Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99733 * 2 1 4 4 H 1.48499 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46941 * 299.99693 * 3 2 1 6 6 H 1.48495 * 109.47532 * 59.99868 * 3 2 1 7 7 C 1.38802 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00133 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99739 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47161 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99804 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99925 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.85168 * 336.19440 * 14 13 11 16 16 C 1.53782 * 113.61321 * 107.50124 * 14 13 11 17 17 C 1.53783 * 87.08142 * 89.11781 * 16 14 13 18 18 H 1.08998 * 113.68593 * 270.87005 * 17 16 14 19 19 C 1.53003 * 113.61422 * 139.98199 * 17 16 14 20 20 N 1.46896 * 109.47171 * 87.50376 * 19 17 16 21 21 C 1.46899 * 111.00010 * 179.97438 * 20 19 17 22 22 C 1.53000 * 109.47310 * 180.02562 * 21 20 19 23 23 N 1.46494 * 109.47329 * 179.97438 * 22 21 20 24 24 C 1.34438 * 126.82245 * 124.99870 * 23 22 21 25 25 N 1.30831 * 108.07816 * 180.20890 * 24 23 22 26 26 C 1.33251 * 109.82578 * 359.59820 * 25 24 23 27 27 N 1.30712 * 108.94547 * 0.40841 * 26 25 24 28 28 C 1.53775 * 87.08197 * 25.43150 * 17 16 14 29 29 H 0.96998 * 119.99976 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46851 * 60.00058 * 10 9 7 31 31 H 1.08997 * 109.47225 * 299.99807 * 10 9 7 32 32 H 0.97000 * 119.99996 * 359.97438 * 13 11 10 33 33 H 1.09000 * 113.62004 * 334.56810 * 16 14 13 34 34 H 1.09003 * 113.61820 * 203.66389 * 16 14 13 35 35 H 1.08991 * 109.47221 * 327.49854 * 19 17 16 36 36 H 1.09005 * 109.46701 * 207.49706 * 19 17 16 37 37 H 1.00904 * 111.00042 * 303.94866 * 20 19 17 38 38 H 1.08996 * 109.47289 * 59.99803 * 21 20 19 39 39 H 1.09001 * 109.47098 * 299.99420 * 21 20 19 40 40 H 1.09005 * 109.47410 * 59.99705 * 22 21 20 41 41 H 1.09000 * 109.46984 * 300.00015 * 22 21 20 42 42 H 1.08002 * 125.95849 * 359.93825 * 24 23 22 43 43 H 1.07996 * 125.52171 * 180.12701 * 26 25 24 44 44 H 1.09003 * 113.61395 * 89.11596 * 28 17 16 45 45 H 1.09001 * 113.61552 * 220.02636 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8444 -6.3430 0.0007 14 6 2.3307 -7.7150 0.0008 15 1 1.3215 -7.7891 0.4057 16 6 2.5122 -8.4407 -1.3428 17 6 3.8846 -8.8979 -0.8209 18 1 4.6926 -8.2015 -1.0451 19 6 4.2282 -10.3437 -1.1850 20 7 4.8766 -10.3759 -2.5028 21 6 5.2221 -11.7513 -2.8860 22 6 5.8944 -11.7442 -4.2604 23 7 6.2395 -13.1157 -4.6423 24 6 5.8781 -13.7535 -5.7692 25 7 6.3816 -14.9605 -5.7320 26 6 7.0748 -15.1264 -4.6061 27 7 7.0144 -14.0253 -3.9044 28 6 3.3105 -8.7396 0.5969 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7312 0.8895 31 1 3.1246 -3.7313 -0.8905 32 1 3.8012 -6.1834 0.0004 33 1 2.5725 -7.7677 -2.1981 34 1 1.8085 -9.2590 -1.4957 35 1 3.3149 -10.9378 -1.2148 36 1 4.9055 -10.7557 -0.4368 37 1 4.2947 -9.9406 -3.2028 38 1 4.3159 -12.3555 -2.9275 39 1 5.9064 -12.1726 -2.1496 40 1 6.8007 -11.1401 -4.2185 41 1 5.2105 -11.3227 -4.9971 42 1 5.2735 -13.3428 -6.5644 43 1 7.5976 -16.0264 -4.3180 44 1 2.8249 -9.6395 0.9744 45 1 4.0150 -8.3076 1.3076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700626296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = 49.142705 kcal Electronic energy + Delta-G solvation = -24911.193400 eV Core-core repulsion = 21091.460224 eV Total energy + Delta-G solvation = -3819.733176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.98386 -41.23879 -39.50049 -37.49806 -35.03514 -34.58312 -34.03584 -32.18504 -31.02960 -29.97067 -27.70126 -27.13533 -26.60068 -24.21580 -23.18223 -22.83308 -22.24749 -22.04728 -20.13632 -19.82429 -18.30512 -17.92753 -17.45795 -17.09276 -16.87678 -16.51593 -16.42146 -16.11520 -15.94460 -15.78261 -15.34675 -15.01456 -14.87138 -14.66316 -14.52784 -14.29515 -13.92423 -13.71476 -13.35414 -13.32526 -13.17843 -13.15627 -12.91436 -12.61344 -12.57505 -12.18104 -11.84560 -11.69890 -11.43354 -11.15600 -11.09730 -11.00865 -10.93975 -10.81850 -10.63593 -10.26899 -10.02647 -9.50225 -8.66384 -8.34670 -6.12569 0.68494 1.27491 1.37190 1.41716 1.47636 1.58700 1.60319 2.00461 2.25504 2.29690 2.99806 3.05551 3.32404 3.52386 3.53891 3.56390 3.72126 3.88256 3.93690 3.95277 4.00596 4.12800 4.19175 4.31581 4.33584 4.44512 4.51475 4.58822 4.73210 4.77920 4.81270 4.83383 4.89109 4.91982 5.09449 5.18802 5.27037 5.32336 5.42599 5.46105 5.67491 5.87915 5.93883 6.20355 6.39408 6.52719 7.07037 7.11493 7.26580 8.74825 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.001409 C = 0.001366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.352834 B =19870.797301 C =20492.894126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.566 6.566 13 N -0.694 5.694 14 C 0.105 3.895 15 H 0.075 0.925 16 C -0.145 4.145 17 C -0.091 4.091 18 H 0.101 0.899 19 C 0.076 3.924 20 N -0.687 5.687 21 C 0.059 3.941 22 C 0.130 3.870 23 N -0.381 5.381 24 C 0.260 3.740 25 N -0.582 5.582 26 C 0.190 3.810 27 N -0.352 5.352 28 C -0.126 4.126 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.416 0.584 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.351 0.649 38 H 0.031 0.969 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.259 0.741 43 H 0.237 0.763 44 H 0.106 0.894 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.301 -27.575 -8.130 32.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.444 6.444 13 N -0.347 5.347 14 C -0.001 4.001 15 H 0.093 0.907 16 C -0.184 4.184 17 C -0.110 4.110 18 H 0.120 0.880 19 C -0.053 4.053 20 N -0.319 5.319 21 C -0.071 4.071 22 C 0.009 3.991 23 N -0.172 5.172 24 C -0.036 4.036 25 N -0.310 5.310 26 C -0.113 4.113 27 N -0.181 5.181 28 C -0.164 4.164 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.253 0.747 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.170 0.830 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.154 0.846 42 H 0.275 0.725 43 H 0.253 0.747 44 H 0.124 0.876 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.088 -27.754 -7.395 31.991 hybrid contribution 0.783 1.107 -0.182 1.368 sum 14.871 -26.646 -7.577 31.442 Atomic orbital electron populations 1.70188 1.07985 1.28542 1.48104 1.26113 0.95934 1.03280 0.93723 0.84912 0.78641 0.76371 0.78063 1.18002 1.19933 1.19985 1.23244 0.95365 0.92006 1.58755 0.89891 1.85581 1.10593 0.99254 1.97048 1.23376 1.03537 0.94355 1.06823 1.20069 0.86251 0.86667 0.74801 1.90689 1.17486 1.86052 1.50211 1.45419 1.09993 1.04346 1.74981 1.21938 0.98732 0.80639 0.98792 0.90703 1.23511 0.97972 1.00088 0.96794 1.22498 0.96303 0.96736 0.95471 0.88035 1.21885 0.97083 0.95629 0.90698 1.60333 1.49862 1.16581 1.05119 1.21963 0.98842 0.90149 0.96141 1.21929 1.02733 0.76317 0.98146 1.50643 1.37897 1.13418 1.15270 1.26930 0.96955 0.88210 0.91537 1.70572 1.17948 1.18618 1.23899 1.26537 0.97740 0.98156 0.88817 1.77995 1.16873 1.01970 1.21228 1.23300 0.97760 0.98478 0.96908 0.92000 0.87243 0.87139 0.74695 0.91826 0.88622 0.94466 0.90796 0.82993 0.95056 0.91526 0.88474 0.84632 0.72518 0.74723 0.87569 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.69 13.22 21.65 0.29 -55.41 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -30.90 9.50 67.95 0.65 -30.25 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -5.01 6.16 71.24 0.44 -4.58 16 11 C 0.54 19.21 7.85 87.66 0.69 19.90 16 12 O -0.57 -25.86 15.46 -3.05 -0.05 -25.91 16 13 N -0.69 -16.41 5.26 -440.04 -2.32 -18.73 16 14 C 0.10 2.12 4.32 45.52 0.20 2.32 16 15 H 0.07 1.96 7.46 -2.39 -0.02 1.95 16 16 C -0.14 -2.21 7.43 31.12 0.23 -1.98 16 17 C -0.09 -1.00 3.78 -10.27 -0.04 -1.03 16 18 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 19 C 0.08 0.72 5.52 86.30 0.48 1.20 16 20 N -0.69 -5.80 6.50 -513.90 -3.34 -9.14 16 21 C 0.06 0.53 5.90 86.30 0.51 1.03 16 22 C 0.13 0.79 6.81 86.38 0.59 1.37 16 23 N -0.38 -4.33 3.69 -352.06 -1.30 -5.63 16 24 C 0.26 2.48 12.63 180.36 2.28 4.76 16 25 N -0.58 -9.05 11.19 -203.99 -2.28 -11.34 16 26 C 0.19 2.82 13.03 180.76 2.36 5.18 16 27 N -0.35 -5.94 12.57 -61.24 -0.77 -6.70 16 28 C -0.13 -1.57 7.39 31.12 0.23 -1.34 16 29 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 31 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 32 H 0.42 7.05 8.70 -92.71 -0.81 6.25 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.29 7.90 -2.39 -0.02 1.27 16 35 H 0.04 0.35 7.84 -2.39 -0.02 0.33 16 36 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.35 2.18 8.73 -89.69 -0.78 1.40 16 38 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.14 -0.11 8.09 -2.39 -0.02 -0.13 16 42 H 0.26 -0.16 8.06 -2.91 -0.02 -0.18 16 43 H 0.24 1.94 8.06 -2.91 -0.02 1.91 16 44 H 0.11 1.09 8.10 -2.39 -0.02 1.07 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -84.08 397.48 -0.42 -84.50 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.58 Total: 14.82 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 9.06 Total: -2.16 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -9.72 Total: -106.95 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -84.08 -0.42 -84.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700626296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.641 kcal (2) G-P(sol) polarization free energy of solvation -84.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds