Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99733 * 2 1 4 4 H 1.48499 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46941 * 299.99693 * 3 2 1 6 6 H 1.48495 * 109.47532 * 59.99868 * 3 2 1 7 7 C 1.38802 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00133 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99739 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47161 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99804 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99925 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.85168 * 336.19440 * 14 13 11 16 16 C 1.53782 * 113.61321 * 107.50124 * 14 13 11 17 17 C 1.53783 * 87.08142 * 89.11781 * 16 14 13 18 18 H 1.08998 * 113.68593 * 270.87005 * 17 16 14 19 19 C 1.53003 * 113.61422 * 139.98199 * 17 16 14 20 20 N 1.46896 * 109.47171 * 87.50376 * 19 17 16 21 21 C 1.46899 * 111.00010 * 179.97438 * 20 19 17 22 22 C 1.53000 * 109.47310 * 180.02562 * 21 20 19 23 23 N 1.46494 * 109.47329 * 179.97438 * 22 21 20 24 24 C 1.34438 * 126.82245 * 124.99870 * 23 22 21 25 25 N 1.30831 * 108.07816 * 180.20890 * 24 23 22 26 26 C 1.33251 * 109.82578 * 359.59820 * 25 24 23 27 27 N 1.30712 * 108.94547 * 0.40841 * 26 25 24 28 28 C 1.53775 * 87.08197 * 25.43150 * 17 16 14 29 29 H 0.96998 * 119.99976 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46851 * 60.00058 * 10 9 7 31 31 H 1.08997 * 109.47225 * 299.99807 * 10 9 7 32 32 H 0.97000 * 119.99996 * 359.97438 * 13 11 10 33 33 H 1.09000 * 113.62004 * 334.56810 * 16 14 13 34 34 H 1.09003 * 113.61820 * 203.66389 * 16 14 13 35 35 H 1.08991 * 109.47221 * 327.49854 * 19 17 16 36 36 H 1.09005 * 109.46701 * 207.49706 * 19 17 16 37 37 H 1.00904 * 111.00042 * 303.94866 * 20 19 17 38 38 H 1.08996 * 109.47289 * 59.99803 * 21 20 19 39 39 H 1.09001 * 109.47098 * 299.99420 * 21 20 19 40 40 H 1.09005 * 109.47410 * 59.99705 * 22 21 20 41 41 H 1.09000 * 109.46984 * 300.00015 * 22 21 20 42 42 H 1.08002 * 125.95849 * 359.93825 * 24 23 22 43 43 H 1.07996 * 125.52171 * 180.12701 * 26 25 24 44 44 H 1.09003 * 113.61395 * 89.11596 * 28 17 16 45 45 H 1.09001 * 113.61552 * 220.02636 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8444 -6.3430 0.0007 14 6 2.3307 -7.7150 0.0008 15 1 1.3215 -7.7891 0.4057 16 6 2.5122 -8.4407 -1.3428 17 6 3.8846 -8.8979 -0.8209 18 1 4.6926 -8.2015 -1.0451 19 6 4.2282 -10.3437 -1.1850 20 7 4.8766 -10.3759 -2.5028 21 6 5.2221 -11.7513 -2.8860 22 6 5.8944 -11.7442 -4.2604 23 7 6.2395 -13.1157 -4.6423 24 6 5.8781 -13.7535 -5.7692 25 7 6.3816 -14.9605 -5.7320 26 6 7.0748 -15.1264 -4.6061 27 7 7.0144 -14.0253 -3.9044 28 6 3.3105 -8.7396 0.5969 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7312 0.8895 31 1 3.1246 -3.7313 -0.8905 32 1 3.8012 -6.1834 0.0004 33 1 2.5725 -7.7677 -2.1981 34 1 1.8085 -9.2590 -1.4957 35 1 3.3149 -10.9378 -1.2148 36 1 4.9055 -10.7557 -0.4368 37 1 4.2947 -9.9406 -3.2028 38 1 4.3159 -12.3555 -2.9275 39 1 5.9064 -12.1726 -2.1496 40 1 6.8007 -11.1401 -4.2185 41 1 5.2105 -11.3227 -4.9971 42 1 5.2735 -13.3428 -6.5644 43 1 7.5976 -16.0264 -4.3180 44 1 2.8249 -9.6395 0.9744 45 1 4.0150 -8.3076 1.3076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700626296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = 74.873937 kcal Electronic energy + Delta-G solvation = -24910.077610 eV Core-core repulsion = 21091.460224 eV Total energy + Delta-G solvation = -3818.617386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.52343 -40.25464 -38.37577 -36.96037 -34.41094 -32.98532 -32.44490 -31.69163 -30.07097 -28.94282 -26.57331 -25.93947 -25.49227 -23.70176 -22.60557 -22.32172 -21.74209 -20.82930 -19.28519 -17.94001 -17.81806 -17.09250 -16.44299 -16.12032 -15.86257 -15.64935 -15.31931 -14.95199 -14.85888 -14.81967 -14.49000 -14.38468 -14.07970 -13.63709 -13.43052 -13.13923 -12.98302 -12.75203 -12.69741 -12.53349 -12.21155 -11.79981 -11.71284 -11.22042 -11.08598 -11.03806 -10.77608 -10.71024 -10.51460 -10.38386 -10.29185 -10.17619 -9.81848 -9.44047 -9.09510 -9.07567 -8.90375 -8.25430 -6.52078 -6.23659 -3.94242 1.12898 1.73869 2.49188 2.99079 3.03317 3.20215 3.26761 3.31204 3.49190 3.67395 3.82866 3.90164 4.18552 4.22416 4.28181 4.34750 4.42723 4.52696 4.63616 4.67884 4.70089 4.98616 5.05286 5.11025 5.11823 5.22109 5.25431 5.32757 5.43619 5.49604 5.55787 5.71352 5.79702 5.80406 5.83946 5.87673 5.93026 6.05440 6.11911 6.25803 6.37132 6.67750 6.76427 7.58199 7.58260 7.68465 8.33661 8.58351 9.21961 10.83842 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.001409 C = 0.001366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.352834 B =19870.797301 C =20492.894126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.721 5.721 14 C 0.126 3.874 15 H 0.101 0.899 16 C -0.153 4.153 17 C -0.109 4.109 18 H 0.100 0.900 19 C 0.072 3.928 20 N -0.686 5.686 21 C 0.050 3.950 22 C 0.130 3.870 23 N -0.378 5.378 24 C 0.255 3.745 25 N -0.549 5.549 26 C 0.197 3.803 27 N -0.317 5.317 28 C -0.141 4.141 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.399 0.601 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.344 0.656 38 H 0.035 0.965 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.219 0.781 43 H 0.217 0.783 44 H 0.092 0.908 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.121 -27.261 -7.416 31.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.374 5.374 14 C 0.019 3.981 15 H 0.119 0.881 16 C -0.192 4.192 17 C -0.127 4.127 18 H 0.118 0.882 19 C -0.057 4.057 20 N -0.317 5.317 21 C -0.081 4.081 22 C 0.007 3.993 23 N -0.169 5.169 24 C -0.042 4.042 25 N -0.276 5.276 26 C -0.106 4.106 27 N -0.145 5.145 28 C -0.179 4.179 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.233 0.767 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.162 0.838 38 H 0.053 0.947 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.235 0.765 43 H 0.233 0.767 44 H 0.110 0.890 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.851 -27.408 -6.683 30.599 hybrid contribution 1.443 1.137 -0.396 1.879 sum 13.295 -26.271 -7.079 30.283 Atomic orbital electron populations 1.70027 1.05961 1.27362 1.46944 1.24991 0.95017 0.99033 0.94512 0.86118 0.79594 0.81876 0.77914 1.19609 1.20561 1.20555 1.22911 0.94952 0.91633 1.58866 0.90861 1.85402 1.04911 0.96359 1.96718 1.23535 1.06602 0.95315 1.04968 1.20340 0.86543 0.86266 0.74789 1.90700 1.15393 1.85542 1.47393 1.45700 1.09763 1.04612 1.77341 1.21662 0.98958 0.81224 0.96249 0.88057 1.23550 0.96509 1.00406 0.98685 1.22646 0.97454 0.96161 0.96475 0.88162 1.21962 0.96927 0.96435 0.90339 1.60371 1.49714 1.16512 1.05102 1.22129 0.99502 0.90479 0.95955 1.21780 1.02287 0.77292 0.97900 1.50526 1.38178 1.13000 1.15197 1.26138 0.97895 0.88931 0.91277 1.70565 1.16735 1.17032 1.23234 1.26058 0.97910 0.97617 0.88997 1.78066 1.15443 1.01127 1.19834 1.23339 0.98849 0.99408 0.96344 0.92225 0.89184 0.89186 0.76734 0.90797 0.89659 0.94754 0.90695 0.83826 0.94678 0.89404 0.88102 0.87987 0.76453 0.76653 0.88983 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.53 9.65 7.85 -10.99 -0.09 9.56 16 12 O -0.52 -11.47 15.46 5.55 0.09 -11.38 16 13 N -0.72 -9.06 5.26 -53.02 -0.28 -9.34 16 14 C 0.13 1.35 4.32 -67.12 -0.29 1.06 16 15 H 0.10 1.32 7.46 -51.93 -0.39 0.93 16 16 C -0.15 -1.30 7.43 -25.92 -0.19 -1.50 16 17 C -0.11 -0.74 3.78 -89.81 -0.34 -1.07 16 18 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 19 C 0.07 0.43 5.52 -3.82 -0.02 0.41 16 20 N -0.69 -3.70 6.50 -113.78 -0.74 -4.44 16 21 C 0.05 0.26 5.90 -3.82 -0.02 0.24 16 22 C 0.13 0.53 6.81 -4.04 -0.03 0.50 16 23 N -0.38 -2.42 3.69 -62.63 -0.23 -2.65 16 24 C 0.25 1.46 12.63 -90.65 -1.14 0.31 16 25 N -0.55 -4.52 11.19 -15.83 -0.18 -4.70 16 26 C 0.20 1.50 13.03 -91.80 -1.20 0.30 16 27 N -0.32 -2.73 12.57 29.29 0.37 -2.37 16 28 C -0.14 -1.05 7.39 -25.92 -0.19 -1.24 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 31 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.40 3.92 8.70 -40.82 -0.36 3.56 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16 35 H 0.03 0.20 7.84 -51.93 -0.41 -0.20 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.34 1.55 8.73 -39.29 -0.34 1.21 16 38 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.14 8.09 -51.93 -0.42 -0.28 16 42 H 0.22 0.29 8.06 -52.49 -0.42 -0.14 16 43 H 0.22 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -37.07 397.48 -11.52 -48.58 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.94 Total: 0.24 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.09 Total: -7.07 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.33 Total: -48.74 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.07 -11.52 -48.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700626296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.459 kcal (2) G-P(sol) polarization free energy of solvation -37.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds