6.74 -36.06 -0.24 -1.91 16 6 C 0.59 6.56 7.77 -12.66 -0.10 6.46 16 7 O -0.51 -7.45 16.61 5.24 0.09 -7.37 16 8 N -0.71 -6.57 5.07 -54.97 -0.28 -6.85 16 9 C 0.15 1.56 2.45 -67.92 -0.17 1.39 16 10 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 11 C -0.12 -1.15 5.39 -26.73 -0.14 -1.29 16 12 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 13 C -0.10 -1.46 2.22 -90.62 -0.20 -1.66 16 14 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 15 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 16 N -0.73 -18.45 5.33 -59.91 -0.32 -18.77 16 17 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 21 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 C -0.11 -1.63 5.08 -26.73 -0.14 -1.77 16 26 C -0.13 -1.63 5.50 -26.73 -0.15 -1.78 16 27 S 0.29 2.21 23.27 -107.50 -2.50 -0.29 16 28 N -0.51 -4.82 11.03 29.19 0.32 -4.50 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.09 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 32 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.40 2.65 7.96 -40.82 -0.33 2.33 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 10.11 6.85 -40.82 -0.28 9.83 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.44 7.18 -51.93 -0.37 1.06 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -33.26 384.72 -9.26 -42.52 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.83 Total: 6.12 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.03 Total: -3.84 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.45 Total: -57.78 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.12 Total: -10.09 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.50 Total: -0.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.26 -9.26 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700097802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.405 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds