Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00148 * 2 1 4 4 C 1.50705 * 109.47397 * 180.02562 * 3 2 1 5 5 N 1.30944 * 122.90144 * 270.19354 * 4 3 2 6 6 C 1.29426 * 117.35858 * 180.34531 * 5 4 3 7 7 S 1.70953 * 110.39417 * 359.70551 * 6 5 4 8 8 C 1.35659 * 122.90300 * 89.99299 * 4 3 2 9 9 C 1.46676 * 126.13436 * 359.97006 * 8 4 3 10 10 O 1.21690 * 120.00240 * 49.23050 * 9 8 4 11 11 N 1.34779 * 120.00065 * 229.23959 * 9 8 4 12 12 C 1.46925 * 120.62843 * 355.64117 * 11 9 8 13 13 C 1.53199 * 108.77206 * 126.41641 * 12 11 9 14 14 C 1.53042 * 109.30742 * 54.63990 * 13 12 11 15 15 C 1.53049 * 109.53716 * 298.62671 * 14 13 12 16 16 H 1.08996 * 109.52595 * 301.40321 * 15 14 13 17 17 C 1.53002 * 109.49464 * 181.31905 * 15 14 13 18 18 N 1.46502 * 109.46610 * 175.16448 * 17 15 14 19 19 C 1.36941 * 119.99811 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99913 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00025 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00144 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99902 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47060 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47152 * 299.99781 * 23 21 19 26 26 H 1.48502 * 109.47152 * 59.99812 * 23 21 19 27 27 C 1.46924 * 120.63097 * 175.67098 * 11 9 8 28 28 H 1.08993 * 109.46944 * 59.99680 * 1 2 3 29 29 H 1.08994 * 109.47483 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46948 * 300.00422 * 1 2 3 31 31 H 1.09003 * 109.47578 * 59.99747 * 3 2 1 32 32 H 1.09007 * 109.47281 * 300.00058 * 3 2 1 33 33 H 1.08004 * 124.80258 * 179.72871 * 6 5 4 34 34 H 1.09002 * 109.58952 * 246.20361 * 12 11 9 35 35 H 1.08997 * 109.58430 * 6.49216 * 12 11 9 36 36 H 1.08998 * 109.49350 * 174.58666 * 13 12 11 37 37 H 1.08994 * 109.50128 * 294.65550 * 13 12 11 38 38 H 1.09008 * 109.45477 * 178.61873 * 14 13 12 39 39 H 1.08993 * 109.46748 * 58.65611 * 14 13 12 40 40 H 1.09000 * 109.47104 * 55.16852 * 17 15 14 41 41 H 1.08999 * 109.47617 * 295.16889 * 17 15 14 42 42 H 0.97000 * 120.00446 * 0.02562 * 18 17 15 43 43 H 0.97001 * 119.99852 * 0.02562 * 22 21 19 44 44 H 1.09002 * 109.58871 * 113.79600 * 27 11 9 45 45 H 1.08997 * 109.70528 * 353.44272 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2219 1.1264 1.0985 6 6 5.5066 1.0321 0.9730 7 16 5.9431 1.0027 -0.6796 8 6 4.2468 1.1283 -1.1399 9 6 3.7231 1.1692 -2.5094 10 8 2.9279 2.0323 -2.8312 11 7 4.1223 0.2507 -3.4113 12 6 5.1521 -0.7388 -3.0663 13 6 4.6084 -2.1401 -3.3625 14 6 4.1384 -2.2032 -4.8177 15 6 3.0109 -1.1916 -5.0357 16 1 2.1868 -1.4127 -4.3576 17 6 2.5195 -1.2785 -6.4821 18 7 1.3654 -0.3938 -6.6597 19 6 0.7519 -0.3054 -7.8808 20 1 1.1187 -0.8882 -8.7128 21 6 -0.3413 0.5332 -8.0492 22 7 -0.7886 1.2430 -7.0351 23 14 -1.1785 0.6532 -9.7148 24 1 -2.3117 1.6093 -9.6314 25 1 -0.2016 1.1297 -10.7267 26 1 -1.6882 -0.6844 -10.1102 27 6 3.5365 0.2203 -4.7584 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 6.2041 0.9790 1.7958 34 1 6.0459 -0.5597 -3.6640 35 1 5.3980 -0.6563 -2.0076 36 1 5.3952 -2.8770 -3.2020 37 1 3.7699 -2.3527 -2.6994 38 1 3.7736 -3.2065 -5.0381 39 1 4.9717 -1.9665 -5.4791 40 1 2.2284 -2.3049 -6.7058 41 1 3.3192 -0.9725 -7.1566 42 1 1.0357 0.1293 -5.9123 43 1 -0.3541 1.1804 -6.1702 44 1 4.2985 0.4777 -5.4941 45 1 2.7152 0.9343 -4.8181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713240987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -15.820482 kcal Electronic energy + Delta-G solvation = -28051.815932 eV Core-core repulsion = 24196.972989 eV Total energy + Delta-G solvation = -3854.842942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78777 -39.70819 -37.69751 -37.57271 -35.17090 -33.17906 -31.89083 -31.58914 -29.69903 -28.43852 -26.46856 -25.41080 -25.20346 -24.76108 -23.16155 -21.83653 -21.36319 -19.88474 -19.02566 -18.62145 -17.26229 -17.06231 -16.58557 -16.46112 -15.70339 -15.47567 -15.22117 -15.03054 -14.68094 -14.50129 -14.34372 -14.25112 -13.76058 -13.48747 -13.26454 -13.14078 -12.94797 -12.56706 -12.52138 -12.38367 -11.81062 -11.74596 -11.46896 -11.18892 -10.88049 -10.70841 -10.67234 -10.52150 -10.31363 -10.25714 -9.99838 -9.92816 -9.74967 -9.59631 -9.27124 -9.11161 -8.85380 -8.65823 -6.95737 -6.04397 -3.04637 0.00477 0.75854 1.18539 2.17233 2.62446 2.97672 3.54497 3.58566 3.61856 3.76217 4.06643 4.33655 4.59491 4.67847 4.71804 4.79028 4.81947 4.91672 5.09495 5.18362 5.22712 5.29802 5.32832 5.39361 5.45318 5.52871 5.66377 5.66734 5.70021 5.72306 5.76462 5.85035 5.96364 6.03163 6.07474 6.30349 6.37901 6.47421 6.68281 6.79110 6.96891 7.21001 7.31580 7.84905 7.99457 8.81377 9.28299 10.14623 10.29328 11.43842 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.003303 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.398841 B = 8474.089123 C = 9482.801215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.125 3.875 4 C 0.128 3.872 5 N -0.457 5.457 6 C 0.019 3.981 7 S 0.181 5.819 8 C -0.257 4.257 9 C 0.593 3.407 10 O -0.512 6.512 11 N -0.598 5.598 12 C 0.097 3.903 13 C -0.131 4.131 14 C -0.112 4.112 15 C -0.109 4.109 16 H 0.074 0.926 17 C 0.167 3.833 18 N -0.744 5.744 19 C -0.334 4.334 20 H 0.064 0.936 21 C -0.045 4.045 22 N -0.941 5.941 23 Si 1.080 2.920 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.296 1.296 27 C 0.123 3.877 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.207 0.793 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.021 0.979 42 H 0.368 0.632 43 H 0.256 0.744 44 H 0.071 0.929 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.706 -4.478 17.356 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.046 3.954 4 C -0.009 4.009 5 N -0.171 5.171 6 C -0.277 4.277 7 S 0.437 5.563 8 C -0.381 4.381 9 C 0.378 3.622 10 O -0.389 6.389 11 N -0.331 5.331 12 C -0.027 4.027 13 C -0.170 4.170 14 C -0.150 4.150 15 C -0.128 4.128 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.390 5.390 19 C -0.465 4.465 20 H 0.082 0.918 21 C -0.242 4.242 22 N -0.587 5.587 23 Si 0.911 3.089 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.223 1.223 27 C 0.002 3.998 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.224 0.776 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.201 0.799 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.010 -3.625 16.179 23.048 hybrid contribution 0.319 -0.450 1.250 1.366 sum 16.328 -4.075 17.429 24.228 Atomic orbital electron populations 1.22793 0.79929 1.03149 1.00543 1.87878 1.20437 1.26408 1.95601 1.21011 0.85287 0.86140 1.02997 1.20100 0.97038 0.98621 0.85180 1.66005 1.04999 1.15072 1.30997 1.28734 0.95216 1.02931 1.00814 1.84031 1.05006 1.64544 1.02768 1.25605 0.97020 1.16088 0.99397 1.16751 0.81305 0.81905 0.82261 1.90891 1.34118 1.35541 1.78311 1.48025 1.40093 1.31138 1.13813 1.22055 0.90620 0.88837 1.01213 1.21888 1.01507 0.95539 0.98041 1.21520 0.98304 0.99683 0.95459 1.21725 0.97791 0.93973 0.99348 0.90731 1.20563 0.90087 0.94240 0.91218 1.42416 1.34056 1.51482 1.11073 1.20004 1.12726 1.24959 0.88843 0.91828 1.25769 0.96619 0.96337 1.05518 1.70863 1.43294 1.42772 1.01740 0.83246 0.76104 0.75756 0.73790 1.21038 1.22299 1.22337 1.21777 0.99231 0.98597 0.80167 0.93191 0.89288 0.93888 0.91097 0.89508 0.77633 0.90701 0.90202 0.90597 0.91243 0.91269 0.91601 0.95888 0.96109 0.79880 0.93294 0.91093 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.72 10.69 -35.23 -0.38 -6.09 16 3 C 0.12 1.77 6.13 36.01 0.22 1.99 16 4 C 0.13 1.77 6.42 -83.89 -0.54 1.23 16 5 N -0.46 -5.58 10.50 -11.53 -0.12 -5.70 16 6 C 0.02 0.16 12.22 51.75 0.63 0.79 16 7 S 0.18 1.57 20.40 -107.50 -2.19 -0.63 16 8 C -0.26 -3.46 5.36 -37.10 -0.20 -3.66 16 9 C 0.59 9.66 7.19 -12.85 -0.09 9.57 16 10 O -0.51 -10.27 15.05 5.20 0.08 -10.19 16 11 N -0.60 -8.72 2.97 -174.31 -0.52 -9.23 16 12 C 0.10 1.03 5.98 -3.71 -0.02 1.01 16 13 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 14 C -0.11 -1.36 5.17 -26.68 -0.14 -1.50 16 15 C -0.11 -1.77 2.38 -90.50 -0.22 -1.99 16 16 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 17 C 0.17 3.38 5.65 -4.04 -0.02 3.36 16 18 N -0.74 -19.21 5.37 -59.91 -0.32 -19.54 16 19 C -0.33 -9.67 9.99 -15.06 -0.15 -9.82 16 20 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.04 -1.33 5.50 -17.43 -0.10 -1.42 16 22 N -0.94 -29.99 13.70 55.49 0.76 -29.23 16 23 Si 1.08 26.49 29.92 -169.99 -5.09 21.40 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.12 2.07 5.50 -3.71 -0.02 2.05 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.36 6.48 -51.93 -0.34 1.02 16 33 H 0.21 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.77 4.23 -35.96 -0.15 0.62 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.37 9.88 5.72 -40.82 -0.23 9.65 16 43 H 0.26 8.13 6.77 -40.82 -0.28 7.85 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.10 2.09 6.23 -51.93 -0.32 1.76 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -36.33 375.67 -8.26 -44.58 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.45 Total: 7.39 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 0.31 Total: 1.57 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.20 Total: -63.70 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.30 Total: -16.29 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -5.09 Total: 21.40 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.19 Total: -0.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.33 -8.26 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713240987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.763 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds