Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00148 * 2 1 4 4 C 1.50705 * 109.47397 * 180.02562 * 3 2 1 5 5 N 1.30944 * 122.90144 * 270.19354 * 4 3 2 6 6 C 1.29426 * 117.35858 * 180.34531 * 5 4 3 7 7 S 1.70953 * 110.39417 * 359.70551 * 6 5 4 8 8 C 1.35659 * 122.90300 * 89.99299 * 4 3 2 9 9 C 1.46676 * 126.13436 * 359.97006 * 8 4 3 10 10 O 1.21690 * 120.00240 * 49.23050 * 9 8 4 11 11 N 1.34779 * 120.00065 * 229.23959 * 9 8 4 12 12 C 1.46925 * 120.62843 * 355.64117 * 11 9 8 13 13 C 1.53199 * 108.77206 * 126.41641 * 12 11 9 14 14 C 1.53042 * 109.30742 * 54.63990 * 13 12 11 15 15 C 1.53049 * 109.53716 * 298.62671 * 14 13 12 16 16 H 1.08996 * 109.52595 * 301.40321 * 15 14 13 17 17 C 1.53002 * 109.49464 * 181.31905 * 15 14 13 18 18 N 1.46502 * 109.46610 * 175.16448 * 17 15 14 19 19 C 1.36941 * 119.99811 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99913 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00025 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00144 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99902 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47060 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47152 * 299.99781 * 23 21 19 26 26 H 1.48502 * 109.47152 * 59.99812 * 23 21 19 27 27 C 1.46924 * 120.63097 * 175.67098 * 11 9 8 28 28 H 1.08993 * 109.46944 * 59.99680 * 1 2 3 29 29 H 1.08994 * 109.47483 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46948 * 300.00422 * 1 2 3 31 31 H 1.09003 * 109.47578 * 59.99747 * 3 2 1 32 32 H 1.09007 * 109.47281 * 300.00058 * 3 2 1 33 33 H 1.08004 * 124.80258 * 179.72871 * 6 5 4 34 34 H 1.09002 * 109.58952 * 246.20361 * 12 11 9 35 35 H 1.08997 * 109.58430 * 6.49216 * 12 11 9 36 36 H 1.08998 * 109.49350 * 174.58666 * 13 12 11 37 37 H 1.08994 * 109.50128 * 294.65550 * 13 12 11 38 38 H 1.09008 * 109.45477 * 178.61873 * 14 13 12 39 39 H 1.08993 * 109.46748 * 58.65611 * 14 13 12 40 40 H 1.09000 * 109.47104 * 55.16852 * 17 15 14 41 41 H 1.08999 * 109.47617 * 295.16889 * 17 15 14 42 42 H 0.97000 * 120.00446 * 0.02562 * 18 17 15 43 43 H 0.97001 * 119.99852 * 0.02562 * 22 21 19 44 44 H 1.09002 * 109.58871 * 113.79600 * 27 11 9 45 45 H 1.08997 * 109.70528 * 353.44272 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2219 1.1264 1.0985 6 6 5.5066 1.0321 0.9730 7 16 5.9431 1.0027 -0.6796 8 6 4.2468 1.1283 -1.1399 9 6 3.7231 1.1692 -2.5094 10 8 2.9279 2.0323 -2.8312 11 7 4.1223 0.2507 -3.4113 12 6 5.1521 -0.7388 -3.0663 13 6 4.6084 -2.1401 -3.3625 14 6 4.1384 -2.2032 -4.8177 15 6 3.0109 -1.1916 -5.0357 16 1 2.1868 -1.4127 -4.3576 17 6 2.5195 -1.2785 -6.4821 18 7 1.3654 -0.3938 -6.6597 19 6 0.7519 -0.3054 -7.8808 20 1 1.1187 -0.8882 -8.7128 21 6 -0.3413 0.5332 -8.0492 22 7 -0.7886 1.2430 -7.0351 23 14 -1.1785 0.6532 -9.7148 24 1 -2.3117 1.6093 -9.6314 25 1 -0.2016 1.1297 -10.7267 26 1 -1.6882 -0.6844 -10.1102 27 6 3.5365 0.2203 -4.7584 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 6.2041 0.9790 1.7958 34 1 6.0459 -0.5597 -3.6640 35 1 5.3980 -0.6563 -2.0076 36 1 5.3952 -2.8770 -3.2020 37 1 3.7699 -2.3527 -2.6994 38 1 3.7736 -3.2065 -5.0381 39 1 4.9717 -1.9665 -5.4791 40 1 2.2284 -2.3049 -6.7058 41 1 3.3192 -0.9725 -7.1566 42 1 1.0357 0.1293 -5.9123 43 1 -0.3541 1.1804 -6.1702 44 1 4.2985 0.4777 -5.4941 45 1 2.7152 0.9343 -4.8181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713240987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -43.059740 kcal Electronic energy + Delta-G solvation = -28052.997114 eV Core-core repulsion = 24196.972989 eV Total energy + Delta-G solvation = -3856.024125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84706 -40.75504 -38.94149 -38.69958 -36.94036 -34.75932 -33.17860 -32.67467 -31.38459 -29.55260 -27.49988 -26.95844 -26.39421 -25.65483 -25.05017 -23.00277 -22.66791 -21.12370 -19.93015 -19.65744 -19.33576 -18.17295 -17.66905 -17.60602 -16.82195 -16.78580 -16.52801 -16.09535 -16.04439 -15.89055 -15.56887 -15.41895 -15.19513 -15.04969 -14.34922 -14.16286 -14.13124 -14.03686 -13.89152 -13.44935 -13.17469 -12.72315 -12.67302 -12.57559 -12.48363 -12.22185 -12.01912 -11.94476 -11.83418 -11.63726 -11.42762 -11.18854 -10.96379 -10.91280 -10.82715 -10.53228 -10.04452 -9.84671 -9.14418 -8.42430 -5.36566 -0.85153 -0.07563 0.41511 1.25447 1.46648 1.55868 1.67240 1.83383 1.84828 2.70230 2.70437 3.14218 3.33275 3.38223 3.56025 3.72041 3.75732 3.77112 3.93587 3.95411 4.02517 4.14812 4.23238 4.27984 4.32534 4.39534 4.43909 4.44748 4.62633 4.65829 4.69853 4.72563 4.78928 4.80118 4.91777 5.00262 5.10804 5.22299 5.30236 5.38968 5.55774 5.90768 6.09713 6.43683 6.45427 6.79963 7.05407 7.95346 8.08446 9.08458 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.003303 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.398841 B = 8474.089123 C = 9482.801215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.123 3.877 4 C 0.119 3.881 5 N -0.488 5.488 6 C 0.037 3.963 7 S 0.263 5.737 8 C -0.300 4.300 9 C 0.587 3.413 10 O -0.570 6.570 11 N -0.596 5.596 12 C 0.089 3.911 13 C -0.125 4.125 14 C -0.105 4.105 15 C -0.095 4.095 16 H 0.047 0.953 17 C 0.165 3.835 18 N -0.760 5.760 19 C -0.336 4.336 20 H 0.071 0.929 21 C -0.108 4.108 22 N -0.974 5.974 23 Si 1.131 2.869 24 H -0.294 1.294 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.131 3.869 28 H 0.031 0.969 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.255 0.745 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.030 0.970 42 H 0.356 0.644 43 H 0.239 0.761 44 H 0.081 0.919 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.373 -6.457 18.093 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C 0.044 3.956 4 C -0.019 4.019 5 N -0.201 5.201 6 C -0.257 4.257 7 S 0.519 5.481 8 C -0.424 4.424 9 C 0.373 3.627 10 O -0.450 6.450 11 N -0.327 5.327 12 C -0.033 4.033 13 C -0.163 4.163 14 C -0.143 4.143 15 C -0.115 4.115 16 H 0.066 0.934 17 C 0.038 3.962 18 N -0.405 5.405 19 C -0.468 4.468 20 H 0.089 0.911 21 C -0.299 4.299 22 N -0.622 5.622 23 Si 0.955 3.045 24 H -0.221 1.221 25 H -0.201 1.201 26 H -0.201 1.201 27 C 0.008 3.992 28 H 0.050 0.950 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.271 0.729 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.188 0.812 43 H 0.049 0.951 44 H 0.099 0.901 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.770 -5.680 16.922 26.636 hybrid contribution -0.687 0.119 1.086 1.291 sum 19.083 -5.562 18.009 26.822 Atomic orbital electron populations 1.22937 0.78889 1.04181 1.00779 1.87836 1.21764 1.26941 1.95643 1.20955 0.86647 0.85811 1.02174 1.20069 0.96810 0.98905 0.86101 1.66045 1.06565 1.17280 1.30253 1.29611 0.94627 0.99103 1.02406 1.83641 0.99964 1.62786 1.01682 1.25405 1.00779 1.18749 0.97503 1.17232 0.80558 0.81302 0.83570 1.90850 1.36636 1.37897 1.79656 1.48099 1.40451 1.31551 1.12591 1.22444 0.90285 0.87854 1.02699 1.21886 1.02143 0.96263 0.95991 1.21514 0.96948 0.98357 0.97437 1.21567 0.98680 0.95201 0.96036 0.93414 1.20766 0.88394 0.92984 0.94012 1.42698 1.35531 1.52289 1.09949 1.20430 1.12385 1.23948 0.89988 0.91069 1.27355 0.97980 0.96314 1.08229 1.70994 1.44395 1.44978 1.01840 0.82608 0.75221 0.76498 0.70171 1.22052 1.20085 1.20050 1.21466 0.98061 0.97612 0.82038 0.94977 0.87867 0.91616 0.89756 0.92392 0.72896 0.87740 0.88852 0.86388 0.93033 0.90343 0.89575 0.95548 0.95251 0.81198 0.95084 0.90061 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -12.68 10.69 -148.98 -1.59 -14.27 16 3 C 0.12 3.75 6.13 71.24 0.44 4.19 16 4 C 0.12 3.35 6.42 42.09 0.27 3.62 16 5 N -0.49 -11.07 10.50 -190.40 -2.00 -13.07 16 6 C 0.04 0.48 12.22 130.60 1.60 2.08 16 7 S 0.26 3.67 20.40 -56.49 -1.15 2.52 16 8 C -0.30 -8.06 5.36 23.88 0.13 -7.93 16 9 C 0.59 20.20 7.19 86.45 0.62 20.82 16 10 O -0.57 -25.32 15.05 -4.32 -0.06 -25.38 16 11 N -0.60 -17.62 2.97 -823.61 -2.45 -20.07 16 12 C 0.09 1.66 5.98 86.37 0.52 2.18 16 13 C -0.12 -2.21 6.08 30.68 0.19 -2.02 16 14 C -0.10 -2.30 5.17 30.62 0.16 -2.14 16 15 C -0.10 -3.17 2.38 -10.71 -0.03 -3.19 16 16 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 17 C 0.17 6.76 5.65 86.38 0.49 7.25 16 18 N -0.76 -40.96 5.37 -343.45 -1.85 -42.81 16 19 C -0.34 -19.84 9.99 84.03 0.84 -19.00 16 20 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 21 C -0.11 -6.59 5.50 84.86 0.47 -6.12 16 22 N -0.97 -64.92 13.70 21.65 0.30 -64.62 16 23 Si 1.13 53.89 29.92 68.60 2.05 55.94 16 24 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 27 C 0.13 4.59 5.50 86.36 0.48 5.07 16 28 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.06 2.07 6.48 -2.38 -0.02 2.06 16 33 H 0.26 0.60 8.06 -2.91 -0.02 0.58 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.50 4.23 -12.55 -0.05 1.44 16 36 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.62 8.14 -2.38 -0.02 1.61 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.36 20.65 5.72 -92.71 -0.53 20.12 16 43 H 0.24 16.26 6.77 -92.71 -0.63 15.63 16 44 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.05 2.33 6.23 -2.39 -0.01 2.31 16 Total: -1.00 -86.29 375.67 1.23 -85.06 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.58 Total: 29.94 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 7.41 Total: 6.76 kcal Atomic # 7 Polarization: -134.57 SS G_CDS: -6.00 Total: -140.57 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.66 Total: -39.65 kcal Atomic # 14 Polarization: 53.89 SS G_CDS: 2.05 Total: 55.94 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.15 Total: 2.52 kcal Total: -86.29 1.23 -85.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713240987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.997 kcal (2) G-P(sol) polarization free energy of solvation -86.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds